Variant CNV_M2_HG19_6_132019328_132035259_7_143953514_143969444

Location: chr6:132019328-132035259 (15Kb), chr7:143953514-143969444 (15Kb), distance: NA
Site classification: Multi-allelic
Variant DCN frequency: 0.720

Genes Overlapped
ARHGEF35 INTRON rho guanine nucleotide exchange factor 35
CTAGE8 GENE NA
CTAGE9 GENE cutaneous T-cell lymphoma-associated antigen 9
ENPP3 INTRON ectonucleotide pyrophosphatase/phosphodiesterase family member 3
OR2A4 GENE olfactory receptor 2A4
OR2A7 GENE olfactory receptor 2A7


1000 Genomes Phase 1


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Diploid copy number distribution
POP	CN0	CN1	CN2	CN3	CN4	CN5	CN6	CN7	CN8	CN9	CN10	CN11	CN12
ASW	0	0	0	0	8	19	11	7	0	0	0	0	0
CEU	0	0	0	0	14	21	11	14	4	2	0	0	0
CHB	0	0	0	0	7	16	14	23	11	4	3	0	0
CHS	0	0	0	1	9	12	27	27	10	3	1	0	1
CLM	0	0	0	5	5	9	16	8	3	2	0	1	0
FIN	0	0	0	0	14	20	16	6	5	0	1	0	0
GBR	0	0	0	0	8	15	12	11	2	3	3	0	0
IBS	0	0	0	0	2	3	0	0	0	1	0	0	0
JPT	0	0	0	0	2	18	21	18	9	1	0	0	0
LWK	0	0	0	3	20	22	10	8	1	3	2	0	0
MXL	0	0	0	2	9	12	15	11	2	3	0	0	0
PUR	0	0	0	3	9	10	13	9	6	1	1	0	0
TSI	0	0	0	0	7	26	24	18	4	4	0	0	0
YRI	0	0	0	1	23	25	13	5	4	0	0	0	0

AFR	0	0	0	4	43	47	23	13	5	3	2	0	0
AFR+	0	0	0	4	51	66	34	20	5	3	2	0	0
AMR	0	0	0	10	23	31	44	28	11	6	1	1	0
ASN	0	0	0	1	18	46	62	68	30	8	4	0	1
EUR	0	0	0	0	45	85	63	49	15	10	4	0	0

ALL	0	0	0	15	137	228	203	165	61	27	11	1	1
    
Diploid copy number distribution (95% confident)
POP	CN0	CN1	CN2	CN3	CN4	CN5	CN6	CN7	CN8	CN9	CN10	CN11	CN12
ASW	0	0	0	0	7	16	5	5	0	0	0	0	0
CEU	0	0	0	0	10	17	9	10	4	2	0	0	0
CHB	0	0	0	0	7	11	12	20	6	1	2	0	0
CHS	0	0	0	1	6	11	14	17	4	0	0	0	1
CLM	0	0	0	5	5	5	8	7	0	0	0	1	0
FIN	0	0	0	0	11	12	10	3	2	0	0	0	0
GBR	0	0	0	0	7	9	10	5	0	2	2	0	0
IBS	0	0	0	0	2	2	0	0	0	1	0	0	0
JPT	0	0	0	0	2	14	17	17	3	1	0	0	0
LWK	0	0	0	2	15	18	6	4	0	1	0	0	0
MXL	0	0	0	2	8	6	12	7	1	2	0	0	0
PUR	0	0	0	3	8	8	10	5	3	1	1	0	0
TSI	0	0	0	0	6	18	21	14	2	2	0	0	0
YRI	0	0	0	1	21	24	10	3	4	0	0	0	0

AFR	0	0	0	3	36	42	16	7	4	1	0	0	0
AFR+	0	0	0	3	43	58	21	12	4	1	0	0	0
AMR	0	0	0	10	21	19	30	19	4	3	1	1	0
ASN	0	0	0	1	15	36	43	54	13	2	2	0	1
EUR	0	0	0	0	36	58	50	32	8	7	2	0	0

ALL	0	0	0	14	115	171	144	117	29	13	5	1	1
    

Imputation spider plots:  ASW  CEU  CHB  CHS  CLM  FIN  GBR  IBS  JPT  LWK  MXL  PUR  TSI  YRI