Heinemann annotated ~3000 genes into a hierarchy of 149 biological pathways based on literature curation. Human genes are colored by orthologous group from human to this species: MitoOnly indicates all group members are mito, MixedMitoNonmito indicates only some of group members are mito in either/both species, MitoOnly1Species indicates all genes in one species and no homologs in other are mito, NoHomolog.
| HeinemannPathway | AthGenes |
|---|---|
| Biodegradation of Xenobiotics | AT1G64185, AT5G41650, AT1G06130, AT2G31350 |
| C1-metabolism | AT4G30000, AT5G14780, AT5G26780 |
| C1-metabolism > Methylenetetrahydrofolate dehydrogenase & Methenyltetrahydrofolate cyclohydrolase | AT2G38660 |
| C1-metabolism > tetrahydrofolate synthase | AT3G10160, AT5G41480 |
| Co-factor and vitamine metabolism | AT5G57300, AT1G04640, AT2G20860, AT1G01290, AT1G78590, AT5G49970, AT2G30920 |
| Co-factor and vitamine metabolism > biotin | AT2G43360, AT2G31955, AT1G22800 |
| Co-factor and vitamine metabolism > iron-sulphur clusters | AT2G16710, AT5G03905 |
| Co-factor and vitamine metabolism > pantothenate | AT2G46110, AT3G61530 |
| Co-factor and vitamine metabolism > riboflavin | AT4G21470, AT5G08340 |
| DNA | AT5G04895, AT1G18680, AT1G30010, AT1G71260, AT1G74350, AT3G10140, AT3G13226, AT3G15140, AT3G52050, AT3G52905, AT4G09730, AT4G31210, AT5G04050, AT5G11350, AT5G26940, AT5G46920, AT1G48650, AT3G10690, AT3G10270, AT5G04130, AT3G20540, AT5G50340, AT2G19490, AT2G01440, AT3G03590, AT1G31760, AT2G35605 |
| N-metabolism | AT3G03910 |
| N-metabolism > misc | AT1G02020 |
| OXPHOS | AT4G24570, AT3G54110 |
| OXPHOS > altNDH | AT2G29990, AT4G28220, AT4G05020 |
| OXPHOS > alternative oxidase | AT3G22370 |
| OXPHOS > assembly | AT2G20390, AT1G08220, AT2G34050, AT1G02410, AT5G56090, AT4G14145, AT2G43780, AT3G47930, AT3G08950, AT5G62050, AT3G17910, AT4G39740, AT3G51790 |
| OXPHOS > complex I | AT3G03070, AT3G62790, AT4G26965, AT5G67590, AT4G02580, AT2G20360, AT5G08530, AT5G37510, AT1G76200, AT5G47570, AT1G14450, AT2G02510, AT5G52840, AT5G08060, AT4G20150, AT2G42210, AT3G12260, AT2G31490, AT1G04630, AT2G33220, AT3G03100, AT2G02050, AT4G34700, AT5G47890, AT2G46540, AT3G07480, AT2G42310, AT3G57785, AT1G19580, AT1G47260, AT5G66510, AT5G63510, AT3G48680, AT4G00585, AT2G44620, AT1G65290, AT5G47630, AT4G16450, AT3G08610, AT3G27890, AT1G67350, AT2G27730, AT1G67785, AT3G18410, AT1G49140, AT3G06310, AT5G18800, AT4G28510, AT2G20530, AT5G11770, AT1G68680, AT3G10110, AT1G79010, AT1G16700 |
| OXPHOS > complex III | AT5G40810, AT3G27240, AT5G13430, AT5G13440, AT1G51980, AT3G16480, AT3G02090, AT2G40765, AT1G15120, AT4G32470, AT5G25450, AT3G10860, AT3G52730 |
| OXPHOS > complex IV | AT1G09794, AT1G15220, AT5G27760, AT4G00860, AT1G01170, AT4G21105, AT1G69750, AT3G15640, AT1G80230, AT2G47380, AT5G61310, AT4G37830, AT1G22450, AT4G28060, AT1G72020, AT1G22840, AT4G10040, AT1G48510 |
| OXPHOS > complex V | AT5G59613, AT5G60730, AT4G30010, AT2G07698, AT5G08690, AT5G47030, AT1G51650, AT5G04750, AT2G21870, AT2G33040, AT5G13450, AT3G52300, AT3G01130, AT5G15320, AT2G19680, AT4G26210, AT4G29480 |
| OXPHOS > electron transfer flavoprotein | AT1G50940, AT5G43430, AT2G43400 |
| OXPHOS > unspecified | AT4G01660, AT2G03690, AT4G21090 |
| Photosynthesis | AT2G35120, AT3G21740, AT4G17360, AT5G47435 |
| Photosynthesis > other electron carrier (ox/red) | AT4G32360 |
| RNA | AT5G26880, AT1G28090, AT2G17580, AT2G37510, AT3G23830, AT3G46020, AT3G59980, AT4G13850, AT5G06210, AT5G13830, AT5G17560, AT5G23690, AT5G54580, AT4G14790, AT1G27000, AT2G27330, AT5G66360, AT5G61030, AT1G74230, AT5G20040, AT1G68990, AT3G15000, AT5G14580, AT5G15700, AT3G21300, AT5G39840, AT3G25470 |
| RNA > HDA | AT5G09230 |
| RNA > RNA helicase | AT1G63250, AT3G22310, AT3G22330, AT5G08610, AT5G51080, AT5G63630 |
| RNA > pentatricopeptide (PPR) repeat-containing protein | AT1G02060, AT1G02420, AT1G03100, AT1G03510, AT1G03540, AT1G03560, AT1G04590, AT1G04840, AT1G05600, AT1G06710, AT1G07740, AT1G09190, AT1G09820, AT1G10270, AT1G11900, AT1G12300, AT1G13410, AT1G16480, AT1G17630, AT1G20230, AT1G20300, AT1G22960, AT1G26460, AT1G26900, AT1G28690, AT1G29710, AT1G30290, AT1G31430, AT1G31840, AT1G33350, AT1G34160, AT1G52620, AT1G52640, AT1G55630, AT1G56690, AT1G62260, AT1G62350, AT1G62670, AT1G62680, AT1G62910, AT1G62914, AT1G62930, AT1G63150, AT1G63400, AT1G64580, AT1G66345, AT1G68930, AT1G69290, AT1G69350, AT1G71060, AT1G71210, AT1G74580, AT1G74600, AT1G74630, AT1G76280, AT1G77010, AT1G77170, AT1G79540, AT1G80150, AT1G80880, AT2G01390, AT2G01510, AT2G02750, AT2G03380, AT2G03880, AT2G06000, AT2G13600, AT2G15690, AT2G15980, AT2G16880, AT2G17140, AT2G17670, AT2G18520, AT2G20540, AT2G21090, AT2G25580, AT2G27610, AT2G30780, AT2G32630, AT2G33680, AT2G34400, AT2G35030, AT2G36240, AT2G39230, AT2G39620, AT2G40240, AT2G41080, AT2G44880, AT2G48000, AT3G01580, AT3G02330, AT3G02490, AT3G03580, AT3G04130, AT3G05240, AT3G06920, AT3G07290, AT3G08820, AT3G09040, AT3G13150, AT3G13880, AT3G14730, AT3G15200, AT3G16010, AT3G18020, AT3G18970, AT3G22470, AT3G22670, AT3G23330, AT3G25210, AT3G26540, AT3G26782, AT3G46870, AT3G47530, AT3G47840, AT3G48250, AT3G49240, AT3G49730, AT3G51320, AT3G53360, AT3G54980, AT3G56030, AT3G56550, AT3G60960, AT3G60980, AT3G61170, AT3G61360, AT3G61520, AT3G62470, AT3G62890, AT3G63370, AT4G01570, AT4G02750, AT4G04790, AT4G08210, AT4G11690, AT4G14050, AT4G14820, AT4G14850, AT4G17616, AT4G19440, AT4G19890, AT4G20740, AT4G20770, AT4G21065, AT4G21300, AT4G21880, AT4G22760, AT4G28010, AT4G30700, AT4G32450, AT4G33170, AT4G33990, AT4G35850, AT4G37170, AT4G38010, AT4G38150, AT4G39530, AT5G01110, AT5G06400, AT5G08310, AT5G08510, AT5G09950, AT5G11310, AT5G12100, AT5G13230, AT5G14080, AT5G14770, AT5G15010, AT5G15300, AT5G15340, AT5G16420, AT5G16860, AT5G18390, AT5G18475, AT5G18950, AT5G19020, AT5G24830, AT5G38730, AT5G39350, AT5G39680, AT5G39710, AT5G40410, AT5G43790, AT5G44230, AT5G46100, AT5G47360, AT5G50990, AT5G52630, AT5G52850, AT5G59600, AT5G59900, AT5G61400, AT5G64320, AT5G65560, AT5G66500, AT5G66631, AT2G02150, AT5G61990, AT5G44780 |
| RNA > putative transcription regulator | AT1G02370, AT1G15480, AT1G34360, AT1G80270, AT2G20710, AT3G15590, AT4G01990, AT4G02820, AT4G21705, AT5G09450 |
| RNA > ribonucleases | AT1G55870, AT1G24090, AT3G25430, AT3G20390 |
| RNA > splicing | AT3G27550, AT3G25440 |
| RNA > unclassified | AT1G74120, AT3G60400, AT4G11060, AT4G19650, AT5G06810, AT5G40660, AT1G21150, AT1G61960, AT1G61970, AT1G61980, AT1G61990, AT1G62010, AT1G62085, AT1G62110, AT1G62120, AT1G62150, AT1G79220, AT2G44020, AT3G46950, AT5G23930, AT5G64950, AT3G18580, AT3G54826 |
| Redox | AT3G06050, AT3G15660, AT5G17770, AT5G10860, AT5G20080, AT3G10920, AT4G35460, AT2G35010, AT1G31020 |
| Redox > ascorbate | AT4G08390 |
| TCA / org transformation | AT1G58180, AT2G44350, AT3G60100, AT2G47510 |
| TCA / org transformation > 2-oxoglutarate dehydrogenase | AT4G26910, AT5G55070, AT3G55410, AT5G65750 |
| TCA / org transformation > IDH | AT4G35260, AT5G14590, AT2G17130, AT4G35650, AT5G03290, AT3G09810 |
| TCA / org transformation > aconitase | AT4G26970, AT2G05710 |
| TCA / org transformation > malate DH | AT1G53240, AT3G15020 |
| TCA / org transformation > malic | AT2G13560, AT4G00570, AT1G79750 |
| TCA / org transformation > pyruvate DH | AT1G59900, AT1G24180, AT5G50850, AT3G52200, AT3G13930, AT1G54220, AT1G48030, AT3G17240 |
| TCA / org transformation > succinate dehydrogenase | AT5G66760, AT2G18450, AT3G27380, AT5G40650, AT5G09600, AT2G46505, AT1G47420, AT1G08480, AT3G47833, AT5G62575 |
| TCA / org transformation > succinyl-CoA ligase | AT5G08300, AT5G23250, AT2G20420 |
| amino acid metabolism > amino acid degradation | AT4G13360, AT1G48420, AT1G53580, AT1G79440 |
| amino acid metabolism > amino acid degradation > aromatic aa | AT3G16700, AT4G15940 |
| amino acid metabolism > amino acid degradation > aspartate family | AT1G66520 |
| amino acid metabolism > amino acid degradation > branched chain group | AT2G26800, AT3G45300, AT1G03090, AT4G34030, AT1G55510, AT3G06850, AT5G09300, AT3G13450, AT3G08860, AT2G14170, AT4G20930 |
| amino acid metabolism > amino acid degradation > glutamate family | AT4G08900, AT5G46180, AT5G62530, AT3G30775, AT5G38710 |
| amino acid metabolism > amino acid degradation > glycine cleavage | AT1G32470, AT2G35370, AT4G33010, AT2G26080, AT1G11860 |
| amino acid metabolism > amino acid degradation > serine-glycine-cysteine group | AT1G79230, AT1G72190 |
| amino acid metabolism > amino acid synthesis | AT5G18170, AT5G07440, AT4G37930 |
| amino acid metabolism > amino acid synthesis > aspartate family | AT5G20980 |
| amino acid metabolism > amino acid synthesis > central amino acid metabolism | AT1G17290, AT1G72330, AT4G39660, AT2G38400, AT2G30970, AT3G22200 |
| amino acid metabolism > amino acid synthesis > serine-glycine-cysteine group | AT1G18490, AT5G65720, AT3G61440, AT3G59760, AT3G13110 |
| cell development | AT1G32580, AT1G79490, AT2G31340, AT2G35240, AT3G06790, AT3G07060, AT3G29970, AT3G48140, AT5G25940, AT5G44730, AT1G67440, AT4G03240 |
| cell wall | AT1G53000 |
| fermentation | AT3G48000, AT1G23800 |
| hormone metabolism | AT1G05670 |
| hormone metabolism > abscisic acid | AT4G36720 |
| hormone metabolism > auxin | AT1G17350 |
| hormone metabolism > jasmonate > synthesis-degradation | AT1G13280 |
| lipid metabolism | AT4G04870, AT3G10370, AT5G40610, AT4G04320, AT4G16700 |
| lipid metabolism > acyl coa ligase | AT2G17650 |
| lipid metabolism > ketoacyl ACP synthase | AT2G04540 |
| lipid metabolism > lipid degradation | AT4G16800, AT3G24360, AT3G60510, AT2G42450, AT1G49650 |
| metal handling | AT1G53030, AT3G15352, AT2G33740 |
| nucleotide metabolism | AT1G72040, AT1G75210, AT4G34570, AT3G06200, AT4G16566, AT5G59440, AT4G25280 |
| nucleotide metabolism > NUDIX hydrolases | AT1G28960, AT5G19460, AT5G47650 |
| nucleotide metabolism > adenylate kinase | AT2G37250, AT2G39270, AT3G01820, AT5G50370, AT5G63400 |
| nucleotide metabolism > nucleoside diphosphate kinase | AT4G11010 |
| nucleotide metabolism > nucleoside kinases | AT5G23070 |
| nucleotide metabolism > pyrimidine | AT5G23300 |
| protein metabolism | AT1G69020, AT5G51740, AT5G66960, AT3G08980, AT5G51540, AT1G06870, AT1G49630 |
| protein metabolism > AAA type | AT1G50140, AT3G19740, AT3G50930, AT3G50940, AT4G04180, AT4G36580, AT5G16930, AT2G18330, AT2G29080 |
| protein metabolism > elongation | AT1G07910, AT4G11120, AT4G26310, AT2G31060, AT1G45332, AT2G45030, AT4G02930 |
| protein metabolism > initiation | AT4G11160 |
| protein metabolism > metalloprotease | AT2G26140, AT1G07510, AT4G37040, AT1G09300 |
| protein metabolism > protein aa activation | AT4G33760, AT2G31170, AT3G46100, AT5G49030, AT3G13490, AT3G55400, AT2G25840, AT1G78910, AT3G19440, AT4G21770, AT2G30320, AT1G11870, AT3G02660 |
| protein metabolism > protein assembly and cofactor ligation | AT4G22220, AT3G20970, AT1G51390 |
| protein metabolism > protein folding | AT4G26780, AT1G14980, AT3G23990, AT2G33210, AT3G13860, AT5G55200, AT1G72420 |
| protein metabolism > protein postranslational modification | AT1G31160, AT3G04750, AT4G33920, AT1G23100, AT4G25130, AT5G53140, AT4G23660 |
| protein metabolism > protein targeting | AT5G27395 |
| protein metabolism > protein targeting > chloroplast | AT3G52420, AT2G30440 |
| protein metabolism > protein targeting > mitochondria | AT3G25120, AT3G44370, AT3G62880, AT5G11690, AT2G19080, AT2G46470, AT2G29530, AT1G61570, AT2G37410, AT1G17530, AT1G72750, AT2G36070, AT5G50810, AT3G46560, AT1G04070, AT5G43970, AT3G20000 |
| protein metabolism > protein targeting > peroxisomes | AT2G14860, AT3G24570 |
| protein metabolism > protein targeting > secretory pathway | AT1G29960, AT1G53530 |
| protein metabolism > protein targeting > unknown | AT5G51220 |
| protein metabolism > release | AT1G33330, AT1G62850, AT2G47020, AT1G56350 |
| protein metabolism > ribosomal protein > mitochondrial ribosome | AT1G70190, AT3G06040, AT4G37660, AT5G09770, AT5G64650, AT4G30930, AT5G66860, AT2G16930, AT4G31460, AT1G27435, AT5G55125, AT5G20180, AT5G53070, AT1G07210, AT3G26360, AT2G21290, AT1G60770, AT2G37230, AT4G36680, AT5G60960, AT3G51010, AT1G73940, AT4G05400, AT5G39800, AT5G40080, AT3G59650, AT1G14620, AT5G39600, AT3G01740, AT5G49210, AT1G26750, AT1G64600, AT4G21460, AT1G16870, AT5G44710, AT5G52370, AT3G18240, AT5G62270, AT1G61870, AT1G19520, AT1G55890, AT3G13160, AT3G02650, AT5G15980, AT4G22000, AT3G21465, AT4G15640, AT1G53645, AT1G18630, AT1G47278, AT4G35490, AT3G01790, AT5G64670, AT5G27820, AT1G52370, AT4G28360, AT4G39880, AT5G23535, AT1G07830, AT5G55140, AT3G17465, AT2G18400, AT3G22300, AT1G31817, AT1G77750, AT2G34520, AT1G15810, AT1G80620, AT1G49400, AT5G47320, AT3G03600, AT1G64880, AT2G19720, AT4G29430, AT1G24240, AT1G16740, AT4G23620, AT5G18790, AT5G56940, AT3G18760, AT3G12370, AT5G46160, AT2G42710, AT2G44065, AT2G20060, AT3G49080, AT4G31810 |
| protein metabolism > ribosomal protein > plastid ribosome | AT4G36420, AT5G15220 |
| protein metabolism > ribosomal protein > unknown | AT3G45020, AT4G11630, AT1G26740, AT3G13882, AT5G45590, AT1G08845 |
| protein metabolism > ribosome biogenesis | AT5G50110, AT1G50000 |
| protein metabolism > serine protease | AT1G18600, AT5G27660, AT5G36950, AT1G33360, AT5G49840, AT5G53350, AT5G26860, AT5G23140 |
| protein metabolism > ubiquitin | AT3G48030, AT1G63900, AT1G54150, AT3G03060, AT4G39370 |
| secondary metabolism | AT1G77670, AT2G33600, AT5G57590 |
| secondary metabolism > carotenoids | AT5G49555 |
| secondary metabolism > mevalonate pathway | AT2G34630, AT3G02780 |
| signalling | AT1G02270, AT1G48570, AT1G55040, AT5G17790, AT5G39960, AT1G30960, AT5G39900, AT3G59820, AT1G65540, AT4G32060, AT1G78010, AT2G41670, AT3G06483 |
| starch/sucrose metabolism > hexokinase | AT4G29130, AT2G19860 |
| starch/sucrose metabolism > invertases | AT1G56560 |
| stress > heat | AT1G28210, AT2G18465, AT2G41000, AT4G07990, AT4G37480, AT2G25140, AT2G35795, AT3G09700, AT5G03030, AT5G48030, AT5G06410, AT5G51440, AT3G07770, AT4G37910, AT5G09590, AT2G35720 |
| tetrapyrrole synthesis | AT5G63290, AT3G25660, AT1G48520, AT1G45110 |
| transport | AT3G08580, AT4G28630, AT5G58270, AT1G14560, AT1G63270, AT5G53650, AT5G20090, AT4G05590, AT4G22310, AT1G07030, AT1G14140 |
| transport > transport metabolite transporters at the mitochondrial membrane | AT4G28390, AT4G01100, AT5G61810, AT5G51050, AT5G07320, AT1G49410, AT1G64220, AT1G74240, AT2G37890, AT3G53940, AT3G55640, AT4G03115, AT4G15010, AT5G26200, AT5G46800, AT5G17400, AT5G66380, AT2G33820, AT5G01340, AT2G47490, AT1G25380, AT5G14040, AT3G48850, AT5G56450, AT4G39460, AT5G19760, AT3G21390, AT5G48970, AT2G46320, AT1G72820, AT5G15640, AT1G55900, AT5G41685, AT2G22500 |
| transport > transport metal | AT2G47830, AT4G33520, AT1G51610 |
| transport > transport misc | AT5G04780, AT3G59280 |
| transport > transport porins | AT1G50400, AT3G01280, AT5G67500, AT5G15090 |
| transport > transport unspecified anions | AT5G57490 |
| transport > transport unspecified cations | AT5G13490 |