Regions delineated using observed DNaseI data across 53 epigenomes,
annotated with the 5-mark 15-state model based on observed data
across 127 epigenomes (Roadmap + ENCODE).
All coordinates are based on the Human hg19 genome assembly.
Visualization of these putative regulatory regions in the context of the chromatin states can be seen
here.
Please indicate whether you're using any of these data by filling out this spreadsheet.
DNaseI regions selected with -log10(p) >= 2All DNaseI region coordinates, regardless of region type (prom, enh, dyadic, rest) in one BED file. The score column contains a rough indication of DNaseI signal strength in the epigenomes which had a DNaseI peak at that position. Promoters: 84,880 putative promoter regions (1.55% of genome)
ChromHMM state calls (RData)
BED files per epigenome Clustered with k=246, for a resolution of ~10k regions per cluster
Dyadics: 209,812 putative dyadic regions (1.64% of genome)
ChromHMM state calls (RData)
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DNaseI regions selected with -log10(p) >= 10All DNaseI region coordinates, regardless of region type (prom, enh, dyadic, rest) in one BED file. The score column contains a rough indication of DNaseI signal strength in the epigenomes which had a DNaseI peak at that position. Promoters: 45,501 putative promoter regions (1.24% of genome)
ChromHMM state calls (RData)
BED files per epigenome Clustered with k=62, for a resolution of ~10k regions per cluster
Dyadics: 54,269 putative dyadic regions (0.75% of genome)
ChromHMM state calls (RData)
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