Class List

Here are the classes, structs, unions and interfaces with brief descriptions:

[detail level 123]

▼Ngamgee
▼Nutils	Utility functions for the gamgee library
CHtsFileDeleter	Functor object to delete an htsFile pointer
CSamBodyDeleter	Functor object to delete a bam1_t pointer
CSamHeaderDeleter	Functor object to delete a bam_hdr_t pointer
CVariantBodyDeleter	Functor object to delete a bcf1_t pointer
CVariantHeaderDeleter	Functor object to delete a bcf_hdr_t pointer
CBaseQuals	Utility class to handle the memory management of the sam record object for a read base qualities
CCigar	Utility class to manage the memory of the cigar structure
CFastq	Utility class to hold one FastA or FastQ record
CFastqIterator	Utility class to enable for-each style iteration in the FastqReader class
CFastqReader	Utility class to read many Fastq records from a stream (e.g. Fastq file, stdin, ...) in a for-each loop in a for-each loop
CReadBases	Utility class to handle the memory management of the sam record object for read bases
CSam	Utility class to manipulate a Sam record
CSamHeader	Utility class to hold the header of a sam file
CSamIterator	Utility class to enable for-each style iteration in the SamReader class
CSamPairIterator	Utility class to enable for-each style iteration by pairs in the SamReader class
CSamReader	Utility class to read a SAM/BAM/CRAM file with an appropriate Sam iterator from a stream (e.g. file, stdin, ...) in a for-each loop
CSamWriter	Utility class to write out a SAM/BAM/CRAM file to any stream
CVariant	Utility class to manipulate a Variant record
CVariantHeader	Utility class to hold a variant header
CVariantHeaderBuilder	Utility class to build VariantHeader objects from scratch
CVariantIterator	Utility class to enable for-each style iteration in the VariantReader class
CVariantReader	Utility class to read a VCF/BCF file with an appropriate Variant iterator from a stream (e.g. file, stdin, ...) in a for-each loop
CVariantWriter	Utility class to write out a SAM/BAM/CRAM file to any stream