Command line: /home/unix/scalvo/.conda/envs/isoquant/bin/isoquant.py --reference ../AcaNeff2021.mt_and_gdna.fa --bam T1.r1.missed_gene.bam --threads 32 --data_type pacbio_ccs --labels all -o minibam.isoquant
2024-02-08 19:17:50,840 - INFO - Running IsoQuant version 3.3.1
2024-02-08 19:17:50,869 - INFO -  === IsoQuant pipeline started === 
2024-02-08 19:17:50,870 - INFO - Loading reference genome from /broad/moothalab/sandbox/scalvo/paramcarta/acanthamoeba/pacbio/AcaNeff2021.mt_and_gdna.fa
2024-02-08 19:17:50,877 - INFO - Processing 1 sample
2024-02-08 19:17:50,877 - INFO - Processing sample OUT
2024-02-08 19:17:50,877 - INFO - Sample has 1 BAM file: T1.r1.missed_gene.bam
2024-02-08 19:17:50,880 - INFO - Collecting read alignments
2024-02-08 19:17:51,105 - INFO - Processing chromosome JAJGAP010000008
2024-02-08 19:17:51,106 - INFO - Processing chromosome JAJGAP010000006
2024-02-08 19:17:51,107 - INFO - Processing chromosome JAJGAP010000010
2024-02-08 19:17:51,111 - INFO - Processing chromosome JAJGAP010000007
2024-02-08 19:17:51,114 - INFO - Processing chromosome JAJGAP010000005
2024-02-08 19:17:51,117 - INFO - Processing chromosome JAJGAP010000003
2024-02-08 19:17:51,120 - INFO - Processing chromosome JAJGAP010000004
2024-02-08 19:17:51,124 - INFO - Processing chromosome JAJGAP010000009
2024-02-08 19:17:51,127 - INFO - Processing chromosome JAJGAP010000002
2024-02-08 19:17:51,134 - INFO - Processing chromosome JAJGAP010000001
2024-02-08 19:17:51,137 - INFO - Processing chromosome JAJGAP010000011
2024-02-08 19:17:51,142 - INFO - Processing chromosome JAJGAP010000016
2024-02-08 19:17:51,145 - INFO - Processing chromosome JAJGAP010000015
2024-02-08 19:17:51,149 - INFO - Processing chromosome JAJGAP010000021
2024-02-08 19:17:51,153 - INFO - Processing chromosome JAJGAP010000020
2024-02-08 19:17:51,155 - INFO - Processing chromosome JAJGAP010000017
2024-02-08 19:17:51,157 - INFO - Processing chromosome JAJGAP010000019
2024-02-08 19:17:51,159 - INFO - Processing chromosome JAJGAP010000012
2024-02-08 19:17:51,163 - INFO - Processing chromosome JAJGAP010000013
2024-02-08 19:17:51,166 - INFO - Processing chromosome JAJGAP010000018
2024-02-08 19:17:51,168 - INFO - Processing chromosome JAJGAP010000014
2024-02-08 19:17:51,185 - INFO - Processing chromosome JAJGAP010000022
2024-02-08 19:17:51,187 - INFO - Processing chromosome JAJGAP010000027
2024-02-08 19:17:51,200 - INFO - Processing chromosome JAJGAP010000028
2024-02-08 19:17:51,203 - INFO - Processing chromosome JAJGAP010000023
2024-02-08 19:17:51,206 - INFO - Processing chromosome JAJGAP010000024
2024-02-08 19:17:51,209 - INFO - Processing chromosome JAJGAP010000029
2024-02-08 19:17:51,211 - INFO - Processing chromosome JAJGAP010000030
2024-02-08 19:17:51,215 - INFO - Processing chromosome JAJGAP010000026
2024-02-08 19:17:51,217 - INFO - Processing chromosome JAJGAP010000025
2024-02-08 19:17:51,230 - INFO - Finished processing chromosome JAJGAP010000007
2024-02-08 19:17:51,232 - INFO - Processing chromosome JAJGAP010000031
2024-02-08 19:17:51,233 - INFO - Finished processing chromosome JAJGAP010000005
2024-02-08 19:17:51,248 - INFO - Finished processing chromosome JAJGAP010000003
2024-02-08 19:17:51,252 - INFO - Finished processing chromosome JAJGAP010000006
2024-02-08 19:17:51,267 - INFO - Finished processing chromosome JAJGAP010000008
2024-02-08 19:17:51,288 - INFO - Finished processing chromosome JAJGAP010000004
2024-02-08 19:17:51,301 - INFO - Finished processing chromosome JAJGAP010000009
2024-02-08 19:17:51,303 - INFO - Finished processing chromosome JAJGAP010000010
2024-02-08 19:17:51,304 - INFO - Finished processing chromosome JAJGAP010000016
2024-02-08 19:17:51,306 - INFO - Finished processing chromosome JAJGAP010000011
2024-02-08 19:17:51,307 - INFO - Finished processing chromosome JAJGAP010000015
2024-02-08 19:17:51,310 - INFO - Processing chromosome JAJGAP010000032
2024-02-08 19:17:51,311 - INFO - Finished processing chromosome JAJGAP010000021
2024-02-08 19:17:51,313 - INFO - Finished processing chromosome JAJGAP010000019
2024-02-08 19:17:51,315 - INFO - Finished processing chromosome JAJGAP010000017
2024-02-08 19:17:51,317 - INFO - Finished processing chromosome JAJGAP010000012
2024-02-08 19:17:51,318 - INFO - Finished processing chromosome JAJGAP010000020
2024-02-08 19:17:51,320 - INFO - Finished processing chromosome JAJGAP010000013
2024-02-08 19:17:51,321 - INFO - Finished processing chromosome JAJGAP010000018
2024-02-08 19:17:51,323 - INFO - Finished processing chromosome JAJGAP010000014
2024-02-08 19:17:51,324 - INFO - Finished processing chromosome JAJGAP010000022
2024-02-08 19:17:51,326 - INFO - Finished processing chromosome JAJGAP010000027
2024-02-08 19:17:51,327 - INFO - Finished processing chromosome JAJGAP010000028
2024-02-08 19:17:51,329 - INFO - Finished processing chromosome JAJGAP010000023
2024-02-08 19:17:51,330 - INFO - Finished processing chromosome JAJGAP010000024
2024-02-08 19:17:51,332 - INFO - Finished processing chromosome JAJGAP010000029
2024-02-08 19:17:51,333 - INFO - Finished processing chromosome JAJGAP010000030
2024-02-08 19:17:51,335 - INFO - Finished processing chromosome JAJGAP010000026
2024-02-08 19:17:51,336 - INFO - Finished processing chromosome JAJGAP010000025
2024-02-08 19:17:51,344 - INFO - Finished processing chromosome JAJGAP010000031
2024-02-08 19:17:51,347 - INFO - Finished processing chromosome JAJGAP010000001
2024-02-08 19:17:51,360 - INFO - Processing chromosome JAJGAP010000036
2024-02-08 19:17:51,361 - INFO - Finished processing chromosome JAJGAP010000002
2024-02-08 19:17:51,374 - INFO - Finished processing chromosome JAJGAP010000032
2024-02-08 19:17:51,413 - INFO - Processing chromosome JAJGAP010000034
2024-02-08 19:17:51,419 - INFO - Processing chromosome JAJGAP010000033
2024-02-08 19:17:51,420 - INFO - Processing chromosome JAJGAP010000035
2024-02-08 19:17:51,423 - INFO - Processing chromosome JAJGAP010000037
2024-02-08 19:17:51,425 - INFO - Processing chromosome NC_001637.1
2024-02-08 19:17:51,429 - INFO - Finished processing chromosome JAJGAP010000036
2024-02-08 19:17:51,433 - INFO - Processing chromosome JAJGAP010000038
2024-02-08 19:17:51,435 - INFO - Processing chromosome JAJGAP010000039
2024-02-08 19:17:51,437 - INFO - Processing chromosome JAJGAP010000040
2024-02-08 19:17:51,441 - INFO - Processing chromosome JAJGAP010000041
2024-02-08 19:17:51,443 - INFO - Processing chromosome JAJGAP010000042
2024-02-08 19:17:51,444 - INFO - Processing chromosome JAJGAP010000043
2024-02-08 19:17:51,447 - INFO - Processing chromosome JAJGAP010000044
2024-02-08 19:17:51,449 - INFO - Processing chromosome JAJGAP010000045
2024-02-08 19:17:51,450 - INFO - Processing chromosome JAJGAP010000046
2024-02-08 19:17:51,452 - INFO - Processing chromosome JAJGAP010000047
2024-02-08 19:17:51,454 - INFO - Processing chromosome JAJGAP010000049
2024-02-08 19:17:51,456 - INFO - Processing chromosome JAJGAP010000048
2024-02-08 19:17:51,458 - INFO - Processing chromosome JAJGAP010000050
2024-02-08 19:17:51,460 - INFO - Processing chromosome JAJGAP010000051
2024-02-08 19:17:51,462 - INFO - Processing chromosome JAJGAP010000053
2024-02-08 19:17:51,464 - INFO - Processing chromosome JAJGAP010000052
2024-02-08 19:17:51,466 - INFO - Processing chromosome JAJGAP010000054
2024-02-08 19:17:51,468 - INFO - Processing chromosome JAJGAP010000055
2024-02-08 19:17:51,470 - INFO - Processing chromosome JAJGAP010000056
2024-02-08 19:17:51,472 - INFO - Processing chromosome JAJGAP010000057
2024-02-08 19:17:51,473 - INFO - Processing chromosome JAJGAP010000059
2024-02-08 19:17:51,475 - INFO - Processing chromosome JAJGAP010000058
2024-02-08 19:17:51,477 - INFO - Processing chromosome JAJGAP010000060
2024-02-08 19:17:51,478 - INFO - Finished processing chromosome JAJGAP010000034
2024-02-08 19:17:51,481 - INFO - Processing chromosome JAJGAP010000061
2024-02-08 19:17:51,482 - INFO - Finished processing chromosome JAJGAP010000033
2024-02-08 19:17:51,484 - INFO - Finished processing chromosome JAJGAP010000035
2024-02-08 19:17:51,485 - INFO - Finished processing chromosome JAJGAP010000037
2024-02-08 19:17:51,487 - INFO - Finished processing chromosome NC_001637.1
2024-02-08 19:17:51,491 - INFO - Processing chromosome JAJGAP010000062
2024-02-08 19:17:51,491 - INFO - Finished processing chromosome JAJGAP010000038
2024-02-08 19:17:51,493 - INFO - Finished processing chromosome JAJGAP010000039
2024-02-08 19:17:51,495 - INFO - Finished processing chromosome JAJGAP010000040
2024-02-08 19:17:51,497 - INFO - Processing chromosome JAJGAP010000063
2024-02-08 19:17:51,499 - INFO - Finished processing chromosome JAJGAP010000041
2024-02-08 19:17:51,500 - INFO - Finished processing chromosome JAJGAP010000042
2024-02-08 19:17:51,501 - INFO - Finished processing chromosome JAJGAP010000043
2024-02-08 19:17:51,503 - INFO - Finished processing chromosome JAJGAP010000044
2024-02-08 19:17:51,503 - INFO - Finished processing chromosome JAJGAP010000045
2024-02-08 19:17:51,507 - INFO - Finished processing chromosome JAJGAP010000046
2024-02-08 19:17:51,508 - INFO - Finished processing chromosome JAJGAP010000047
2024-02-08 19:17:51,510 - INFO - Finished processing chromosome JAJGAP010000049
2024-02-08 19:17:51,511 - INFO - Finished processing chromosome JAJGAP010000048
2024-02-08 19:17:51,513 - INFO - Finished processing chromosome JAJGAP010000050
2024-02-08 19:17:51,515 - INFO - Finished processing chromosome JAJGAP010000051
2024-02-08 19:17:51,516 - INFO - Finished processing chromosome JAJGAP010000053
2024-02-08 19:17:51,518 - INFO - Finished processing chromosome JAJGAP010000052
2024-02-08 19:17:51,520 - INFO - Finished processing chromosome JAJGAP010000054
2024-02-08 19:17:51,521 - INFO - Finished processing chromosome JAJGAP010000055
2024-02-08 19:17:51,523 - INFO - Finished processing chromosome JAJGAP010000056
2024-02-08 19:17:51,524 - INFO - Finished processing chromosome JAJGAP010000057
2024-02-08 19:17:51,526 - INFO - Finished processing chromosome JAJGAP010000059
2024-02-08 19:17:51,527 - INFO - Finished processing chromosome JAJGAP010000058
2024-02-08 19:17:51,529 - INFO - Finished processing chromosome JAJGAP010000060
2024-02-08 19:17:51,532 - INFO - Finished processing chromosome JAJGAP010000061
2024-02-08 19:17:51,543 - INFO - Processing chromosome JAJGAP010000064
2024-02-08 19:17:51,547 - INFO - Finished processing chromosome JAJGAP010000062
2024-02-08 19:17:51,552 - INFO - Finished processing chromosome JAJGAP010000063
2024-02-08 19:17:51,595 - INFO - Processing chromosome JAJGAP010000065
2024-02-08 19:17:51,598 - INFO - Processing chromosome JAJGAP010000066
2024-02-08 19:17:51,600 - INFO - Processing chromosome JAJGAP010000067
2024-02-08 19:17:51,602 - INFO - Processing chromosome JAJGAP010000068
2024-02-08 19:17:51,604 - INFO - Processing chromosome JAJGAP010000069
2024-02-08 19:17:51,605 - INFO - Finished processing chromosome JAJGAP010000064
2024-02-08 19:17:51,609 - INFO - Processing chromosome JAJGAP010000070
2024-02-08 19:17:51,611 - INFO - Processing chromosome JAJGAP010000072
2024-02-08 19:17:51,613 - INFO - Processing chromosome JAJGAP010000071
2024-02-08 19:17:51,617 - INFO - Processing chromosome JAJGAP010000073
2024-02-08 19:17:51,619 - INFO - Processing chromosome JAJGAP010000074
2024-02-08 19:17:51,621 - INFO - Processing chromosome JAJGAP010000075
2024-02-08 19:17:51,622 - INFO - Processing chromosome JAJGAP010000076
2024-02-08 19:17:51,624 - INFO - Processing chromosome JAJGAP010000077
2024-02-08 19:17:51,626 - INFO - Processing chromosome JAJGAP010000078
2024-02-08 19:17:51,628 - INFO - Processing chromosome JAJGAP010000079
2024-02-08 19:17:51,630 - INFO - Processing chromosome JAJGAP010000080
2024-02-08 19:17:51,632 - INFO - Processing chromosome JAJGAP010000081
2024-02-08 19:17:51,633 - INFO - Processing chromosome JAJGAP010000082
2024-02-08 19:17:51,635 - INFO - Processing chromosome JAJGAP010000083
2024-02-08 19:17:51,637 - INFO - Processing chromosome JAJGAP010000084
2024-02-08 19:17:51,639 - INFO - Processing chromosome JAJGAP010000085
2024-02-08 19:17:51,641 - INFO - Processing chromosome JAJGAP010000086
2024-02-08 19:17:51,643 - INFO - Processing chromosome JAJGAP010000087
2024-02-08 19:17:51,645 - INFO - Processing chromosome JAJGAP010000088
2024-02-08 19:17:51,646 - INFO - Processing chromosome JAJGAP010000089
2024-02-08 19:17:51,649 - INFO - Processing chromosome JAJGAP010000090
2024-02-08 19:17:51,650 - INFO - Processing chromosome JAJGAP010000091
2024-02-08 19:17:51,652 - INFO - Processing chromosome JAJGAP010000092
2024-02-08 19:17:51,654 - INFO - Processing chromosome JAJGAP010000093
2024-02-08 19:17:51,655 - INFO - Finished processing chromosome JAJGAP010000065
2024-02-08 19:17:51,656 - INFO - Finished processing chromosome JAJGAP010000066
2024-02-08 19:17:51,659 - INFO - Finished processing chromosome JAJGAP010000067
2024-02-08 19:17:51,660 - INFO - Finished processing chromosome JAJGAP010000068
2024-02-08 19:17:51,662 - INFO - Finished processing chromosome JAJGAP010000069
2024-02-08 19:17:51,667 - INFO - Processing chromosome JAJGAP010000094
2024-02-08 19:17:51,668 - INFO - Finished processing chromosome JAJGAP010000070
2024-02-08 19:17:51,670 - INFO - Finished processing chromosome JAJGAP010000072
2024-02-08 19:17:51,672 - INFO - Finished processing chromosome JAJGAP010000071
2024-02-08 19:17:51,674 - INFO - Processing chromosome JAJGAP010000095
2024-02-08 19:17:51,675 - INFO - Finished processing chromosome JAJGAP010000073
2024-02-08 19:17:51,676 - INFO - Finished processing chromosome JAJGAP010000074
2024-02-08 19:17:51,678 - INFO - Finished processing chromosome JAJGAP010000075
2024-02-08 19:17:51,679 - INFO - Finished processing chromosome JAJGAP010000076
2024-02-08 19:17:51,681 - INFO - Finished processing chromosome JAJGAP010000077
2024-02-08 19:17:51,683 - INFO - Finished processing chromosome JAJGAP010000078
2024-02-08 19:17:51,684 - INFO - Finished processing chromosome JAJGAP010000079
2024-02-08 19:17:51,685 - INFO - Finished processing chromosome JAJGAP010000080
2024-02-08 19:17:51,687 - INFO - Finished processing chromosome JAJGAP010000081
2024-02-08 19:17:51,688 - INFO - Finished processing chromosome JAJGAP010000082
2024-02-08 19:17:51,690 - INFO - Finished processing chromosome JAJGAP010000083
2024-02-08 19:17:51,692 - INFO - Finished processing chromosome JAJGAP010000084
2024-02-08 19:17:51,693 - INFO - Finished processing chromosome JAJGAP010000085
2024-02-08 19:17:51,695 - INFO - Finished processing chromosome JAJGAP010000086
2024-02-08 19:17:51,697 - INFO - Finished processing chromosome JAJGAP010000087
2024-02-08 19:17:51,698 - INFO - Finished processing chromosome JAJGAP010000088
2024-02-08 19:17:51,700 - INFO - Finished processing chromosome JAJGAP010000089
2024-02-08 19:17:51,702 - INFO - Finished processing chromosome JAJGAP010000090
2024-02-08 19:17:51,703 - INFO - Finished processing chromosome JAJGAP010000091
2024-02-08 19:17:51,705 - INFO - Finished processing chromosome JAJGAP010000092
2024-02-08 19:17:51,707 - INFO - Finished processing chromosome JAJGAP010000093
2024-02-08 19:17:51,719 - INFO - Processing chromosome JAJGAP010000096
2024-02-08 19:17:51,721 - INFO - Processing chromosome JAJGAP010000101
2024-02-08 19:17:51,724 - INFO - Finished processing chromosome JAJGAP010000094
2024-02-08 19:17:51,733 - INFO - Finished processing chromosome JAJGAP010000095
2024-02-08 19:17:51,769 - INFO - Processing chromosome JAJGAP010000098
2024-02-08 19:17:51,771 - INFO - Processing chromosome JAJGAP010000097
2024-02-08 19:17:51,773 - INFO - Processing chromosome JAJGAP010000099
2024-02-08 19:17:51,774 - INFO - Processing chromosome JAJGAP010000100
2024-02-08 19:17:51,776 - INFO - Finished processing chromosome JAJGAP010000096
2024-02-08 19:17:51,777 - INFO - Finished processing chromosome JAJGAP010000101
2024-02-08 19:17:51,781 - INFO - Processing chromosome JAJGAP010000103
2024-02-08 19:17:51,783 - INFO - Processing chromosome JAJGAP010000102
2024-02-08 19:17:51,785 - INFO - Processing chromosome JAJGAP010000104
2024-02-08 19:17:51,789 - INFO - Processing chromosome JAJGAP010000105
2024-02-08 19:17:51,790 - INFO - Processing chromosome JAJGAP010000106
2024-02-08 19:17:51,793 - INFO - Processing chromosome JAJGAP010000107
2024-02-08 19:17:51,795 - INFO - Processing chromosome JAJGAP010000108
2024-02-08 19:17:51,797 - INFO - Processing chromosome JAJGAP010000109
2024-02-08 19:17:51,799 - INFO - Processing chromosome JAJGAP010000110
2024-02-08 19:17:51,801 - INFO - Processing chromosome JAJGAP010000111
2024-02-08 19:17:51,802 - INFO - Finished processing chromosome JAJGAP010000098
2024-02-08 19:17:51,804 - INFO - Finished processing chromosome JAJGAP010000097
2024-02-08 19:17:51,805 - INFO - Finished processing chromosome JAJGAP010000099
2024-02-08 19:17:51,807 - INFO - Finished processing chromosome JAJGAP010000100
2024-02-08 19:17:51,811 - INFO - Finished processing chromosome JAJGAP010000103
2024-02-08 19:17:51,814 - INFO - Finished processing chromosome JAJGAP010000102
2024-02-08 19:17:51,816 - INFO - Finished processing chromosome JAJGAP010000104
2024-02-08 19:17:51,817 - INFO - Finished processing chromosome JAJGAP010000105
2024-02-08 19:17:51,819 - INFO - Finished processing chromosome JAJGAP010000106
2024-02-08 19:17:51,821 - INFO - Finished processing chromosome JAJGAP010000107
2024-02-08 19:17:51,822 - INFO - Finished processing chromosome JAJGAP010000108
2024-02-08 19:17:51,824 - INFO - Finished processing chromosome JAJGAP010000109
2024-02-08 19:17:51,825 - INFO - Finished processing chromosome JAJGAP010000110
2024-02-08 19:17:51,827 - INFO - Finished processing chromosome JAJGAP010000111
2024-02-08 19:17:51,918 - INFO - Resolving multimappers
2024-02-08 19:17:52,231 - INFO - Finishing read assignment, total assignments 448, polyA percentage 99.8
2024-02-08 19:17:52,232 - INFO - Read assignments files saved to minibam.isoquant/OUT/aux/OUT.save*. 
2024-02-08 19:17:52,232 - INFO - To keep these intermediate files for debug purposes use --keep_tmp flag
2024-02-08 19:17:52,233 - INFO - Total alignments processed: 448, polyA tail detected in 447 (99.8%)
2024-02-08 19:17:52,233 - INFO - Processing assigned reads OUT
2024-02-08 19:17:52,371 - INFO - Processing chromosome JAJGAP010000001
2024-02-08 19:17:52,373 - INFO - Processing chromosome JAJGAP010000003
2024-02-08 19:17:52,375 - INFO - Processing chromosome JAJGAP010000004
2024-02-08 19:17:52,376 - INFO - Processing chromosome JAJGAP010000005
2024-02-08 19:17:52,378 - INFO - Processing chromosome JAJGAP010000006
2024-02-08 19:17:52,379 - INFO - Processing chromosome JAJGAP010000007
2024-02-08 19:17:52,380 - INFO - Processing chromosome JAJGAP010000008
2024-02-08 19:17:52,382 - INFO - Processing chromosome JAJGAP010000009
2024-02-08 19:17:52,383 - INFO - Processing chromosome JAJGAP010000010
2024-02-08 19:17:52,384 - INFO - Processing chromosome JAJGAP010000002
2024-02-08 19:17:52,396 - INFO - Processing chromosome JAJGAP010000011
2024-02-08 19:17:52,398 - INFO - Processing chromosome JAJGAP010000013
2024-02-08 19:17:52,400 - INFO - Processing chromosome JAJGAP010000014
2024-02-08 19:17:52,401 - INFO - Processing chromosome JAJGAP010000015
2024-02-08 19:17:52,402 - INFO - Processing chromosome JAJGAP010000016
2024-02-08 19:17:52,404 - INFO - Processing chromosome JAJGAP010000017
2024-02-08 19:17:52,405 - INFO - Processing chromosome JAJGAP010000018
2024-02-08 19:17:52,407 - INFO - Processing chromosome JAJGAP010000019
2024-02-08 19:17:52,408 - INFO - Processing chromosome JAJGAP010000020
2024-02-08 19:17:52,409 - INFO - Processing chromosome JAJGAP010000021
2024-02-08 19:17:52,410 - INFO - Processing chromosome JAJGAP010000012
2024-02-08 19:17:52,426 - INFO - Processing chromosome JAJGAP010000022
2024-02-08 19:17:52,427 - INFO - Processing chromosome JAJGAP010000024
2024-02-08 19:17:52,429 - INFO - Processing chromosome JAJGAP010000025
2024-02-08 19:17:52,430 - INFO - Processing chromosome JAJGAP010000026
2024-02-08 19:17:52,431 - INFO - Processing chromosome JAJGAP010000027
2024-02-08 19:17:52,432 - INFO - Processing chromosome JAJGAP010000023
2024-02-08 19:17:52,437 - INFO - Processing chromosome JAJGAP010000028
2024-02-08 19:17:52,439 - INFO - Processing chromosome JAJGAP010000029
2024-02-08 19:17:52,441 - INFO - Processing chromosome JAJGAP010000030
2024-02-08 19:17:52,442 - INFO - Loading read assignments from minibam.isoquant/OUT/aux/OUT.save_JAJGAP010000007
2024-02-08 19:17:52,443 - INFO - Processing chromosome JAJGAP010000031
2024-02-08 19:17:52,444 - INFO - Processing chromosome JAJGAP010000032
2024-02-08 19:17:52,455 - INFO - Loading read assignments from minibam.isoquant/OUT/aux/OUT.save_JAJGAP010000008
2024-02-08 19:17:52,467 - INFO - Loading read assignments from minibam.isoquant/OUT/aux/OUT.save_JAJGAP010000006
2024-02-08 19:17:52,474 - INFO - Loading read assignments from minibam.isoquant/OUT/aux/OUT.save_JAJGAP010000005
2024-02-08 19:17:52,480 - INFO - Loading read assignments from minibam.isoquant/OUT/aux/OUT.save_JAJGAP010000010
2024-02-08 19:17:52,486 - INFO - Loading read assignments from minibam.isoquant/OUT/aux/OUT.save_JAJGAP010000004
2024-02-08 19:17:52,492 - INFO - Loading read assignments from minibam.isoquant/OUT/aux/OUT.save_JAJGAP010000009
2024-02-08 19:17:52,498 - INFO - Loading read assignments from minibam.isoquant/OUT/aux/OUT.save_JAJGAP010000003
2024-02-08 19:17:52,504 - INFO - Loading read assignments from minibam.isoquant/OUT/aux/OUT.save_JAJGAP010000002
2024-02-08 19:17:52,594 - INFO - Loading read assignments from minibam.isoquant/OUT/aux/OUT.save_JAJGAP010000001
2024-02-08 19:17:52,629 - INFO - Loading read assignments from minibam.isoquant/OUT/aux/OUT.save_JAJGAP010000021
2024-02-08 19:17:52,636 - INFO - Loading read assignments from minibam.isoquant/OUT/aux/OUT.save_JAJGAP010000019
2024-02-08 19:17:52,643 - INFO - Loading read assignments from minibam.isoquant/OUT/aux/OUT.save_JAJGAP010000013
2024-02-08 19:17:52,649 - INFO - Loading read assignments from minibam.isoquant/OUT/aux/OUT.save_JAJGAP010000014
2024-02-08 19:17:52,654 - INFO - Loading read assignments from minibam.isoquant/OUT/aux/OUT.save_JAJGAP010000018
2024-02-08 19:17:52,661 - INFO - Loading read assignments from minibam.isoquant/OUT/aux/OUT.save_JAJGAP010000017
2024-02-08 19:17:52,667 - INFO - Loading read assignments from minibam.isoquant/OUT/aux/OUT.save_JAJGAP010000011
2024-02-08 19:17:52,674 - INFO - Loading read assignments from minibam.isoquant/OUT/aux/OUT.save_JAJGAP010000015
2024-02-08 19:17:52,680 - INFO - Loading read assignments from minibam.isoquant/OUT/aux/OUT.save_JAJGAP010000016
2024-02-08 19:17:52,686 - INFO - Loading read assignments from minibam.isoquant/OUT/aux/OUT.save_JAJGAP010000020
2024-02-08 19:17:52,692 - INFO - Loading read assignments from minibam.isoquant/OUT/aux/OUT.save_JAJGAP010000012
2024-02-08 19:17:52,699 - INFO - Loading read assignments from minibam.isoquant/OUT/aux/OUT.save_JAJGAP010000022
2024-02-08 19:17:52,705 - INFO - Loading read assignments from minibam.isoquant/OUT/aux/OUT.save_JAJGAP010000025
2024-02-08 19:17:52,713 - INFO - Loading read assignments from minibam.isoquant/OUT/aux/OUT.save_JAJGAP010000023
2024-02-08 19:17:52,720 - INFO - Loading read assignments from minibam.isoquant/OUT/aux/OUT.save_JAJGAP010000024
2024-02-08 19:17:52,727 - INFO - Loading read assignments from minibam.isoquant/OUT/aux/OUT.save_JAJGAP010000027
2024-02-08 19:17:52,733 - INFO - Loading read assignments from minibam.isoquant/OUT/aux/OUT.save_JAJGAP010000026
2024-02-08 19:17:52,740 - INFO - Loading read assignments from minibam.isoquant/OUT/aux/OUT.save_JAJGAP010000032
2024-02-08 19:17:52,746 - INFO - Loading read assignments from minibam.isoquant/OUT/aux/OUT.save_JAJGAP010000031
2024-02-08 19:17:52,752 - INFO - Loading read assignments from minibam.isoquant/OUT/aux/OUT.save_JAJGAP010000028
2024-02-08 19:17:52,759 - INFO - Loading read assignments from minibam.isoquant/OUT/aux/OUT.save_JAJGAP010000029
2024-02-08 19:17:52,765 - INFO - Loading read assignments from minibam.isoquant/OUT/aux/OUT.save_JAJGAP010000030
2024-02-08 19:17:52,780 - INFO - Finished processing chromosome JAJGAP010000007
2024-02-08 19:17:52,786 - INFO - Processing chromosome JAJGAP010000033
2024-02-08 19:17:52,788 - INFO - Finished processing chromosome JAJGAP010000008
2024-02-08 19:17:52,791 - INFO - Finished processing chromosome JAJGAP010000006
2024-02-08 19:17:52,793 - INFO - Finished processing chromosome JAJGAP010000005
2024-02-08 19:17:52,795 - INFO - Processing chromosome JAJGAP010000034
2024-02-08 19:17:52,796 - INFO - Processing chromosome JAJGAP010000035
2024-02-08 19:17:52,801 - INFO - Finished processing chromosome JAJGAP010000010
2024-02-08 19:17:52,806 - INFO - Processing chromosome JAJGAP010000036
2024-02-08 19:17:52,807 - INFO - Finished processing chromosome JAJGAP010000004
2024-02-08 19:17:52,807 - INFO - Finished processing chromosome JAJGAP010000009
2024-02-08 19:17:52,810 - INFO - Finished processing chromosome JAJGAP010000003
2024-02-08 19:17:52,813 - INFO - Processing chromosome JAJGAP010000037
2024-02-08 19:17:52,816 - INFO - Finished processing chromosome JAJGAP010000021
2024-02-08 19:17:52,820 - INFO - Finished processing chromosome JAJGAP010000014
2024-02-08 19:17:52,822 - INFO - Finished processing chromosome JAJGAP010000002
2024-02-08 19:17:52,824 - INFO - Processing chromosome NC_001637.1
2024-02-08 19:17:52,827 - INFO - Processing chromosome JAJGAP010000038
2024-02-08 19:17:52,829 - INFO - Processing chromosome JAJGAP010000039
2024-02-08 19:17:52,833 - INFO - Finished processing chromosome JAJGAP010000020
2024-02-08 19:17:52,834 - INFO - Finished processing chromosome JAJGAP010000001
2024-02-08 19:17:52,837 - INFO - Processing chromosome JAJGAP010000040
2024-02-08 19:17:52,840 - INFO - Finished processing chromosome JAJGAP010000015
2024-02-08 19:17:52,842 - INFO - Finished processing chromosome JAJGAP010000012
2024-02-08 19:17:52,845 - INFO - Processing chromosome JAJGAP010000041
2024-02-08 19:17:52,846 - INFO - Processing chromosome JAJGAP010000042
2024-02-08 19:17:52,850 - INFO - Finished processing chromosome JAJGAP010000019
2024-02-08 19:17:52,855 - INFO - Processing chromosome JAJGAP010000043
2024-02-08 19:17:52,855 - INFO - Finished processing chromosome JAJGAP010000013
2024-02-08 19:17:52,858 - INFO - Finished processing chromosome JAJGAP010000026
2024-02-08 19:17:52,858 - INFO - Finished processing chromosome JAJGAP010000017
2024-02-08 19:17:52,864 - INFO - Finished processing chromosome JAJGAP010000027
2024-02-08 19:17:52,865 - INFO - Finished processing chromosome JAJGAP010000018
2024-02-08 19:17:52,869 - INFO - Processing chromosome JAJGAP010000044
2024-02-08 19:17:52,870 - INFO - Finished processing chromosome JAJGAP010000029
2024-02-08 19:17:52,870 - INFO - Finished processing chromosome JAJGAP010000011
2024-02-08 19:17:52,871 - INFO - Loading read assignments from minibam.isoquant/OUT/aux/OUT.save_JAJGAP010000033
2024-02-08 19:17:52,872 - INFO - Finished processing chromosome JAJGAP010000016
2024-02-08 19:17:52,874 - INFO - Processing chromosome JAJGAP010000045
2024-02-08 19:17:52,876 - INFO - Processing chromosome JAJGAP010000046
2024-02-08 19:17:52,882 - INFO - Loading read assignments from minibam.isoquant/OUT/aux/OUT.save_JAJGAP010000035
2024-02-08 19:17:52,886 - INFO - Processing chromosome JAJGAP010000047
2024-02-08 19:17:52,886 - INFO - Finished processing chromosome JAJGAP010000022
2024-02-08 19:17:52,887 - INFO - Finished processing chromosome JAJGAP010000025
2024-02-08 19:17:52,889 - INFO - Finished processing chromosome JAJGAP010000023
2024-02-08 19:17:52,890 - INFO - Processing chromosome JAJGAP010000048
2024-02-08 19:17:52,891 - INFO - Finished processing chromosome JAJGAP010000024
2024-02-08 19:17:52,893 - INFO - Loading read assignments from minibam.isoquant/OUT/aux/OUT.save_JAJGAP010000034
2024-02-08 19:17:52,893 - INFO - Processing chromosome JAJGAP010000049
2024-02-08 19:17:52,894 - INFO - Processing chromosome JAJGAP010000050
2024-02-08 19:17:52,898 - INFO - Finished processing chromosome JAJGAP010000032
2024-02-08 19:17:52,900 - INFO - Processing chromosome JAJGAP010000051
2024-02-08 19:17:52,903 - INFO - Finished processing chromosome JAJGAP010000028
2024-02-08 19:17:52,904 - INFO - Processing chromosome JAJGAP010000052
2024-02-08 19:17:52,904 - INFO - Loading read assignments from minibam.isoquant/OUT/aux/OUT.save_JAJGAP010000036
2024-02-08 19:17:52,906 - INFO - Processing chromosome JAJGAP010000053
2024-02-08 19:17:52,910 - INFO - Processing chromosome JAJGAP010000054
2024-02-08 19:17:52,910 - INFO - Finished processing chromosome JAJGAP010000030
2024-02-08 19:17:52,911 - INFO - Finished processing chromosome JAJGAP010000031
2024-02-08 19:17:52,915 - INFO - Processing chromosome JAJGAP010000055
2024-02-08 19:17:52,915 - INFO - Loading read assignments from minibam.isoquant/OUT/aux/OUT.save_JAJGAP010000037
2024-02-08 19:17:52,916 - INFO - Processing chromosome JAJGAP010000056
2024-02-08 19:17:52,917 - INFO - Processing chromosome JAJGAP010000057
2024-02-08 19:17:52,925 - INFO - Loading read assignments from minibam.isoquant/OUT/aux/OUT.save_NC_001637.1
2024-02-08 19:17:52,931 - INFO - Processing chromosome JAJGAP010000058
2024-02-08 19:17:52,932 - INFO - Processing chromosome JAJGAP010000059
2024-02-08 19:17:52,933 - INFO - Processing chromosome JAJGAP010000060
2024-02-08 19:17:52,935 - INFO - Loading read assignments from minibam.isoquant/OUT/aux/OUT.save_JAJGAP010000038
2024-02-08 19:17:52,942 - INFO - Processing chromosome JAJGAP010000061
2024-02-08 19:17:52,943 - INFO - Loading read assignments from minibam.isoquant/OUT/aux/OUT.save_JAJGAP010000039
2024-02-08 19:17:52,943 - INFO - Processing chromosome JAJGAP010000062
2024-02-08 19:17:52,949 - INFO - Processing chromosome JAJGAP010000063
2024-02-08 19:17:52,954 - INFO - Loading read assignments from minibam.isoquant/OUT/aux/OUT.save_JAJGAP010000040
2024-02-08 19:17:52,960 - INFO - Loading read assignments from minibam.isoquant/OUT/aux/OUT.save_JAJGAP010000041
2024-02-08 19:17:52,966 - INFO - Loading read assignments from minibam.isoquant/OUT/aux/OUT.save_JAJGAP010000042
2024-02-08 19:17:52,972 - INFO - Loading read assignments from minibam.isoquant/OUT/aux/OUT.save_JAJGAP010000043
2024-02-08 19:17:52,979 - INFO - Loading read assignments from minibam.isoquant/OUT/aux/OUT.save_JAJGAP010000045
2024-02-08 19:17:52,986 - INFO - Loading read assignments from minibam.isoquant/OUT/aux/OUT.save_JAJGAP010000044
2024-02-08 19:17:52,992 - INFO - Loading read assignments from minibam.isoquant/OUT/aux/OUT.save_JAJGAP010000046
2024-02-08 19:17:52,999 - INFO - Loading read assignments from minibam.isoquant/OUT/aux/OUT.save_JAJGAP010000047
2024-02-08 19:17:53,005 - INFO - Loading read assignments from minibam.isoquant/OUT/aux/OUT.save_JAJGAP010000050
2024-02-08 19:17:53,011 - INFO - Loading read assignments from minibam.isoquant/OUT/aux/OUT.save_JAJGAP010000049
2024-02-08 19:17:53,019 - INFO - Loading read assignments from minibam.isoquant/OUT/aux/OUT.save_JAJGAP010000048
2024-02-08 19:17:53,025 - INFO - Loading read assignments from minibam.isoquant/OUT/aux/OUT.save_JAJGAP010000052
2024-02-08 19:17:53,031 - INFO - Loading read assignments from minibam.isoquant/OUT/aux/OUT.save_JAJGAP010000054
2024-02-08 19:17:53,037 - INFO - Loading read assignments from minibam.isoquant/OUT/aux/OUT.save_JAJGAP010000051
2024-02-08 19:17:53,044 - INFO - Loading read assignments from minibam.isoquant/OUT/aux/OUT.save_JAJGAP010000053
2024-02-08 19:17:53,050 - INFO - Loading read assignments from minibam.isoquant/OUT/aux/OUT.save_JAJGAP010000056
2024-02-08 19:17:53,056 - INFO - Loading read assignments from minibam.isoquant/OUT/aux/OUT.save_JAJGAP010000057
2024-02-08 19:17:53,062 - INFO - Loading read assignments from minibam.isoquant/OUT/aux/OUT.save_JAJGAP010000055
2024-02-08 19:17:53,069 - INFO - Loading read assignments from minibam.isoquant/OUT/aux/OUT.save_JAJGAP010000058
2024-02-08 19:17:53,076 - INFO - Loading read assignments from minibam.isoquant/OUT/aux/OUT.save_JAJGAP010000059
2024-02-08 19:17:53,082 - INFO - Loading read assignments from minibam.isoquant/OUT/aux/OUT.save_JAJGAP010000060
2024-02-08 19:17:53,090 - INFO - Loading read assignments from minibam.isoquant/OUT/aux/OUT.save_JAJGAP010000061
2024-02-08 19:17:53,096 - INFO - Loading read assignments from minibam.isoquant/OUT/aux/OUT.save_JAJGAP010000062
2024-02-08 19:17:53,102 - INFO - Loading read assignments from minibam.isoquant/OUT/aux/OUT.save_JAJGAP010000063
2024-02-08 19:17:53,118 - INFO - Finished processing chromosome JAJGAP010000037
2024-02-08 19:17:53,119 - INFO - Finished processing chromosome JAJGAP010000035
2024-02-08 19:17:53,122 - INFO - Finished processing chromosome JAJGAP010000033
2024-02-08 19:17:53,124 - INFO - Processing chromosome JAJGAP010000064
2024-02-08 19:17:53,126 - INFO - Processing chromosome JAJGAP010000065
2024-02-08 19:17:53,127 - INFO - Finished processing chromosome JAJGAP010000034
2024-02-08 19:17:53,129 - INFO - Processing chromosome JAJGAP010000066
2024-02-08 19:17:53,131 - INFO - Finished processing chromosome NC_001637.1
2024-02-08 19:17:53,133 - INFO - Finished processing chromosome JAJGAP010000036
2024-02-08 19:17:53,136 - INFO - Finished processing chromosome JAJGAP010000038
2024-02-08 19:17:53,137 - INFO - Processing chromosome JAJGAP010000067
2024-02-08 19:17:53,139 - INFO - Finished processing chromosome JAJGAP010000039
2024-02-08 19:17:53,140 - INFO - Processing chromosome JAJGAP010000068
2024-02-08 19:17:53,142 - INFO - Processing chromosome JAJGAP010000069
2024-02-08 19:17:53,144 - INFO - Finished processing chromosome JAJGAP010000040
2024-02-08 19:17:53,146 - INFO - Processing chromosome JAJGAP010000070
2024-02-08 19:17:53,148 - INFO - Finished processing chromosome JAJGAP010000041
2024-02-08 19:17:53,150 - INFO - Finished processing chromosome JAJGAP010000042
2024-02-08 19:17:53,152 - INFO - Processing chromosome JAJGAP010000071
2024-02-08 19:17:53,154 - INFO - Finished processing chromosome JAJGAP010000043
2024-02-08 19:17:53,156 - INFO - Finished processing chromosome JAJGAP010000045
2024-02-08 19:17:53,159 - INFO - Finished processing chromosome JAJGAP010000044
2024-02-08 19:17:53,162 - INFO - Processing chromosome JAJGAP010000072
2024-02-08 19:17:53,163 - INFO - Finished processing chromosome JAJGAP010000046
2024-02-08 19:17:53,164 - INFO - Processing chromosome JAJGAP010000073
2024-02-08 19:17:53,167 - INFO - Finished processing chromosome JAJGAP010000047
2024-02-08 19:17:53,170 - INFO - Processing chromosome JAJGAP010000074
2024-02-08 19:17:53,171 - INFO - Finished processing chromosome JAJGAP010000049
2024-02-08 19:17:53,173 - INFO - Finished processing chromosome JAJGAP010000050
2024-02-08 19:17:53,174 - INFO - Processing chromosome JAJGAP010000075
2024-02-08 19:17:53,176 - INFO - Finished processing chromosome JAJGAP010000048
2024-02-08 19:17:53,178 - INFO - Processing chromosome JAJGAP010000076
2024-02-08 19:17:53,180 - INFO - Finished processing chromosome JAJGAP010000054
2024-02-08 19:17:53,182 - INFO - Finished processing chromosome JAJGAP010000052
2024-02-08 19:17:53,185 - INFO - Processing chromosome JAJGAP010000077
2024-02-08 19:17:53,185 - INFO - Loading read assignments from minibam.isoquant/OUT/aux/OUT.save_JAJGAP010000064
2024-02-08 19:17:53,186 - INFO - Finished processing chromosome JAJGAP010000051
2024-02-08 19:17:53,187 - INFO - Processing chromosome JAJGAP010000078
2024-02-08 19:17:53,189 - INFO - Finished processing chromosome JAJGAP010000053
2024-02-08 19:17:53,192 - INFO - Finished processing chromosome JAJGAP010000057
2024-02-08 19:17:53,192 - INFO - Loading read assignments from minibam.isoquant/OUT/aux/OUT.save_JAJGAP010000065
2024-02-08 19:17:53,193 - INFO - Finished processing chromosome JAJGAP010000056
2024-02-08 19:17:53,195 - INFO - Processing chromosome JAJGAP010000079
2024-02-08 19:17:53,197 - INFO - Finished processing chromosome JAJGAP010000055
2024-02-08 19:17:53,199 - INFO - Finished processing chromosome JAJGAP010000059
2024-02-08 19:17:53,200 - INFO - Processing chromosome JAJGAP010000080
2024-02-08 19:17:53,201 - INFO - Loading read assignments from minibam.isoquant/OUT/aux/OUT.save_JAJGAP010000066
2024-02-08 19:17:53,202 - INFO - Processing chromosome JAJGAP010000081
2024-02-08 19:17:53,203 - INFO - Finished processing chromosome JAJGAP010000060
2024-02-08 19:17:53,206 - INFO - Finished processing chromosome JAJGAP010000058
2024-02-08 19:17:53,209 - INFO - Processing chromosome JAJGAP010000082
2024-02-08 19:17:53,209 - INFO - Loading read assignments from minibam.isoquant/OUT/aux/OUT.save_JAJGAP010000067
2024-02-08 19:17:53,210 - INFO - Finished processing chromosome JAJGAP010000061
2024-02-08 19:17:53,211 - INFO - Finished processing chromosome JAJGAP010000062
2024-02-08 19:17:53,213 - INFO - Processing chromosome JAJGAP010000083
2024-02-08 19:17:53,215 - INFO - Processing chromosome JAJGAP010000084
2024-02-08 19:17:53,217 - INFO - Loading read assignments from minibam.isoquant/OUT/aux/OUT.save_JAJGAP010000068
2024-02-08 19:17:53,218 - INFO - Processing chromosome JAJGAP010000085
2024-02-08 19:17:53,222 - INFO - Processing chromosome JAJGAP010000086
2024-02-08 19:17:53,224 - INFO - Processing chromosome JAJGAP010000087
2024-02-08 19:17:53,224 - INFO - Loading read assignments from minibam.isoquant/OUT/aux/OUT.save_JAJGAP010000069
2024-02-08 19:17:53,228 - INFO - Processing chromosome JAJGAP010000088
2024-02-08 19:17:53,230 - INFO - Finished processing chromosome JAJGAP010000063
2024-02-08 19:17:53,231 - INFO - Processing chromosome JAJGAP010000089
2024-02-08 19:17:53,232 - INFO - Loading read assignments from minibam.isoquant/OUT/aux/OUT.save_JAJGAP010000070
2024-02-08 19:17:53,233 - INFO - Processing chromosome JAJGAP010000090
2024-02-08 19:17:53,238 - INFO - Processing chromosome JAJGAP010000091
2024-02-08 19:17:53,240 - INFO - Processing chromosome JAJGAP010000092
2024-02-08 19:17:53,241 - INFO - Loading read assignments from minibam.isoquant/OUT/aux/OUT.save_JAJGAP010000071
2024-02-08 19:17:53,244 - INFO - Processing chromosome JAJGAP010000093
2024-02-08 19:17:53,246 - INFO - Processing chromosome JAJGAP010000094
2024-02-08 19:17:53,250 - INFO - Loading read assignments from minibam.isoquant/OUT/aux/OUT.save_JAJGAP010000072
2024-02-08 19:17:53,252 - INFO - Processing chromosome JAJGAP010000095
2024-02-08 19:17:53,258 - INFO - Loading read assignments from minibam.isoquant/OUT/aux/OUT.save_JAJGAP010000073
2024-02-08 19:17:53,265 - INFO - Loading read assignments from minibam.isoquant/OUT/aux/OUT.save_JAJGAP010000074
2024-02-08 19:17:53,271 - INFO - Loading read assignments from minibam.isoquant/OUT/aux/OUT.save_JAJGAP010000075
2024-02-08 19:17:53,276 - INFO - Loading read assignments from minibam.isoquant/OUT/aux/OUT.save_JAJGAP010000076
2024-02-08 19:17:53,282 - INFO - Loading read assignments from minibam.isoquant/OUT/aux/OUT.save_JAJGAP010000078
2024-02-08 19:17:53,289 - INFO - Loading read assignments from minibam.isoquant/OUT/aux/OUT.save_JAJGAP010000077
2024-02-08 19:17:53,295 - INFO - Loading read assignments from minibam.isoquant/OUT/aux/OUT.save_JAJGAP010000079
2024-02-08 19:17:53,300 - INFO - Loading read assignments from minibam.isoquant/OUT/aux/OUT.save_JAJGAP010000081
2024-02-08 19:17:53,307 - INFO - Loading read assignments from minibam.isoquant/OUT/aux/OUT.save_JAJGAP010000080
2024-02-08 19:17:53,314 - INFO - Loading read assignments from minibam.isoquant/OUT/aux/OUT.save_JAJGAP010000082
2024-02-08 19:17:53,320 - INFO - Loading read assignments from minibam.isoquant/OUT/aux/OUT.save_JAJGAP010000083
2024-02-08 19:17:53,327 - INFO - Loading read assignments from minibam.isoquant/OUT/aux/OUT.save_JAJGAP010000084
2024-02-08 19:17:53,333 - INFO - Loading read assignments from minibam.isoquant/OUT/aux/OUT.save_JAJGAP010000085
2024-02-08 19:17:53,340 - INFO - Loading read assignments from minibam.isoquant/OUT/aux/OUT.save_JAJGAP010000086
2024-02-08 19:17:53,345 - INFO - Loading read assignments from minibam.isoquant/OUT/aux/OUT.save_JAJGAP010000087
2024-02-08 19:17:53,352 - INFO - Loading read assignments from minibam.isoquant/OUT/aux/OUT.save_JAJGAP010000088
2024-02-08 19:17:53,358 - INFO - Loading read assignments from minibam.isoquant/OUT/aux/OUT.save_JAJGAP010000089
2024-02-08 19:17:53,365 - INFO - Loading read assignments from minibam.isoquant/OUT/aux/OUT.save_JAJGAP010000090
2024-02-08 19:17:53,371 - INFO - Loading read assignments from minibam.isoquant/OUT/aux/OUT.save_JAJGAP010000091
2024-02-08 19:17:53,377 - INFO - Loading read assignments from minibam.isoquant/OUT/aux/OUT.save_JAJGAP010000092
2024-02-08 19:17:53,385 - INFO - Loading read assignments from minibam.isoquant/OUT/aux/OUT.save_JAJGAP010000093
2024-02-08 19:17:53,391 - INFO - Loading read assignments from minibam.isoquant/OUT/aux/OUT.save_JAJGAP010000094
2024-02-08 19:17:53,399 - INFO - Loading read assignments from minibam.isoquant/OUT/aux/OUT.save_JAJGAP010000095
2024-02-08 19:17:53,413 - INFO - Finished processing chromosome JAJGAP010000064
2024-02-08 19:17:53,414 - INFO - Finished processing chromosome JAJGAP010000065
2024-02-08 19:17:53,417 - INFO - Finished processing chromosome JAJGAP010000066
2024-02-08 19:17:53,419 - INFO - Processing chromosome JAJGAP010000096
2024-02-08 19:17:53,420 - INFO - Processing chromosome JAJGAP010000097
2024-02-08 19:17:53,423 - INFO - Finished processing chromosome JAJGAP010000068
2024-02-08 19:17:53,424 - INFO - Processing chromosome JAJGAP010000098
2024-02-08 19:17:53,425 - INFO - Finished processing chromosome JAJGAP010000067
2024-02-08 19:17:53,428 - INFO - Finished processing chromosome JAJGAP010000070
2024-02-08 19:17:53,431 - INFO - Finished processing chromosome JAJGAP010000071
2024-02-08 19:17:53,432 - INFO - Processing chromosome JAJGAP010000099
2024-02-08 19:17:53,433 - INFO - Finished processing chromosome JAJGAP010000069
2024-02-08 19:17:53,434 - INFO - Processing chromosome JAJGAP010000100
2024-02-08 19:17:53,437 - INFO - Finished processing chromosome JAJGAP010000093
2024-02-08 19:17:53,439 - INFO - Processing chromosome JAJGAP010000101
2024-02-08 19:17:53,441 - INFO - Finished processing chromosome JAJGAP010000075
2024-02-08 19:17:53,445 - INFO - Finished processing chromosome JAJGAP010000072
2024-02-08 19:17:53,449 - INFO - Processing chromosome JAJGAP010000102
2024-02-08 19:17:53,449 - INFO - Processing chromosome JAJGAP010000103
2024-02-08 19:17:53,452 - INFO - Finished processing chromosome JAJGAP010000074
2024-02-08 19:17:53,452 - INFO - Finished processing chromosome JAJGAP010000073
2024-02-08 19:17:53,454 - INFO - Finished processing chromosome JAJGAP010000080
2024-02-08 19:17:53,455 - INFO - Processing chromosome JAJGAP010000104
2024-02-08 19:17:53,458 - INFO - Finished processing chromosome JAJGAP010000076
2024-02-08 19:17:53,460 - INFO - Finished processing chromosome JAJGAP010000078
2024-02-08 19:17:53,461 - INFO - Processing chromosome JAJGAP010000105
2024-02-08 19:17:53,463 - INFO - Finished processing chromosome JAJGAP010000079
2024-02-08 19:17:53,465 - INFO - Processing chromosome JAJGAP010000106
2024-02-08 19:17:53,468 - INFO - Finished processing chromosome JAJGAP010000077
2024-02-08 19:17:53,470 - INFO - Finished processing chromosome JAJGAP010000081
2024-02-08 19:17:53,473 - INFO - Processing chromosome JAJGAP010000107
2024-02-08 19:17:53,473 - INFO - Processing chromosome JAJGAP010000108
2024-02-08 19:17:53,474 - INFO - Finished processing chromosome JAJGAP010000083
2024-02-08 19:17:53,477 - INFO - Processing chromosome JAJGAP010000109
2024-02-08 19:17:53,480 - INFO - Finished processing chromosome JAJGAP010000082
2024-02-08 19:17:53,482 - INFO - Processing chromosome JAJGAP010000110
2024-02-08 19:17:53,482 - INFO - Loading read assignments from minibam.isoquant/OUT/aux/OUT.save_JAJGAP010000097
2024-02-08 19:17:53,484 - INFO - Processing chromosome JAJGAP010000111
2024-02-08 19:17:53,484 - INFO - Finished processing chromosome JAJGAP010000085
2024-02-08 19:17:53,487 - INFO - Finished processing chromosome JAJGAP010000084
2024-02-08 19:17:53,489 - INFO - Finished processing chromosome JAJGAP010000087
2024-02-08 19:17:53,491 - INFO - Loading read assignments from minibam.isoquant/OUT/aux/OUT.save_JAJGAP010000096
2024-02-08 19:17:53,492 - INFO - Finished processing chromosome JAJGAP010000086
2024-02-08 19:17:53,492 - INFO - Finished processing chromosome JAJGAP010000088
2024-02-08 19:17:53,495 - INFO - Finished processing chromosome JAJGAP010000089
2024-02-08 19:17:53,498 - INFO - Loading read assignments from minibam.isoquant/OUT/aux/OUT.save_JAJGAP010000098
2024-02-08 19:17:53,499 - INFO - Finished processing chromosome JAJGAP010000090
2024-02-08 19:17:53,503 - INFO - Finished processing chromosome JAJGAP010000091
2024-02-08 19:17:53,504 - INFO - Finished processing chromosome JAJGAP010000092
2024-02-08 19:17:53,507 - INFO - Loading read assignments from minibam.isoquant/OUT/aux/OUT.save_JAJGAP010000099
2024-02-08 19:17:53,508 - INFO - Finished processing chromosome JAJGAP010000094
2024-02-08 19:17:53,514 - INFO - Loading read assignments from minibam.isoquant/OUT/aux/OUT.save_JAJGAP010000100
2024-02-08 19:17:53,521 - INFO - Loading read assignments from minibam.isoquant/OUT/aux/OUT.save_JAJGAP010000101
2024-02-08 19:17:53,527 - INFO - Loading read assignments from minibam.isoquant/OUT/aux/OUT.save_JAJGAP010000102
2024-02-08 19:17:53,529 - INFO - Finished processing chromosome JAJGAP010000095
2024-02-08 19:17:53,535 - INFO - Loading read assignments from minibam.isoquant/OUT/aux/OUT.save_JAJGAP010000103
2024-02-08 19:17:53,542 - INFO - Loading read assignments from minibam.isoquant/OUT/aux/OUT.save_JAJGAP010000104
2024-02-08 19:17:53,549 - INFO - Loading read assignments from minibam.isoquant/OUT/aux/OUT.save_JAJGAP010000105
2024-02-08 19:17:53,555 - INFO - Loading read assignments from minibam.isoquant/OUT/aux/OUT.save_JAJGAP010000106
2024-02-08 19:17:53,562 - INFO - Loading read assignments from minibam.isoquant/OUT/aux/OUT.save_JAJGAP010000107
2024-02-08 19:17:53,568 - INFO - Loading read assignments from minibam.isoquant/OUT/aux/OUT.save_JAJGAP010000108
2024-02-08 19:17:53,574 - INFO - Loading read assignments from minibam.isoquant/OUT/aux/OUT.save_JAJGAP010000109
2024-02-08 19:17:53,582 - INFO - Loading read assignments from minibam.isoquant/OUT/aux/OUT.save_JAJGAP010000110
2024-02-08 19:17:53,588 - INFO - Loading read assignments from minibam.isoquant/OUT/aux/OUT.save_JAJGAP010000111
2024-02-08 19:17:53,604 - INFO - Finished processing chromosome JAJGAP010000096
2024-02-08 19:17:53,605 - INFO - Finished processing chromosome JAJGAP010000103
2024-02-08 19:17:53,608 - INFO - Finished processing chromosome JAJGAP010000097
2024-02-08 19:17:53,611 - INFO - Finished processing chromosome JAJGAP010000098
2024-02-08 19:17:53,615 - INFO - Finished processing chromosome JAJGAP010000100
2024-02-08 19:17:53,618 - INFO - Finished processing chromosome JAJGAP010000099
2024-02-08 19:17:53,621 - INFO - Finished processing chromosome JAJGAP010000101
2024-02-08 19:17:53,623 - INFO - Finished processing chromosome JAJGAP010000102
2024-02-08 19:17:53,625 - INFO - Finished processing chromosome JAJGAP010000104
2024-02-08 19:17:53,626 - INFO - Finished processing chromosome JAJGAP010000106
2024-02-08 19:17:53,631 - INFO - Finished processing chromosome JAJGAP010000105
2024-02-08 19:17:53,633 - INFO - Finished processing chromosome JAJGAP010000108
2024-02-08 19:17:53,636 - INFO - Finished processing chromosome JAJGAP010000107
2024-02-08 19:17:53,640 - INFO - Finished processing chromosome JAJGAP010000109
2024-02-08 19:17:53,643 - INFO - Finished processing chromosome JAJGAP010000110
2024-02-08 19:17:53,644 - INFO - Finished processing chromosome JAJGAP010000111
2024-02-08 19:17:54,669 - INFO - Transcript model file minibam.isoquant/OUT/OUT.transcript_models.gtf
2024-02-08 19:17:54,669 - INFO - Transcript model statistics
2024-02-08 19:17:54,669 - INFO - novel_not_in_catalog: 8
2024-02-08 19:17:54,961 - INFO - Read assignment statistics
2024-02-08 19:17:54,962 - INFO - intergenic: 448
2024-02-08 19:17:56,226 - INFO - Processed sample OUT
2024-02-08 19:17:56,227 - INFO - Processed 1 sample
2024-02-08 19:17:56,227 - INFO -  === IsoQuant pipeline finished ===