clear; clf; 
hold on;
%% Plotting the boundaries for Scer chr17
plot([-5000,55000],[-5000,-5000],'k-');
plot([-5000,-5000],[-4500,-5500],'k-');
plot([55000,55000],[-4500,-5500],'k-');
%% Text at position 55000,-5300:  Scer chr17
h = text(55000.0, -5300.0, 'Scer chr17');
set(h,'VerticalAlignment','top')
set(h,'HorizontalAlignment','right')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
%% Hooks at the end of Scer chr17
plot([-5000,-5000,-5000],[-5500,-5500,-5400],'k-');
plot([55000,55000,55000],[-4500,-4500,-4600],'k-');
%% 
%% Arrow from [1,11] to [-5000,-5000].  Width 300, indent 9.0, length 10
fill([1.00,2.00,11.00,2.00,1.00,1.00], ...
	[-5300.00,-5300.00,-5000.00,-4700.00,-4700.00,-5300.00], 'm-');
%% Text at position 6,-4700:  9S_rRNA_1 (9S_RRNA_1)
h = text(6.0, -4700.0, '9S_rRNA_1 (9S_RRNA_1)');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [731,802] to [-5000,-5000].  Width 300, indent 63.9, length 71
fill([731.00,738.10,802.00,738.10,731.00,731.00], ...
	[-5300.00,-5300.00,-5000.00,-4700.00,-4700.00,-5300.00], 'c-');
%% Text at position 766,-4700:  tP(UGG)Q (TP(UGG)Q)
h = text(766.0, -4700.0, 'tP(UGG)Q (TP(UGG)Q)');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [3952,4338] to [-5000,-5000].  Width 300, indent 347.4, length 386
fill([3952.00,3990.60,4338.00,3990.60,3952.00,3952.00], ...
	[-5300.00,-5300.00,-5000.00,-4700.00,-4700.00,-5300.00], 'w-');
%% Text at position 4145,-4700:  Q0010
h = text(4145.0, -4700.0, 'Q0010');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [4254,4415] to [-5000,-5000].  Width 300, indent 144.9, length 161
fill([4254.00,4270.10,4415.00,4270.10,4254.00,4254.00], ...
	[-5300.00,-5300.00,-5000.00,-4700.00,-4700.00,-5300.00], 'w-');
%% Text at position 4334,-4700:  Q0017
h = text(4334.0, -4700.0, 'Q0017');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [6546,8194] to [-5000,-5000].  Width 300, indent 400, length 1648
fill([6546.00,7794.00,8194.00,7794.00,6546.00,6546.00], ...
	[-5300.00,-5300.00,-5000.00,-4700.00,-4700.00,-5300.00], 'm-');
%% Text at position 7370,-4700:  15S_rRNA_2 (15S_RRNA_2)
h = text(7370.0, -4700.0, '15S_rRNA_2 (15S_RRNA_2)');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [9374,9447] to [-5000,-5000].  Width 300, indent 65.7, length 73
fill([9374.00,9381.30,9447.00,9381.30,9374.00,9374.00], ...
	[-5300.00,-5300.00,-5000.00,-4700.00,-4700.00,-5300.00], 'c-');
%% Text at position 9410,-4700:  tW(UCA)Q (TW(UCA)Q)
h = text(9410.0, -4700.0, 'tW(UCA)Q (TW(UCA)Q)');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [11667,11957] to [-5000,-5000].  Width 300, indent 261.0, length 290
fill([11667.00,11696.00,11957.00,11696.00,11667.00,11667.00], ...
	[-5300.00,-5300.00,-5000.00,-4700.00,-4700.00,-5300.00], 'w-');
%% Text at position 11812,-4700:  Q0032
h = text(11812.0, -4700.0, 'Q0032');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [13818,16322] to [-5000,-5000].  Width 300, indent 400, length 2504
fill([13818.00,15922.00,16322.00,15922.00,13818.00,13818.00], ...
	[-5300.00,-5300.00,-5000.00,-4700.00,-4700.00,-5300.00], 'w-');
%% Text at position 15070,-4700:  Q0050 (AI1)
h = text(15070.0, -4700.0, 'Q0050 (AI1)');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [13818,18830] to [-5000,-5000].  Width 300, indent 400, length 5012
fill([13818.00,18430.00,18830.00,18430.00,13818.00,13818.00], ...
	[-5300.00,-5300.00,-5000.00,-4700.00,-4700.00,-5300.00], 'w-');
%% Text at position 16324,-4700:  Q0055 (AI2)
h = text(16324.0, -4700.0, 'Q0055 (AI2)');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [13818,19996] to [-5000,-5000].  Width 300, indent 400, length 6178
fill([13818.00,19596.00,19996.00,19596.00,13818.00,13818.00], ...
	[-5300.00,-5300.00,-5000.00,-4700.00,-4700.00,-5300.00], 'b-');
%% Text at position 16907,-4700:  Q0060 (AI3)
h = text(16907.0, -4700.0, 'Q0060 (AI3)');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [13818,21935] to [-5000,-5000].  Width 300, indent 400, length 8117
fill([13818.00,21535.00,21935.00,21535.00,13818.00,13818.00], ...
	[-5300.00,-5300.00,-5000.00,-4700.00,-4700.00,-5300.00], 'w-');
%% Text at position 17876,-4700:  Q0065 (AI4)
h = text(17876.0, -4700.0, 'Q0065 (AI4)');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [13818,23167] to [-5000,-5000].  Width 300, indent 400, length 9349
fill([13818.00,22767.00,23167.00,22767.00,13818.00,13818.00], ...
	[-5300.00,-5300.00,-5000.00,-4700.00,-4700.00,-5300.00], 'w-');
%% Text at position 18492,-4700:  Q0070 (AI5_ALPHA)
h = text(18492.0, -4700.0, 'Q0070 (AI5_ALPHA)');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [13818,26701] to [-5000,-5000].  Width 300, indent 400, length 12883
fill([13818.00,26301.00,26701.00,26301.00,13818.00,13818.00], ...
	[-5300.00,-5300.00,-5000.00,-4700.00,-4700.00,-5300.00], 'r-');
%% Text at position 20259,-4700:  Q0045 (COX1)
h = text(20259.0, -4700.0, 'Q0045 (COX1)');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [24156,25255] to [-5000,-5000].  Width 300, indent 400, length 1099
fill([24156.00,24855.00,25255.00,24855.00,24156.00,24156.00], ...
	[-5300.00,-5300.00,-5000.00,-4700.00,-4700.00,-5300.00], 'w-');
%% Text at position 24705,-4700:  Q0075 (AI5_BETA)
h = text(24705.0, -4700.0, 'Q0075 (AI5_BETA)');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [27666,27812] to [-5000,-5000].  Width 300, indent 131.4, length 146
fill([27666.00,27680.60,27812.00,27680.60,27666.00,27666.00], ...
	[-5300.00,-5300.00,-5000.00,-4700.00,-4700.00,-5300.00], 'w-');
%% Text at position 27739,-4700:  Q0080 (AAP1)
h = text(27739.0, -4700.0, 'Q0080 (AAP1)');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [28487,29266] to [-5000,-5000].  Width 300, indent 400, length 779
fill([28487.00,28866.00,29266.00,28866.00,28487.00,28487.00], ...
	[-5300.00,-5300.00,-5000.00,-4700.00,-4700.00,-5300.00], 'w-');
%% Text at position 28876,-4700:  Q0085 (ATP6)
h = text(28876.0, -4700.0, 'Q0085 (ATP6)');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [30874,31014] to [-5000,-5000].  Width 300, indent 126.0, length 140
fill([30874.00,30888.00,31014.00,30888.00,30874.00,30874.00], ...
	[-5300.00,-5300.00,-5000.00,-4700.00,-4700.00,-5300.00], 'w-');
%% Text at position 30944,-4700:  Q0092
h = text(30944.0, -4700.0, 'Q0092');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [35373,35444] to [-5000,-5000].  Width 300, indent 63.9, length 71
fill([35373.00,35380.10,35444.00,35380.10,35373.00,35373.00], ...
	[-5300.00,-5300.00,-5000.00,-4700.00,-4700.00,-5300.00], 'c-');
%% Text at position 35408,-4700:  tE(UUC)Q (TE(UUC)Q)
h = text(35408.0, -4700.0, 'tE(UUC)Q (TE(UUC)Q)');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [36540,38579] to [-5000,-5000].  Width 300, indent 400, length 2039
fill([36540.00,38179.00,38579.00,38179.00,36540.00,36540.00], ...
	[-5300.00,-5300.00,-5000.00,-4700.00,-4700.00,-5300.00], 'w-');
%% Text at position 37559,-4700:  Q0110 (BI2)
h = text(37559.0, -4700.0, 'Q0110 (BI2)');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [36540,40265] to [-5000,-5000].  Width 300, indent 400, length 3725
fill([36540.00,39865.00,40265.00,39865.00,36540.00,36540.00], ...
	[-5300.00,-5300.00,-5000.00,-4700.00,-4700.00,-5300.00], 'w-');
%% Text at position 38402,-4700:  Q0115 (BI3)
h = text(38402.0, -4700.0, 'Q0115 (BI3)');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [36540,42251] to [-5000,-5000].  Width 300, indent 400, length 5711
fill([36540.00,41851.00,42251.00,41851.00,36540.00,36540.00], ...
	[-5300.00,-5300.00,-5000.00,-4700.00,-4700.00,-5300.00], 'w-');
%% Text at position 39395,-4700:  Q0120 (BI4)
h = text(39395.0, -4700.0, 'Q0120 (BI4)');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [36540,43647] to [-5000,-5000].  Width 300, indent 400, length 7107
fill([36540.00,43247.00,43647.00,43247.00,36540.00,36540.00], ...
	[-5300.00,-5300.00,-5000.00,-4700.00,-4700.00,-5300.00], 'w-');
%% Text at position 40093,-4700:  Q0105 (COB)
h = text(40093.0, -4700.0, 'Q0105 (COB)');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [46723,46953] to [-5000,-5000].  Width 300, indent 207.0, length 230
fill([46723.00,46746.00,46953.00,46746.00,46723.00,46723.00], ...
	[-5300.00,-5300.00,-5000.00,-4700.00,-4700.00,-5300.00], 'w-');
%% Text at position 46838,-4700:  Q0130 (OLI1)
h = text(46838.0, -4700.0, 'Q0130 (OLI1)');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [48201,48290] to [-5000,-5000].  Width 300, indent 80.1, length 89
fill([48201.00,48209.90,48290.00,48209.90,48201.00,48201.00], ...
	[-5300.00,-5300.00,-5000.00,-4700.00,-4700.00,-5300.00], 'c-');
%% Text at position 48245,-4700:  tS(UGA)Q2 (TS(UGA)Q2)
h = text(48245.0, -4700.0, 'tS(UGA)Q2 (TS(UGA)Q2)');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [48901,50097] to [-5000,-5000].  Width 300, indent 400, length 1196
fill([48901.00,49697.00,50097.00,49697.00,48901.00,48901.00], ...
	[-5300.00,-5300.00,-5000.00,-4700.00,-4700.00,-5300.00], 'b-');
%% Text at position 49499,-4700:  Q0140 (VAR1)
h = text(49499.0, -4700.0, 'Q0140 (VAR1)');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [51052,51228] to [-5000,-5000].  Width 300, indent 158.4, length 176
fill([51052.00,51069.60,51228.00,51069.60,51052.00,51052.00], ...
	[-5300.00,-5300.00,-5000.00,-4700.00,-4700.00,-5300.00], 'w-');
%% Text at position 51140,-4700:  Q0142
h = text(51140.0, -4700.0, 'Q0142');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [51277,51429] to [-5000,-5000].  Width 300, indent 136.8, length 152
fill([51277.00,51292.20,51429.00,51292.20,51277.00,51277.00], ...
	[-5300.00,-5300.00,-5000.00,-4700.00,-4700.00,-5300.00], 'w-');
%% Text at position 51353,-4700:  Q0143
h = text(51353.0, -4700.0, 'Q0143');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [54109,54438] to [-5000,-5000].  Width 300, indent 296.1, length 329
fill([54109.00,54141.90,54438.00,54141.90,54109.00,54109.00], ...
	[-5300.00,-5300.00,-5000.00,-4700.00,-4700.00,-5300.00], 'w-');
%% Text at position 54273,-4700:  Q0144
h = text(54273.0, -4700.0, 'Q0144');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% Plotting the boundaries for Spar contig315
plot([-20000,30080],[-10000,-10000],'k-');
plot([-20000,-20000],[-9500,-10500],'k-');
plot([30080,30080],[-9500,-10500],'k-');
%% Text at position 30080,-10300:  Spar contig315
h = text(30080.0, -10300.0, 'Spar contig315');
set(h,'VerticalAlignment','top')
set(h,'HorizontalAlignment','right')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
%% Hooks at the end of Spar contig315
plot([-20000,-19750,-19750],[-10500,-10500,-10400],'k-');
plot([30080,30139,30139],[-9500,-9500,-9600],'k-');
%% 
%% Arrow from [4329,5600] to [-10000,-10000].  Width 300, indent 400, length 1271
fill([4329.00,5200.00,5600.00,5200.00,4329.00,4329.00], ...
	[-10300.00,-10300.00,-10000.00,-9700.00,-9700.00,-10300.00], 'r-');
%% Text at position 4965,-9700:  YOL126C
h = text(4965.0, -9700.0, 'YOL126C');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [6455,6243] to [-10000,-10000].  Width 300, indent 190.8, length 212
fill([6455.00,6433.80,6243.00,6433.80,6455.00,6455.00], ...
	[-9700.00,-9700.00,-10000.00,-10300.00,-10300.00,-9700.00], 'r-');
%% Text at position 6349,-9700:  YOL127W
h = text(6349.0, -9700.0, 'YOL127W');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [7964,9091] to [-10000,-10000].  Width 300, indent 400, length 1127
fill([7964.00,8691.00,9091.00,8691.00,7964.00,7964.00], ...
	[-10300.00,-10300.00,-10000.00,-9700.00,-9700.00,-10300.00], 'r-');
%% Text at position 8528,-9700:  YOL128C
h = text(8528.0, -9700.0, 'YOL128C');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [9912,9358] to [-10000,-10000].  Width 300, indent 400, length 554
fill([9912.00,9758.00,9358.00,9758.00,9912.00,9912.00], ...
	[-9700.00,-9700.00,-10000.00,-10300.00,-10300.00,-9700.00], 'r-');
%% Text at position 9635,-9700:  YOL129W
h = text(9635.0, -9700.0, 'YOL129W');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [13074,10495] to [-10000,-10000].  Width 300, indent 400, length 2579
fill([13074.00,10895.00,10495.00,10895.00,13074.00,13074.00], ...
	[-9700.00,-9700.00,-10000.00,-10300.00,-10300.00,-9700.00], 'r-');
%% Text at position 11785,-9700:  YOL130W
h = text(11785.0, -9700.0, 'YOL130W');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [13818,14036] to [-10000,-10000].  Width 300, indent 196.2, length 218
fill([13818.00,13839.80,14036.00,13839.80,13818.00,13818.00], ...
	[-10300.00,-10300.00,-10000.00,-9700.00,-9700.00,-10300.00], 'r-');
%% Text at position 13927,-9700:  
h = text(13927.0, -9700.0, '');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [14651,14325] to [-10000,-10000].  Width 300, indent 293.4, length 326
fill([14651.00,14618.40,14325.00,14618.40,14651.00,14651.00], ...
	[-9700.00,-9700.00,-10000.00,-10300.00,-10300.00,-9700.00], 'r-');
%% Text at position 14488,-9700:  YOL131W
h = text(14488.0, -9700.0, 'YOL131W');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [16378,14966] to [-10000,-10000].  Width 300, indent 400, length 1412
fill([16378.00,15366.00,14966.00,15366.00,16378.00,16378.00], ...
	[-9700.00,-9700.00,-10000.00,-10300.00,-10300.00,-9700.00], 'r-');
%% Text at position 15672,-9700:  YOL132W
h = text(15672.0, -9700.0, 'YOL132W');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [17369,17004] to [-10000,-10000].  Width 300, indent 328.5, length 365
fill([17369.00,17332.50,17004.00,17332.50,17369.00,17369.00], ...
	[-9700.00,-9700.00,-10000.00,-10300.00,-10300.00,-9700.00], 'r-');
%% Text at position 17187,-9700:  YOL133W
h = text(17187.0, -9700.0, 'YOL133W');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [17648,18316] to [-10000,-10000].  Width 300, indent 400, length 668
fill([17648.00,17916.00,18316.00,17916.00,17648.00,17648.00], ...
	[-10300.00,-10300.00,-10000.00,-9700.00,-9700.00,-10300.00], 'r-');
%% Text at position 17982,-9700:  YOL135C
h = text(17982.0, -9700.0, 'YOL135C');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [18690,18322] to [-10000,-10000].  Width 300, indent 331.2, length 368
fill([18690.00,18653.20,18322.00,18653.20,18690.00,18690.00], ...
	[-9700.00,-9700.00,-10000.00,-10300.00,-10300.00,-9700.00], 'w-');
%% Text at position 18506,-9700:  NoHit19534
h = text(18506.0, -9700.0, 'NoHit19534');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [18950,20143] to [-10000,-10000].  Width 300, indent 400, length 1193
fill([18950.00,19743.00,20143.00,19743.00,18950.00,18950.00], ...
	[-10300.00,-10300.00,-10000.00,-9700.00,-9700.00,-10300.00], 'r-');
%% Text at position 19547,-9700:  YOL136C
h = text(19547.0, -9700.0, 'YOL136C');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [22178,20580] to [-10000,-10000].  Width 300, indent 400, length 1598
fill([22178.00,20980.00,20580.00,20980.00,22178.00,22178.00], ...
	[-9700.00,-9700.00,-10000.00,-10300.00,-10300.00,-9700.00], 'r-');
%% Text at position 21379,-9700:  YOL137W
h = text(21379.0, -9700.0, 'YOL137W');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% Plotting the boundaries for Smik contig949
plot([12618,42003],[-15000,-15000],'k-');
plot([12618,12618],[-14500,-15500],'k-');
plot([42003,42003],[-14500,-15500],'k-');
%% Text at position 42003,-15300:  Smik contig949
h = text(42003.0, -15300.0, 'Smik contig949');
set(h,'VerticalAlignment','top')
set(h,'HorizontalAlignment','right')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
%% Hooks at the end of Smik contig949
plot([12618,10514,10514],[-15500,-15500,-15400],'k-');
plot([42003,42003,42003],[-14500,-14500,-14600],'k-');
%% 
%% Arrow from [31852,29783] to [-15000,-15000].  Width 300, indent 400, length 2069
fill([31852.00,30183.00,29783.00,30183.00,31852.00,31852.00], ...
	[-14700.00,-14700.00,-15000.00,-15300.00,-15300.00,-14700.00], 'r-');
%% Text at position 30817,-14700:  YAR035W
h = text(30817.0, -14700.0, 'YAR035W');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [32804,32202] to [-15000,-15000].  Width 300, indent 400, length 602
fill([32804.00,32602.00,32202.00,32602.00,32804.00,32804.00], ...
	[-14700.00,-14700.00,-15000.00,-15300.00,-15300.00,-14700.00], 'g-');
%% Text at position 32503,-14700:  YGL053W
h = text(32503.0, -14700.0, 'YGL053W');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [33649,33275] to [-15000,-15000].  Width 300, indent 336.6, length 374
fill([33649.00,33611.60,33275.00,33611.60,33649.00,33649.00], ...
	[-14700.00,-14700.00,-15000.00,-15300.00,-15300.00,-14700.00], 'g-');
%% Text at position 33462,-14700:  YGL053W
h = text(33462.0, -14700.0, 'YGL053W');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [34294,33980] to [-15000,-15000].  Width 300, indent 282.6, length 314
fill([34294.00,34262.60,33980.00,34262.60,34294.00,34294.00], ...
	[-14700.00,-14700.00,-15000.00,-15300.00,-15300.00,-14700.00], 'g-');
%% Text at position 34137,-14700:  YAR027W
h = text(34137.0, -14700.0, 'YAR027W');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [36540,36707] to [-15000,-15000].  Width 300, indent 150.3, length 167
fill([36540.00,36556.70,36707.00,36556.70,36540.00,36540.00], ...
	[-15300.00,-15300.00,-15000.00,-14700.00,-14700.00,-15300.00], 'r-');
%% Text at position 36623,-14700:  
h = text(36623.0, -14700.0, '');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [37804,37568] to [-15000,-15000].  Width 300, indent 212.4, length 236
fill([37804.00,37780.40,37568.00,37780.40,37804.00,37804.00], ...
	[-14700.00,-14700.00,-15000.00,-15300.00,-15300.00,-14700.00], 'y-');
%% Text at position 37686,-14700:  ParYAR028W
h = text(37686.0, -14700.0, 'ParYAR028W');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [38220,38390] to [-15000,-15000].  Width 300, indent 153.0, length 170
fill([38220.00,38237.00,38390.00,38237.00,38220.00,38220.00], ...
	[-15300.00,-15300.00,-15000.00,-14700.00,-14700.00,-15300.00], 'w-');
%% Text at position 38305,-14700:  NoHit458
h = text(38305.0, -14700.0, 'NoHit458');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [39341,38754] to [-15000,-15000].  Width 300, indent 400, length 587
fill([39341.00,39154.00,38754.00,39154.00,39341.00,39341.00], ...
	[-14700.00,-14700.00,-15000.00,-15300.00,-15300.00,-14700.00], 'g-');
%% Text at position 39047,-14700:  YAR027W
h = text(39047.0, -14700.0, 'YAR027W');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [40474,39758] to [-15000,-15000].  Width 300, indent 400, length 716
fill([40474.00,40158.00,39758.00,40158.00,40474.00,40474.00], ...
	[-14700.00,-14700.00,-15000.00,-15300.00,-15300.00,-14700.00], 'g-');
%% Text at position 40116,-14700:  YAR033W
h = text(40116.0, -14700.0, 'YAR033W');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [41511,40936] to [-15000,-15000].  Width 300, indent 400, length 575
fill([41511.00,41336.00,40936.00,41336.00,41511.00,41511.00], ...
	[-14700.00,-14700.00,-15000.00,-15300.00,-15300.00,-14700.00], 'g-');
%% Text at position 41223,-14700:  YAR027W
h = text(41223.0, -14700.0, 'YAR027W');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [36313,37665] to [-15000,-15000].  Width 300, indent 400, length 1352
fill([36313.00,37265.00,37665.00,37265.00,36313.00,36313.00], ...
	[-15300.00,-15300.00,-15000.00,-14700.00,-14700.00,-15300.00], 'm-');
%% Text at position 36989,-14700:  TyElmt_24 hits at 53%
h = text(36989.0, -14700.0, 'TyElmt_24 hits at 53%');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [41753,42003] to [-15000,-15000].  Width 300, indent 225.0, length 250
fill([41753.00,41778.00,42003.00,41778.00,41753.00,41753.00], ...
	[-15300.00,-15300.00,-15000.00,-14700.00,-14700.00,-15300.00], 'm-');
%% Text at position 41878,-14700:  TyElmt_227 hits at 68%
h = text(41878.0, -14700.0, 'TyElmt_227 hits at 68%');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% Plotting the boundaries for Smik contig1544
plot([46242,48378],[-17500,-17500],'k-');
plot([46242,46242],[-17000,-18000],'k-');
plot([48378,48378],[-17000,-18000],'k-');
%% Text at position 48378,-17800:  Smik contig1544
h = text(48378.0, -17800.0, 'Smik contig1544');
set(h,'VerticalAlignment','top')
set(h,'HorizontalAlignment','right')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
%% Hooks at the end of Smik contig1544
plot([46242,46242,46242],[-18000,-18000,-17900],'k-');
plot([48378,48378,48378],[-17000,-17000,-17100],'k-');
%% 
%% Arrow from [46723,46953] to [-17500,-17500].  Width 300, indent 207.0, length 230
fill([46723.00,46746.00,46953.00,46746.00,46723.00,46723.00], ...
	[-17800.00,-17800.00,-17500.00,-17200.00,-17200.00,-17800.00], 'r-');
%% Text at position 46838,-17200:  
h = text(46838.0, -17200.0, '');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [46243,47553] to [-17500,-17500].  Width 300, indent 400, length 1310
fill([46243.00,47153.00,47553.00,47153.00,46243.00,46243.00], ...
	[-17800.00,-17800.00,-17500.00,-17200.00,-17200.00,-17800.00], 'm-');
%% Text at position 46898,-17200:  TyElmt_64 hits at 54%
h = text(46898.0, -17200.0, 'TyElmt_64 hits at 54%');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [47596,48378] to [-17500,-17500].  Width 300, indent 400, length 782
fill([47596.00,47978.00,48378.00,47978.00,47596.00,47596.00], ...
	[-17800.00,-17800.00,-17500.00,-17200.00,-17200.00,-17800.00], 'm-');
%% Text at position 47987,-17200:  TyElmt_86 hits at 55%
h = text(47987.0, -17200.0, 'TyElmt_86 hits at 55%');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% Plotting the boundaries for Smik contig7
plot([48552,49426],[-20000,-20000],'k-');
plot([48552,48552],[-19500,-20500],'k-');
plot([49426,49426],[-19500,-20500],'k-');
%% Text at position 49426,-20300:  Smik contig7
h = text(49426.0, -20300.0, 'Smik contig7');
set(h,'VerticalAlignment','top')
set(h,'HorizontalAlignment','right')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
%% Hooks at the end of Smik contig7
plot([48552,48355,48355],[-20500,-20500,-20400],'k-');
plot([49426,51051,51051],[-19500,-19500,-19600],'k-');
%% 
%% Arrow from [48801,49424] to [-20000,-20000].  Width 300, indent 400, length 623
fill([48801.00,49024.00,49424.00,49024.00,48801.00,48801.00], ...
	[-20300.00,-20300.00,-20000.00,-19700.00,-19700.00,-20300.00], 'b-');
%% Text at position 49112,-19700:  YBR112C
h = text(49112.0, -19700.0, 'YBR112C');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [48901,49425] to [-20000,-20000].  Width 300, indent 400, length 524
fill([48901.00,49025.00,49425.00,49025.00,48901.00,48901.00], ...
	[-20300.00,-20300.00,-20000.00,-19700.00,-19700.00,-20300.00], 'r-');
%% Text at position 49163,-19700:  
h = text(49163.0, -19700.0, '');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% Plotting the boundaries for Sbay contig77
plot([11734,17433],[-25000,-25000],'k-');
plot([11734,11734],[-24500,-25500],'k-');
plot([17433,17433],[-24500,-25500],'k-');
%% Text at position 17433,-25300:  Sbay contig77
h = text(17433.0, -25300.0, 'Sbay contig77');
set(h,'VerticalAlignment','top')
set(h,'HorizontalAlignment','right')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
%% Hooks at the end of Sbay contig77
plot([11734,11330,11330],[-25500,-25500,-25400],'k-');
plot([17433,17294,17294],[-24500,-24500,-24600],'k-');
%% 
%% Arrow from [14180,13688] to [-25000,-25000].  Width 300, indent 400, length 492
fill([14180.00,14088.00,13688.00,14088.00,14180.00,14180.00], ...
	[-24700.00,-24700.00,-25000.00,-25300.00,-25300.00,-24700.00], 'm-');
%% Text at position 13934,-24700:  TyElmt_6 hits at 61%
h = text(13934.0, -24700.0, 'TyElmt_6 hits at 61%');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [11785,12717] to [-25000,-25000].  Width 300, indent 400, length 932
fill([11785.00,12317.00,12717.00,12317.00,11785.00,11785.00], ...
	[-25300.00,-25300.00,-25000.00,-24700.00,-24700.00,-25300.00], 'r-');
%% Text at position 12251,-24700:  YGL043W
h = text(12251.0, -24700.0, 'YGL043W');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [13173,13604] to [-25000,-25000].  Width 300, indent 387.9, length 431
fill([13173.00,13216.10,13604.00,13216.10,13173.00,13173.00], ...
	[-25300.00,-25300.00,-25000.00,-24700.00,-24700.00,-25300.00], 'w-');
%% Text at position 13389,-24700:  NoHit8576
h = text(13389.0, -24700.0, 'NoHit8576');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [13818,13979] to [-25000,-25000].  Width 300, indent 144.9, length 161
fill([13818.00,13834.10,13979.00,13834.10,13818.00,13818.00], ...
	[-25300.00,-25300.00,-25000.00,-24700.00,-24700.00,-25300.00], 'r-');
%% Text at position 13899,-24700:  
h = text(13899.0, -24700.0, '');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [14363,14782] to [-25000,-25000].  Width 300, indent 377.1, length 419
fill([14363.00,14404.90,14782.00,14404.90,14363.00,14363.00], ...
	[-25300.00,-25300.00,-25000.00,-24700.00,-24700.00,-25300.00], 'w-');
%% Text at position 14573,-24700:  NoHit8574
h = text(14573.0, -24700.0, 'NoHit8574');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [16055,15027] to [-25000,-25000].  Width 300, indent 400, length 1028
fill([16055.00,15427.00,15027.00,15427.00,16055.00,16055.00], ...
	[-24700.00,-24700.00,-25000.00,-25300.00,-25300.00,-24700.00], 'r-');
%% Text at position 15541,-24700:  YGL040C
h = text(15541.0, -24700.0, 'YGL040C');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% 
%% Plot x_dashed vs. y_dashed
%% 
%% 
%% Seting variable x_dashed.  2 values, [min,avg,max]=[46723..46723..46723]
x_dashed = [...
	46723,46723];
%% Seting variable y_dashed.  2 values, [min,avg,max]=[-17500..-11250..-5000]
y_dashed = [...
	-5000,-17500];
plot(x_dashed, y_dashed, 'k.:')
%% 
%% 
%% Plot x_dashed vs. y_dashed
%% 
%% 
%% Seting variable x_dashed.  2 values, [min,avg,max]=[46953..46953..46953]
x_dashed = [...
	46953,46953];
%% Seting variable y_dashed.  2 values, [min,avg,max]=[-17500..-11250..-5000]
y_dashed = [...
	-5000,-17500];
plot(x_dashed, y_dashed, 'k.:')
%% 
%% 
%% Plot x_dashed vs. y_dashed
%% 
%% 
%% Seting variable x_dashed.  2 values, [min,avg,max]=[36540..36540..36540]
x_dashed = [...
	36540,36540];
%% Seting variable y_dashed.  2 values, [min,avg,max]=[-15000..-10000..-5000]
y_dashed = [...
	-5000,-15000];
plot(x_dashed, y_dashed, 'k.:')
%% 
%% 
%% Plot x_dashed vs. y_dashed
%% 
%% 
%% Seting variable x_dashed.  2 values, [min,avg,max]=[36707..40177..43647]
x_dashed = [...
	43647,36707];
%% Seting variable y_dashed.  2 values, [min,avg,max]=[-15000..-10000..-5000]
y_dashed = [...
	-5000,-15000];
plot(x_dashed, y_dashed, 'k.:')
%% 
%% 
%% Plot x_dashed vs. y_dashed
%% 
%% 
%% Seting variable x_dashed.  3 values, [min,avg,max]=[13818..13818..13818]
x_dashed = [...
	13818,13818,13818];
%% Seting variable y_dashed.  3 values, [min,avg,max]=[-25000..-13334..-5000]
y_dashed = [...
	-5000,-10000,-25000];
plot(x_dashed, y_dashed, 'k.:')
%% 
%% 
%% Plot x_dashed vs. y_dashed
%% 
%% 
%% Seting variable x_dashed.  3 values, [min,avg,max]=[13979..18238..26701]
x_dashed = [...
	26701,14036,13979];
%% Seting variable y_dashed.  3 values, [min,avg,max]=[-25000..-13334..-5000]
y_dashed = [...
	-5000,-10000,-25000];
plot(x_dashed, y_dashed, 'k.:')
%% 
%% 
%% Plot x_dashed vs. y_dashed
%% 
%% 
%% Seting variable x_dashed.  2 values, [min,avg,max]=[48901..48901..48901]
x_dashed = [...
	48901,48901];
%% Seting variable y_dashed.  2 values, [min,avg,max]=[-20000..-12500..-5000]
y_dashed = [...
	-5000,-20000];
plot(x_dashed, y_dashed, 'k.:')
%% 
%% 
%% Plot x_dashed vs. y_dashed
%% 
%% 
%% Seting variable x_dashed.  2 values, [min,avg,max]=[49425..49761..50097]
x_dashed = [...
	50097,49425];
%% Seting variable y_dashed.  2 values, [min,avg,max]=[-20000..-12500..-5000]
y_dashed = [...
	-5000,-20000];
plot(x_dashed, y_dashed, 'k.:')
ax = axis;
axis([ax(1),ax(2),ax(3),0]);
h = gcf;
h2 = get(h,'CurrentAxes');
set(h2,'YAxisLocation','right');
title('Scer Chr17 tile 1 positions 0kbp to 50kbp aligned against Spar Smik Sbay');
