gsa-engineering/gamgee/fastq__iterator_8h_source.html

 #ifndef __foghorn__fastq_iterator__

 #define __foghorn__fastq_iterator__


 #include "fastq.h"


 namespace gamgee {


 class FastqIterator {

  public:


   FastqIterator();


   FastqIterator(std::istream* in);


   FastqIterator(const FastqIterator&) = delete;


   FastqIterator(FastqIterator&&);


   bool operator!=(const FastqIterator& rhs);


   Fastq& operator*();


   Fastq& operator++();


  private:

   std::istream* m_input_stream;

   Fastq m_element;

   bool m_is_fastq;

   char m_eos_delim;

   char m_bor_delim;


   Fastq fetch_next_element();

   std::string parse_comment();

   std::string parse_seq();

   std::string parse_quals(uint32_t seq_length);

   const std::string parse_multiline();

   void skip_new_lines();

 };


 }  // end namespace gamgee


 #endif

fastq.h

gamgee::FastqIterator::operator!=
bool operator!=(const FastqIterator &rhs)
inequality operator (needed by for-each loop)
Definition: fastq_iterator.cpp:49

gamgee::FastqIterator::FastqIterator
FastqIterator()
creates an empty iterator (used for the end() method)
Definition: fastq_iterator.cpp:11

gamgee::Fastq
Utility class to hold one FastA or FastQ record.
Definition: fastq.h:13

gamgee::FastqIterator
Utility class to enable for-each style iteration in the FastqReader class.
Definition: fastq_iterator.h:12

gamgee::FastqIterator::operator*
Fastq & operator*()
dereference operator (needed by for-each loop)
Definition: fastq_iterator.cpp:40

gamgee::FastqIterator::operator++
Fastq & operator++()
increment operator (needed by for-each loop)
Definition: fastq_iterator.cpp:44