base_quals.h

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#ifndef __gamgee__base_quals__
#define __gamgee__base_quals__

#include "htslib/sam.h"

#include <memory>

namespace gamgee {

class BaseQuals {
 public:
  explicit BaseQuals(const std::shared_ptr<bam1_t>& sam_record);
  BaseQuals(const BaseQuals& other);
  BaseQuals(BaseQuals&& other) noexcept;
  BaseQuals& operator=(const BaseQuals& other);
  BaseQuals& operator=(BaseQuals&& other) noexcept;
  ~BaseQuals() = default; 

  uint8_t operator[](const uint32_t index) const; 
  uint32_t size() const { return m_num_quals; }   

 private:
  std::shared_ptr<bam1_t> m_sam_record; 
  uint8_t* m_quals;                     
  uint32_t m_num_quals;                 
};

}

#endif /* __gamgee__base_quals__ */