Supplemental Data Files for all 168
genes in all three populations generated by Snap (Fry unpublished) and
Tagger (De Bakker
unpublished)
D’ plots of Linkage Disequilibrium for all three populations.
Regional genes are indicated by gray squares for reference. SNPs are indicated separately for each population. Black ticks are reliable polymorphic SNPs, blue ticks indicate monomorphism in that population and red SNPs indicate quality control failure by Hardy Weinberg or Mendel Error standards. Pairwise D’ is assessed for all polymorphic SNPs in each region. Red squares indicate strong LD with high confidence score of D’ estimate. Blue squares indicate strong LD, but low confidence score of D’ estimate. White squares indicate both SNPs removed for monomorphism and SNPs with low LD estimates based on D’. Gabriel et al. defined blocks are indicated by a black outline around the D’ squares.
Haplotype Block Variation Plots for all three populations.
Where Gabriel et al. blocks are called, haplotype structure is presented.
Genotypes for Reliable, Polymorphic Genic SNPs. Click here
Phased genotype files (.fphase), Haploview information files (.info), and full chromosomal information files (.snp) are provided.
Genotypes for Reliable, Polymorphic Genic and EHH SNPs. Click here
Phased genotype files (.fphase), Haploview information files (.info), and full chromosomal information files (.snp) are provided.
Tags for All Regions and Populations. Click here