clear; clf; 
hold on;
%% Plotting the boundaries for Scer chr5
plot([545000,581869],[-5000,-5000],'k-');
plot([545000,545000],[-4500,-5500],'k-');
plot([581869,581869],[-4500,-5500],'k-');
%% Text at position 581869,-5300:  Scer chr5
h = text(581869.0, -5300.0, 'Scer chr5');
set(h,'VerticalAlignment','top')
set(h,'HorizontalAlignment','right')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
%% Hooks at the end of Scer chr5
plot([545000,545000,545000],[-5500,-5500,-5400],'k-');
plot([581869,581869,581869],[-4500,-4500,-4600],'k-');
%% 
%% Arrow from [541685,545050] to [-5000,-5000].  Width 300, indent 400, length 3365
fill([541685.00,544650.00,545050.00,544650.00,541685.00,541685.00], ...
	[-5300.00,-5300.00,-5000.00,-4700.00,-4700.00,-5300.00], 'r-');
%% Text at position 543367,-4700:  YER176W (ECM32)
h = text(543367.0, -4700.0, 'YER176W (ECM32)');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [545606,546409] to [-5000,-5000].  Width 300, indent 400, length 803
fill([545606.00,546009.00,546409.00,546009.00,545606.00,545606.00], ...
	[-5300.00,-5300.00,-5000.00,-4700.00,-4700.00,-5300.00], 'r-');
%% Text at position 546007,-4700:  YER177W (BMH1)
h = text(546007.0, -4700.0, 'YER177W (BMH1)');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [546743,548074] to [-5000,-5000].  Width 300, indent 400, length 1331
fill([546743.00,547674.00,548074.00,547674.00,546743.00,546743.00], ...
	[-5300.00,-5300.00,-5000.00,-4700.00,-4700.00,-5300.00], 'r-');
%% Text at position 547408,-4700:  YER178W (PDA1)
h = text(547408.0, -4700.0, 'YER178W (PDA1)');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [548416,549512] to [-5000,-5000].  Width 300, indent 400, length 1096
fill([548416.00,549112.00,549512.00,549112.00,548416.00,548416.00], ...
	[-5300.00,-5300.00,-5000.00,-4700.00,-4700.00,-5300.00], 'b-');
%% Text at position 548964,-4700:  YER179W (DMC1)
h = text(548964.0, -4700.0, 'YER179W (DMC1)');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [550522,549719] to [-5000,-5000].  Width 300, indent 400, length 803
fill([550522.00,550119.00,549719.00,550119.00,550522.00,550522.00], ...
	[-4700.00,-4700.00,-5000.00,-5300.00,-5300.00,-4700.00], 'r-');
%% Text at position 550120,-4700:  YER180C (ISC10)
h = text(550120.0, -4700.0, 'YER180C (ISC10)');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [551353,551280] to [-5000,-5000].  Width 300, indent 65.7, length 73
fill([551353.00,551345.70,551280.00,551345.70,551353.00,551353.00], ...
	[-4700.00,-4700.00,-5000.00,-5300.00,-5300.00,-4700.00], 'c-');
%% Text at position 551316,-4700:  tI(AAU)E2 (TI(AAU)E2)
h = text(551316.0, -4700.0, 'tI(AAU)E2 (TI(AAU)E2)');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [551437,551768] to [-5000,-5000].  Width 300, indent 297.9, length 331
fill([551437.00,551470.10,551768.00,551470.10,551437.00,551437.00], ...
	[-5300.00,-5300.00,-5000.00,-4700.00,-4700.00,-5300.00], 'm-');
%% Text at position 551602,-4700:  YERWDELTA25
h = text(551602.0, -4700.0, 'YERWDELTA25');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [551791,551468] to [-5000,-5000].  Width 300, indent 290.7, length 323
fill([551791.00,551758.70,551468.00,551758.70,551791.00,551791.00], ...
	[-4700.00,-4700.00,-5000.00,-5300.00,-5300.00,-4700.00], 'b-');
%% Text at position 551629,-4700:  YER181C
h = text(551629.0, -4700.0, 'YER181C');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [552262,552035] to [-5000,-5000].  Width 300, indent 204.3, length 227
fill([552262.00,552239.30,552035.00,552239.30,552262.00,552262.00], ...
	[-4700.00,-4700.00,-5000.00,-5300.00,-5300.00,-4700.00], 'm-');
%% Text at position 552148,-4700:  YERCDELTA26
h = text(552148.0, -4700.0, 'YERCDELTA26');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [552520,553254] to [-5000,-5000].  Width 300, indent 400, length 734
fill([552520.00,552854.00,553254.00,552854.00,552520.00,552520.00], ...
	[-5300.00,-5300.00,-5000.00,-4700.00,-4700.00,-5300.00], 'r-');
%% Text at position 552887,-4700:  YER182W
h = text(552887.0, -4700.0, 'YER182W');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [553964,553329] to [-5000,-5000].  Width 300, indent 400, length 635
fill([553964.00,553729.00,553329.00,553729.00,553964.00,553964.00], ...
	[-4700.00,-4700.00,-5000.00,-5300.00,-5300.00,-4700.00], 'r-');
%% Text at position 553646,-4700:  YER183C
h = text(553646.0, -4700.0, 'YER183C');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [558675,556291] to [-5000,-5000].  Width 300, indent 400, length 2384
fill([558675.00,556691.00,556291.00,556691.00,558675.00,558675.00], ...
	[-4700.00,-4700.00,-5000.00,-5300.00,-5300.00,-4700.00], 'b-');
%% Text at position 557483,-4700:  YER184C
h = text(557483.0, -4700.0, 'YER184C');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [559449,560360] to [-5000,-5000].  Width 300, indent 400, length 911
fill([559449.00,559960.00,560360.00,559960.00,559449.00,559449.00], ...
	[-5300.00,-5300.00,-5000.00,-4700.00,-4700.00,-5300.00], 'b-');
%% Text at position 559904,-4700:  YER185W
h = text(559904.0, -4700.0, 'YER185W');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [562620,561700] to [-5000,-5000].  Width 300, indent 400, length 920
fill([562620.00,562100.00,561700.00,562100.00,562620.00,562620.00], ...
	[-4700.00,-4700.00,-5000.00,-5300.00,-5300.00,-4700.00], 'b-');
%% Text at position 562160,-4700:  YER186C
h = text(562160.0, -4700.0, 'YER186C');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [564019,563923] to [-5000,-5000].  Width 300, indent 86.4, length 96
fill([564019.00,564009.40,563923.00,564009.40,564019.00,564019.00], ...
	[-4700.00,-4700.00,-5000.00,-5300.00,-5300.00,-4700.00], 'm-');
%% Text at position 563971,-4700:  YERCOMEGA1
h = text(563971.0, -4700.0, 'YERCOMEGA1');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [565667,566260] to [-5000,-5000].  Width 300, indent 400, length 593
fill([565667.00,565860.00,566260.00,565860.00,565667.00,565667.00], ...
	[-5300.00,-5300.00,-5000.00,-4700.00,-4700.00,-5300.00], 'r-');
%% Text at position 565963,-4700:  YER187W-A (KHS1)
h = text(565963.0, -4700.0, 'YER187W-A (KHS1)');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [566225,566650] to [-5000,-5000].  Width 300, indent 382.5, length 425
fill([566225.00,566267.50,566650.00,566267.50,566225.00,566225.00], ...
	[-5300.00,-5300.00,-5000.00,-4700.00,-4700.00,-5300.00], 'b-');
%% Text at position 566437,-4700:  YER187W
h = text(566437.0, -4700.0, 'YER187W');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [568035,568754] to [-5000,-5000].  Width 300, indent 400, length 719
fill([568035.00,568354.00,568754.00,568354.00,568035.00,568035.00], ...
	[-5300.00,-5300.00,-5000.00,-4700.00,-4700.00,-5300.00], 'r-');
%% Text at position 568394,-4700:  YER188W
h = text(568394.0, -4700.0, 'YER188W');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [568786,569019] to [-5000,-5000].  Width 300, indent 209.7, length 233
fill([568786.00,568809.30,569019.00,568809.30,568786.00,568786.00], ...
	[-5300.00,-5300.00,-5000.00,-4700.00,-4700.00,-5300.00], 'm-');
%% Text at position 568902,-4700:  YERWOMEGA2
h = text(568902.0, -4700.0, 'YERWOMEGA2');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [571150,571518] to [-5000,-5000].  Width 300, indent 331.2, length 368
fill([571150.00,571186.80,571518.00,571186.80,571150.00,571150.00], ...
	[-5300.00,-5300.00,-5000.00,-4700.00,-4700.00,-5300.00], 'b-');
%% Text at position 571334,-4700:  YER189W
h = text(571334.0, -4700.0, 'YER189W');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [571475,576520] to [-5000,-5000].  Width 300, indent 400, length 5045
fill([571475.00,576120.00,576520.00,576120.00,571475.00,571475.00], ...
	[-5300.00,-5300.00,-5000.00,-4700.00,-4700.00,-5300.00], 'b-');
%% Text at position 573997,-4700:  YER190W (YRF1-2)
h = text(573997.0, -4700.0, 'YER190W (YRF1-2)');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% Plotting the boundaries for Spar contig284
plot([530000,571419.5],[-10000,-10000],'k-');
plot([530000,530000],[-9500,-10500],'k-');
plot([571419.5,571419.5],[-9500,-10500],'k-');
%% Text at position 571419.5,-10300:  Spar contig284
h = text(571419.5, -10300.0, 'Spar contig284');
set(h,'VerticalAlignment','top')
set(h,'HorizontalAlignment','right')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
%% Hooks at the end of Spar contig284
plot([530000,530000,530000],[-10500,-10500,-10400],'k-');
plot([571419.5,571419.5,571419.5],[-9500,-9500,-9600],'k-');
%% 
%% Arrow from [536106.5,538079.5] to [-10000,-10000].  Width 300, indent 400, length 1973
fill([536106.50,537679.50,538079.50,537679.50,536106.50,536106.50], ...
	[-10300.00,-10300.00,-10000.00,-9700.00,-9700.00,-10300.00], 'r-');
%% Text at position 537092.5,-9700:  YER173W
h = text(537092.5, -9700.0, 'YER173W');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [538975.5,538241.5] to [-10000,-10000].  Width 300, indent 400, length 734
fill([538975.50,538641.50,538241.50,538641.50,538975.50,538975.50], ...
	[-9700.00,-9700.00,-10000.00,-10300.00,-10300.00,-9700.00], 'r-');
%% Text at position 538608.5,-9700:  YER174C
h = text(538608.5, -9700.0, 'YER174C');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [540171.5,539272.5] to [-10000,-10000].  Width 300, indent 400, length 899
fill([540171.50,539672.50,539272.50,539672.50,540171.50,540171.50], ...
	[-9700.00,-9700.00,-10000.00,-10300.00,-10300.00,-9700.00], 'r-');
%% Text at position 539721.5,-9700:  YER175C
h = text(539721.5, -9700.0, 'YER175C');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [541517.5,544885.5] to [-10000,-10000].  Width 300, indent 400, length 3368
fill([541517.50,544485.50,544885.50,544485.50,541517.50,541517.50], ...
	[-10300.00,-10300.00,-10000.00,-9700.00,-9700.00,-10300.00], 'r-');
%% Text at position 543201.5,-9700:  
h = text(543201.5, -9700.0, '');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [545339.5,544938.5] to [-10000,-10000].  Width 300, indent 360.9, length 401
fill([545339.50,545299.40,544938.50,545299.40,545339.50,545339.50], ...
	[-9700.00,-9700.00,-10000.00,-10300.00,-10300.00,-9700.00], 'w-');
%% Text at position 545138.5,-9700:  NoHit6703
h = text(545138.5, -9700.0, 'NoHit6703');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [545447.5,546247.5] to [-10000,-10000].  Width 300, indent 400, length 800
fill([545447.50,545847.50,546247.50,545847.50,545447.50,545447.50], ...
	[-10300.00,-10300.00,-10000.00,-9700.00,-9700.00,-10300.00], 'r-');
%% Text at position 545847.5,-9700:  
h = text(545847.5, -9700.0, '');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [546649.5,547911.5] to [-10000,-10000].  Width 300, indent 400, length 1262
fill([546649.50,547511.50,547911.50,547511.50,546649.50,546649.50], ...
	[-10300.00,-10300.00,-10000.00,-9700.00,-9700.00,-10300.00], 'r-');
%% Text at position 547280.5,-9700:  
h = text(547280.5, -9700.0, '');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [548292.5,548447.5] to [-10000,-10000].  Width 300, indent 139.5, length 155
fill([548292.50,548308.00,548447.50,548308.00,548292.50,548292.50], ...
	[-10300.00,-10300.00,-10000.00,-9700.00,-9700.00,-10300.00], 'b-');
%% Text at position 548369.5,-9700:  YER179W
h = text(548369.5, -9700.0, 'YER179W');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [548648.5,548484.5] to [-10000,-10000].  Width 300, indent 147.6, length 164
fill([548648.50,548632.10,548484.50,548632.10,548648.50,548648.50], ...
	[-9700.00,-9700.00,-10000.00,-10300.00,-10300.00,-9700.00], 'w-');
%% Text at position 548566.5,-9700:  NoHit6712
h = text(548566.5, -9700.0, 'NoHit6712');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [548716.5,549387.5] to [-10000,-10000].  Width 300, indent 400, length 671
fill([548716.50,548987.50,549387.50,548987.50,548716.50,548716.50], ...
	[-10300.00,-10300.00,-10000.00,-9700.00,-9700.00,-10300.00], 'b-');
%% Text at position 549051.5,-9700:  YER179W
h = text(549051.5, -9700.0, 'YER179W');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [550379.5,549576.5] to [-10000,-10000].  Width 300, indent 400, length 803
fill([550379.50,549976.50,549576.50,549976.50,550379.50,550379.50], ...
	[-9700.00,-9700.00,-10000.00,-10300.00,-10300.00,-9700.00], 'r-');
%% Text at position 549977.5,-9700:  
h = text(549977.5, -9700.0, '');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [550979.5,550722.5] to [-10000,-10000].  Width 300, indent 231.3, length 257
fill([550979.50,550953.80,550722.50,550953.80,550979.50,550979.50], ...
	[-9700.00,-9700.00,-10000.00,-10300.00,-10300.00,-9700.00], 'w-');
%% Text at position 550850.5,-9700:  NoHit6716
h = text(550850.5, -9700.0, 'NoHit6716');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [551116.5,551277.5] to [-10000,-10000].  Width 300, indent 144.9, length 161
fill([551116.50,551132.60,551277.50,551132.60,551116.50,551116.50], ...
	[-10300.00,-10300.00,-10000.00,-9700.00,-9700.00,-10300.00], 'y-');
%% Text at position 551196.5,-9700:  ParYNL017C
h = text(551196.5, -9700.0, 'ParYNL017C');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [552629.5,553342.5] to [-10000,-10000].  Width 300, indent 400, length 713
fill([552629.50,552942.50,553342.50,552942.50,552629.50,552629.50], ...
	[-10300.00,-10300.00,-10000.00,-9700.00,-9700.00,-10300.00], 'r-');
%% Text at position 552985.5,-9700:  
h = text(552985.5, -9700.0, '');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [554057.5,553422.5] to [-10000,-10000].  Width 300, indent 400, length 635
fill([554057.50,553822.50,553422.50,553822.50,554057.50,554057.50], ...
	[-9700.00,-9700.00,-10000.00,-10300.00,-10300.00,-9700.00], 'r-');
%% Text at position 553739.5,-9700:  
h = text(553739.5, -9700.0, '');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [559031.5,556668.5] to [-10000,-10000].  Width 300, indent 400, length 2363
fill([559031.50,557068.50,556668.50,557068.50,559031.50,559031.50], ...
	[-9700.00,-9700.00,-10000.00,-10300.00,-10300.00,-9700.00], 'r-');
%% Text at position 557849.5,-9700:  
h = text(557849.5, -9700.0, '');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [559840.5,560751.5] to [-10000,-10000].  Width 300, indent 400, length 911
fill([559840.50,560351.50,560751.50,560351.50,559840.50,559840.50], ...
	[-10300.00,-10300.00,-10000.00,-9700.00,-9700.00,-10300.00], 'r-');
%% Text at position 560295.5,-9700:  
h = text(560295.5, -9700.0, '');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [562452.5,562201.5] to [-10000,-10000].  Width 300, indent 225.9, length 251
fill([562452.50,562427.40,562201.50,562427.40,562452.50,562452.50], ...
	[-9700.00,-9700.00,-10000.00,-10300.00,-10300.00,-9700.00], 'b-');
%% Text at position 562326.5,-9700:  YER186C
h = text(562326.5, -9700.0, 'YER186C');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [563018.5,562839.5] to [-10000,-10000].  Width 300, indent 161.1, length 179
fill([563018.50,563000.60,562839.50,563000.60,563018.50,563018.50], ...
	[-9700.00,-9700.00,-10000.00,-10300.00,-10300.00,-9700.00], 'b-');
%% Text at position 562928.5,-9700:  YER186C
h = text(562928.5, -9700.0, 'YER186C');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [564774.5,565112.5] to [-10000,-10000].  Width 300, indent 304.2, length 338
fill([564774.50,564808.30,565112.50,564808.30,564774.50,564774.50], ...
	[-10300.00,-10300.00,-10000.00,-9700.00,-9700.00,-10300.00], 'w-');
%% Text at position 564943.5,-9700:  NoHit6738
h = text(564943.5, -9700.0, 'NoHit6738');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [565829.5,567052.5] to [-10000,-10000].  Width 300, indent 400, length 1223
fill([565829.50,566652.50,567052.50,566652.50,565829.50,565829.50], ...
	[-10300.00,-10300.00,-10000.00,-9700.00,-9700.00,-10300.00], 'b-');
%% Text at position 566440.5,-9700:  YER187W-A
h = text(566440.5, -9700.0, 'YER187W-A');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [568181.5,568651.5] to [-10000,-10000].  Width 300, indent 400, length 470
fill([568181.50,568251.50,568651.50,568251.50,568181.50,568181.50], ...
	[-10300.00,-10300.00,-10000.00,-9700.00,-9700.00,-10300.00], 'r-');
%% Text at position 568416.5,-9700:  
h = text(568416.5, -9700.0, '');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [568854.5,569243.5] to [-10000,-10000].  Width 300, indent 350.1, length 389
fill([568854.50,568893.40,569243.50,568893.40,568854.50,568854.50], ...
	[-10300.00,-10300.00,-10000.00,-9700.00,-9700.00,-10300.00], 'r-');
%% Text at position 569048.5,-9700:  
h = text(569048.5, -9700.0, '');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [569361.5,569525.5] to [-10000,-10000].  Width 300, indent 147.6, length 164
fill([569361.50,569377.90,569525.50,569377.90,569361.50,569361.50], ...
	[-10300.00,-10300.00,-10000.00,-9700.00,-9700.00,-10300.00], 'b-');
%% Text at position 569443.5,-9700:  YER190W
h = text(569443.5, -9700.0, 'YER190W');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [569479.5,571110.5] to [-10000,-10000].  Width 300, indent 400, length 1631
fill([569479.50,570710.50,571110.50,570710.50,569479.50,569479.50], ...
	[-10300.00,-10300.00,-10000.00,-9700.00,-9700.00,-10300.00], 'b-');
%% Text at position 570294.5,-9700:  YER190W
h = text(570294.5, -9700.0, 'YER190W');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [569747.5,569505.5] to [-10000,-10000].  Width 300, indent 217.8, length 242
fill([569747.50,569723.30,569505.50,569723.30,569747.50,569747.50], ...
	[-9700.00,-9700.00,-10000.00,-10300.00,-10300.00,-9700.00], 'b-');
%% Text at position 569626.5,-9700:  YLR463C
h = text(569626.5, -9700.0, 'YLR463C');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [570363.5,570013.5] to [-10000,-10000].  Width 300, indent 315.0, length 350
fill([570363.50,570328.50,570013.50,570328.50,570363.50,570363.50], ...
	[-9700.00,-9700.00,-10000.00,-10300.00,-10300.00,-9700.00], 'r-');
%% Text at position 570188.5,-9700:  YLR465C
h = text(570188.5, -9700.0, 'YLR465C');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [571258.5,571416.5] to [-10000,-10000].  Width 300, indent 142.2, length 158
fill([571258.50,571274.30,571416.50,571274.30,571258.50,571258.50], ...
	[-10300.00,-10300.00,-10000.00,-9700.00,-9700.00,-10300.00], 'b-');
%% Text at position 571337.5,-9700:  YER190W
h = text(571337.5, -9700.0, 'YER190W');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [551189.5,552509.5] to [-10000,-10000].  Width 300, indent 400, length 1320
fill([551189.50,552109.50,552509.50,552109.50,551189.50,551189.50], ...
	[-10300.00,-10300.00,-10000.00,-9700.00,-9700.00,-10300.00], 'm-');
%% Text at position 551849.5,-9700:  TyElmt_8 hits at 63%
h = text(551849.5, -9700.0, 'TyElmt_8 hits at 63%');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% Plotting the boundaries for Smik contig2
plot([530000,551535.5],[-15000,-15000],'k-');
plot([530000,530000],[-14500,-15500],'k-');
plot([551535.5,551535.5],[-14500,-15500],'k-');
%% Text at position 551535.5,-15300:  Smik contig2
h = text(551535.5, -15300.0, 'Smik contig2');
set(h,'VerticalAlignment','top')
set(h,'HorizontalAlignment','right')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
%% Hooks at the end of Smik contig2
plot([530000,529814,529814],[-15500,-15500,-15400],'k-');
plot([551535.5,551554.5,551554.5],[-14500,-14500,-14600],'k-');
%% 
%% Arrow from [536121.5,538184.5] to [-15000,-15000].  Width 300, indent 400, length 2063
fill([536121.50,537784.50,538184.50,537784.50,536121.50,536121.50], ...
	[-15300.00,-15300.00,-15000.00,-14700.00,-14700.00,-15300.00], 'r-');
%% Text at position 537153.5,-14700:  
h = text(537153.5, -14700.0, '');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [539070.5,538336.5] to [-15000,-15000].  Width 300, indent 400, length 734
fill([539070.50,538736.50,538336.50,538736.50,539070.50,539070.50], ...
	[-14700.00,-14700.00,-15000.00,-15300.00,-15300.00,-14700.00], 'r-');
%% Text at position 538703.5,-14700:  
h = text(538703.5, -14700.0, '');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [540274.5,539375.5] to [-15000,-15000].  Width 300, indent 400, length 899
fill([540274.50,539775.50,539375.50,539775.50,540274.50,540274.50], ...
	[-14700.00,-14700.00,-15000.00,-15300.00,-15300.00,-14700.00], 'r-');
%% Text at position 539825.5,-14700:  
h = text(539825.5, -14700.0, '');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [541613.5,544987.5] to [-15000,-15000].  Width 300, indent 400, length 3374
fill([541613.50,544587.50,544987.50,544587.50,541613.50,541613.50], ...
	[-15300.00,-15300.00,-15000.00,-14700.00,-14700.00,-15300.00], 'r-');
%% Text at position 543300.5,-14700:  
h = text(543300.5, -14700.0, '');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [545557.5,546384.5] to [-15000,-15000].  Width 300, indent 400, length 827
fill([545557.50,545984.50,546384.50,545984.50,545557.50,545557.50], ...
	[-15300.00,-15300.00,-15000.00,-14700.00,-14700.00,-15300.00], 'r-');
%% Text at position 545971.5,-14700:  
h = text(545971.5, -14700.0, '');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [546786.5,548048.5] to [-15000,-15000].  Width 300, indent 400, length 1262
fill([546786.50,547648.50,548048.50,547648.50,546786.50,546786.50], ...
	[-15300.00,-15300.00,-15000.00,-14700.00,-14700.00,-15300.00], 'r-');
%% Text at position 547417.5,-14700:  
h = text(547417.5, -14700.0, '');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [548414.5,548683.5] to [-15000,-15000].  Width 300, indent 242.1, length 269
fill([548414.50,548441.40,548683.50,548441.40,548414.50,548414.50], ...
	[-15300.00,-15300.00,-15000.00,-14700.00,-14700.00,-15300.00], 'b-');
%% Text at position 548549.5,-14700:  YER179W
h = text(548549.5, -14700.0, 'YER179W');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [548850.5,549521.5] to [-15000,-15000].  Width 300, indent 400, length 671
fill([548850.50,549121.50,549521.50,549121.50,548850.50,548850.50], ...
	[-15300.00,-15300.00,-15000.00,-14700.00,-14700.00,-15300.00], 'b-');
%% Text at position 549186.5,-14700:  YER179W
h = text(549186.5, -14700.0, 'YER179W');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [550523.5,549720.5] to [-15000,-15000].  Width 300, indent 400, length 803
fill([550523.50,550120.50,549720.50,550120.50,550523.50,550523.50], ...
	[-14700.00,-14700.00,-15000.00,-15300.00,-15300.00,-14700.00], 'r-');
%% Text at position 550122.5,-14700:  
h = text(550122.5, -14700.0, '');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [551101.5,551265.5] to [-15000,-15000].  Width 300, indent 147.6, length 164
fill([551101.50,551117.90,551265.50,551117.90,551101.50,551101.50], ...
	[-15300.00,-15300.00,-15000.00,-14700.00,-14700.00,-15300.00], 'w-');
%% Text at position 551183.5,-14700:  NoHit5885
h = text(551183.5, -14700.0, 'NoHit5885');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% Plotting the boundaries for Smik contig386
plot([539705,558622],[-17500,-17500],'k-');
plot([539705,539705],[-17000,-18000],'k-');
plot([558622,558622],[-17000,-18000],'k-');
%% Text at position 558622,-17800:  Smik contig386
h = text(558622.0, -17800.0, 'Smik contig386');
set(h,'VerticalAlignment','top')
set(h,'HorizontalAlignment','right')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
%% Hooks at the end of Smik contig386
plot([539705,538107,538107],[-18000,-18000,-17900],'k-');
plot([558622,558684,558684],[-17000,-17000,-17100],'k-');
%% 
%% Arrow from [551931,550589] to [-17500,-17500].  Width 300, indent 400, length 1342
fill([551931.00,550989.00,550589.00,550989.00,551931.00,551931.00], ...
	[-17200.00,-17200.00,-17500.00,-17800.00,-17800.00,-17200.00], 'm-');
%% Text at position 551260,-17200:  TyElmt_303 hits at 64%
h = text(551260.0, -17200.0, 'TyElmt_303 hits at 64%');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [552243,552092] to [-17500,-17500].  Width 300, indent 135.9, length 151
fill([552243.00,552227.90,552092.00,552227.90,552243.00,552243.00], ...
	[-17200.00,-17200.00,-17500.00,-17800.00,-17800.00,-17200.00], 'm-');
%% Text at position 552168,-17200:  TyElmt_11 hits at 59%
h = text(552168.0, -17200.0, 'TyElmt_11 hits at 59%');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [542771,543595] to [-17500,-17500].  Width 300, indent 400, length 824
fill([542771.00,543195.00,543595.00,543195.00,542771.00,542771.00], ...
	[-17800.00,-17800.00,-17500.00,-17200.00,-17200.00,-17800.00], 'r-');
%% Text at position 543183,-17200:  YDR272W
h = text(543183.0, -17200.0, 'YDR272W');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [543943,545007] to [-17500,-17500].  Width 300, indent 400, length 1064
fill([543943.00,544607.00,545007.00,544607.00,543943.00,543943.00], ...
	[-17800.00,-17800.00,-17500.00,-17200.00,-17200.00,-17800.00], 'r-');
%% Text at position 544475,-17200:  YDR273W
h = text(544475.0, -17200.0, 'YDR273W');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [545459,545241] to [-17500,-17500].  Width 300, indent 196.2, length 218
fill([545459.00,545437.20,545241.00,545437.20,545459.00,545459.00], ...
	[-17200.00,-17200.00,-17500.00,-17800.00,-17800.00,-17200.00], 'w-');
%% Text at position 545350,-17200:  NoHit4471
h = text(545350.0, -17200.0, 'NoHit4471');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [546060,546776] to [-17500,-17500].  Width 300, indent 400, length 716
fill([546060.00,546376.00,546776.00,546376.00,546060.00,546060.00], ...
	[-17800.00,-17800.00,-17500.00,-17200.00,-17200.00,-17800.00], 'r-');
%% Text at position 546418,-17200:  YDR275W
h = text(546418.0, -17200.0, 'YDR275W');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [547447,547280] to [-17500,-17500].  Width 300, indent 150.3, length 167
fill([547447.00,547430.30,547280.00,547430.30,547447.00,547447.00], ...
	[-17200.00,-17200.00,-17500.00,-17800.00,-17800.00,-17200.00], 'r-');
%% Text at position 547364,-17200:  YDR276C
h = text(547364.0, -17200.0, 'YDR276C');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [549577,548279] to [-17500,-17500].  Width 300, indent 400, length 1298
fill([549577.00,548679.00,548279.00,548679.00,549577.00,549577.00], ...
	[-17200.00,-17200.00,-17500.00,-17800.00,-17800.00,-17200.00], 'r-');
%% Text at position 548928,-17200:  YDR277C
h = text(548928.0, -17200.0, 'YDR277C');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [551830,551468] to [-17500,-17500].  Width 300, indent 325.8, length 362
fill([551830.00,551793.80,551468.00,551793.80,551830.00,551830.00], ...
	[-17200.00,-17200.00,-17500.00,-17800.00,-17800.00,-17200.00], 'r-');
%% Text at position 551649,-17200:  
h = text(551649.0, -17200.0, '');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [552072,551830] to [-17500,-17500].  Width 300, indent 217.8, length 242
fill([552072.00,552047.80,551830.00,552047.80,552072.00,552072.00], ...
	[-17200.00,-17200.00,-17500.00,-17800.00,-17800.00,-17200.00], 'w-');
%% Text at position 551951,-17200:  NoHit4457
h = text(551951.0, -17200.0, 'NoHit4457');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [552091,553143] to [-17500,-17500].  Width 300, indent 400, length 1052
fill([552091.00,552743.00,553143.00,552743.00,552091.00,552091.00], ...
	[-17800.00,-17800.00,-17500.00,-17200.00,-17200.00,-17800.00], 'r-');
%% Text at position 552617,-17200:  YDR279W
h = text(552617.0, -17200.0, 'YDR279W');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [553434,554351] to [-17500,-17500].  Width 300, indent 400, length 917
fill([553434.00,553951.00,554351.00,553951.00,553434.00,553434.00], ...
	[-17800.00,-17800.00,-17500.00,-17200.00,-17200.00,-17800.00], 'r-');
%% Text at position 553893,-17200:  YDR280W
h = text(553893.0, -17200.0, 'YDR280W');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [554975,554700] to [-17500,-17500].  Width 300, indent 247.5, length 275
fill([554975.00,554947.50,554700.00,554947.50,554975.00,554975.00], ...
	[-17200.00,-17200.00,-17500.00,-17800.00,-17800.00,-17200.00], 'r-');
%% Text at position 554838,-17200:  YDR281C
h = text(554838.0, -17200.0, 'YDR281C');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [557050,555806] to [-17500,-17500].  Width 300, indent 400, length 1244
fill([557050.00,556206.00,555806.00,556206.00,557050.00,557050.00], ...
	[-17200.00,-17200.00,-17500.00,-17800.00,-17800.00,-17200.00], 'r-');
%% Text at position 556428,-17200:  YDR282C
h = text(556428.0, -17200.0, 'YDR282C');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [558559,557345] to [-17500,-17500].  Width 300, indent 400, length 1214
fill([558559.00,557745.00,557345.00,557745.00,558559.00,558559.00], ...
	[-17200.00,-17200.00,-17500.00,-17800.00,-17800.00,-17200.00], 'b-');
%% Text at position 557952,-17200:  YDR283C
h = text(557952.0, -17200.0, 'YDR283C');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% Plotting the boundaries for Smik contig1
plot([550766.0,563130.0],[-20000,-20000],'k-');
plot([550766.0,550766.0],[-19500,-20500],'k-');
plot([563130.0,563130.0],[-19500,-20500],'k-');
%% Text at position 563130.0,-20300:  Smik contig1
h = text(563130.0, -20300.0, 'Smik contig1');
set(h,'VerticalAlignment','top')
set(h,'HorizontalAlignment','right')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
%% Hooks at the end of Smik contig1
plot([550766.0,550747.0,550747.0],[-20500,-20500,-20400],'k-');
plot([563130.0,563867.0,563867.0],[-19500,-19500,-19600],'k-');
%% 
%% Arrow from [552290.0,550766.0] to [-20000,-20000].  Width 300, indent 400, length 1524
fill([552290.00,551166.00,550766.00,551166.00,552290.00,552290.00], ...
	[-19700.00,-19700.00,-20000.00,-20300.00,-20300.00,-19700.00], 'm-');
%% Text at position 551528.0,-19700:  TyElmt_385 hits at 62%
h = text(551528.0, -19700.0, 'TyElmt_385 hits at 62%');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [558162.0,557932.0] to [-20000,-20000].  Width 300, indent 207.0, length 230
fill([558162.00,558139.00,557932.00,558139.00,558162.00,558162.00], ...
	[-19700.00,-19700.00,-20000.00,-20300.00,-20300.00,-19700.00], 'm-');
%% Text at position 558047.0,-19700:  TyElmt_4 hits at 57%
h = text(558047.0, -19700.0, 'TyElmt_4 hits at 57%');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [559812.0,558742.0] to [-20000,-20000].  Width 300, indent 400, length 1070
fill([559812.00,559142.00,558742.00,559142.00,559812.00,559812.00], ...
	[-19700.00,-19700.00,-20000.00,-20300.00,-20300.00,-19700.00], 'm-');
%% Text at position 559277.0,-19700:  TyElmt_301 hits at 67%
h = text(559277.0, -19700.0, 'TyElmt_301 hits at 67%');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [552528.0,553238.0] to [-20000,-20000].  Width 300, indent 400, length 710
fill([552528.00,552838.00,553238.00,552838.00,552528.00,552528.00], ...
	[-20300.00,-20300.00,-20000.00,-19700.00,-19700.00,-20300.00], 'r-');
%% Text at position 552883.0,-19700:  
h = text(552883.0, -19700.0, '');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [553956.0,553321.0] to [-20000,-20000].  Width 300, indent 400, length 635
fill([553956.00,553721.00,553321.00,553721.00,553956.00,553956.00], ...
	[-19700.00,-19700.00,-20000.00,-20300.00,-20300.00,-19700.00], 'r-');
%% Text at position 553639.0,-19700:  
h = text(553639.0, -19700.0, '');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [558144.0,558452.0] to [-20000,-20000].  Width 300, indent 277.2, length 308
fill([558144.00,558174.80,558452.00,558174.80,558144.00,558144.00], ...
	[-20300.00,-20300.00,-20000.00,-19700.00,-19700.00,-20300.00], 'g-');
%% Text at position 558298.0,-19700:  YMR325W
h = text(558298.0, -19700.0, 'YMR325W');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [560448.0,560131.0] to [-20000,-20000].  Width 300, indent 285.3, length 317
fill([560448.00,560416.30,560131.00,560416.30,560448.00,560448.00], ...
	[-19700.00,-19700.00,-20000.00,-20300.00,-20300.00,-19700.00], 'w-');
%% Text at position 560290.0,-19700:  NoHit5877
h = text(560290.0, -19700.0, 'NoHit5877');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [561411.0,561740.0] to [-20000,-20000].  Width 300, indent 296.1, length 329
fill([561411.00,561443.90,561740.00,561443.90,561411.00,561411.00], ...
	[-20300.00,-20300.00,-20000.00,-19700.00,-19700.00,-20300.00], 'w-');
%% Text at position 561576.0,-19700:  NoHit5875
h = text(561576.0, -19700.0, 'NoHit5875');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [561914.0,563128.0] to [-20000,-20000].  Width 300, indent 400, length 1214
fill([561914.00,562728.00,563128.00,562728.00,561914.00,561914.00], ...
	[-20300.00,-20300.00,-20000.00,-19700.00,-19700.00,-20300.00], 'b-');
%% Text at position 562521.0,-19700:  YAR062W
h = text(562521.0, -19700.0, 'YAR062W');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% Plotting the boundaries for Smik contig787
plot([559365.5,568438.5],[-22500,-22500],'k-');
plot([559365.5,559365.5],[-22000,-23000],'k-');
plot([568438.5,568438.5],[-22000,-23000],'k-');
%% Text at position 568438.5,-22800:  Smik contig787
h = text(568438.5, -22800.0, 'Smik contig787');
set(h,'VerticalAlignment','top')
set(h,'HorizontalAlignment','right')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
%% Hooks at the end of Smik contig787
plot([559365.5,558738.5,558738.5],[-23000,-23000,-22900],'k-');
plot([568438.5,568438.5,568438.5],[-22000,-22000,-22100],'k-');
%% 
%% Arrow from [564611.5,563647.5] to [-22500,-22500].  Width 300, indent 400, length 964
fill([564611.50,564047.50,563647.50,564047.50,564611.50,564611.50], ...
	[-22200.00,-22200.00,-22500.00,-22800.00,-22800.00,-22200.00], 'm-');
%% Text at position 564129.5,-22200:  TyElmt_319 hits at 73%
h = text(564129.5, -22200.0, 'TyElmt_319 hits at 73%');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [567633.5,567109.5] to [-22500,-22500].  Width 300, indent 400, length 524
fill([567633.50,567509.50,567109.50,567509.50,567633.50,567633.50], ...
	[-22200.00,-22200.00,-22500.00,-22800.00,-22800.00,-22200.00], 'm-');
%% Text at position 567371.5,-22200:  TyElmt_29 hits at 61%
h = text(567371.5, -22200.0, 'TyElmt_29 hits at 61%');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [568202.5,567750.5] to [-22500,-22500].  Width 300, indent 400, length 452
fill([568202.50,568150.50,567750.50,568150.50,568202.50,568202.50], ...
	[-22200.00,-22200.00,-22500.00,-22800.00,-22800.00,-22200.00], 'm-');
%% Text at position 567976.5,-22200:  TyElmt_11 hits at 64%
h = text(567976.5, -22200.0, 'TyElmt_11 hits at 64%');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [560622.5,560299.5] to [-22500,-22500].  Width 300, indent 290.7, length 323
fill([560622.50,560590.20,560299.50,560590.20,560622.50,560622.50], ...
	[-22200.00,-22200.00,-22500.00,-22800.00,-22800.00,-22200.00], 'g-');
%% Text at position 560461.5,-22200:  YBR300C
h = text(560461.5, -22200.0, 'YBR300C');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [560872.5,560657.5] to [-22500,-22500].  Width 300, indent 193.5, length 215
fill([560872.50,560851.00,560657.50,560851.00,560872.50,560872.50], ...
	[-22200.00,-22200.00,-22500.00,-22800.00,-22800.00,-22200.00], 'g-');
%% Text at position 560765.5,-22200:  YGR293C
h = text(560765.5, -22200.0, 'YGR293C');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [560832.5,561194.5] to [-22500,-22500].  Width 300, indent 325.8, length 362
fill([560832.50,560868.70,561194.50,560868.70,560832.50,560832.50], ...
	[-22800.00,-22800.00,-22500.00,-22200.00,-22200.00,-22800.00], 'g-');
%% Text at position 561013.5,-22200:  YGR294W
h = text(561013.5, -22200.0, 'YGR294W');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [562287.5,561970.5] to [-22500,-22500].  Width 300, indent 285.3, length 317
fill([562287.50,562255.80,561970.50,562255.80,562287.50,562287.50], ...
	[-22200.00,-22200.00,-22500.00,-22800.00,-22800.00,-22200.00], 'g-');
%% Text at position 562129.5,-22200:  YGL263W
h = text(562129.5, -22200.0, 'YGL263W');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [563158.5,562646.5] to [-22500,-22500].  Width 300, indent 400, length 512
fill([563158.50,563046.50,562646.50,563046.50,563158.50,563158.50], ...
	[-22200.00,-22200.00,-22500.00,-22800.00,-22800.00,-22200.00], 'g-');
%% Text at position 562902.5,-22200:  YGL263W
h = text(562902.5, -22200.0, 'YGL263W');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [563438.5,563241.5] to [-22500,-22500].  Width 300, indent 177.3, length 197
fill([563438.50,563418.80,563241.50,563418.80,563438.50,563438.50], ...
	[-22200.00,-22200.00,-22500.00,-22800.00,-22800.00,-22200.00], 'w-');
%% Text at position 563340.5,-22200:  NoHit8677
h = text(563340.5, -22200.0, 'NoHit8677');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [564131.5,564412.5] to [-22500,-22500].  Width 300, indent 252.9, length 281
fill([564131.50,564159.60,564412.50,564159.60,564131.50,564131.50], ...
	[-22800.00,-22800.00,-22500.00,-22200.00,-22200.00,-22800.00], 'g-');
%% Text at position 564272.5,-22200:  YER138W-A
h = text(564272.5, -22200.0, 'YER138W-A');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [565535.5,565278.5] to [-22500,-22500].  Width 300, indent 231.3, length 257
fill([565535.50,565509.80,565278.50,565509.80,565535.50,565535.50], ...
	[-22200.00,-22200.00,-22500.00,-22800.00,-22800.00,-22200.00], 'w-');
%% Text at position 565407.5,-22200:  NoHit8672
h = text(565407.5, -22200.0, 'NoHit8672');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [565631.5,565828.5] to [-22500,-22500].  Width 300, indent 177.3, length 197
fill([565631.50,565651.20,565828.50,565651.20,565631.50,565631.50], ...
	[-22800.00,-22800.00,-22500.00,-22200.00,-22200.00,-22800.00], 'r-');
%% Text at position 565730.5,-22200:  
h = text(565730.5, -22200.0, '');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [566260.5,566685.5] to [-22500,-22500].  Width 300, indent 382.5, length 425
fill([566260.50,566303.00,566685.50,566303.00,566260.50,566260.50], ...
	[-22800.00,-22800.00,-22500.00,-22200.00,-22200.00,-22800.00], 'r-');
%% Text at position 566473.5,-22200:  
h = text(566473.5, -22200.0, '');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [568234.5,568437.5] to [-22500,-22500].  Width 300, indent 182.7, length 203
fill([568234.50,568254.80,568437.50,568254.80,568234.50,568234.50], ...
	[-22800.00,-22800.00,-22500.00,-22200.00,-22200.00,-22800.00], 'g-');
%% Text at position 568336.5,-22200:  YAR073W
h = text(568336.5, -22200.0, 'YAR073W');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% Plotting the boundaries for Sbay contig815
plot([530000,563562.5],[-27500,-27500],'k-');
plot([530000,530000],[-27000,-28000],'k-');
plot([563562.5,563562.5],[-27000,-28000],'k-');
%% Text at position 563562.5,-27800:  Sbay contig815
h = text(563562.5, -27800.0, 'Sbay contig815');
set(h,'VerticalAlignment','top')
set(h,'HorizontalAlignment','right')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
%% Hooks at the end of Sbay contig815
plot([530000,530000,530000],[-28000,-28000,-27900],'k-');
plot([563562.5,565770.5,565770.5],[-27000,-27000,-27100],'k-');
%% 
%% Arrow from [535715.5,537691.5] to [-27500,-27500].  Width 300, indent 400, length 1976
fill([535715.50,537291.50,537691.50,537291.50,535715.50,535715.50], ...
	[-27800.00,-27800.00,-27500.00,-27200.00,-27200.00,-27800.00], 'r-');
%% Text at position 536703.5,-27200:  
h = text(536703.5, -27200.0, '');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [538570.5,537836.5] to [-27500,-27500].  Width 300, indent 400, length 734
fill([538570.50,538236.50,537836.50,538236.50,538570.50,538570.50], ...
	[-27200.00,-27200.00,-27500.00,-27800.00,-27800.00,-27200.00], 'r-');
%% Text at position 538203.5,-27200:  
h = text(538203.5, -27200.0, '');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [539778.5,538879.5] to [-27500,-27500].  Width 300, indent 400, length 899
fill([539778.50,539279.50,538879.50,539279.50,539778.50,539778.50], ...
	[-27200.00,-27200.00,-27500.00,-27800.00,-27800.00,-27200.00], 'r-');
%% Text at position 539328.5,-27200:  
h = text(539328.5, -27200.0, '');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [540185.5,540009.5] to [-27500,-27500].  Width 300, indent 158.4, length 176
fill([540185.50,540167.90,540009.50,540167.90,540185.50,540185.50], ...
	[-27200.00,-27200.00,-27500.00,-27800.00,-27800.00,-27200.00], 'b-');
%% Text at position 540097.5,-27200:  YHR145C
h = text(540097.5, -27200.0, 'YHR145C');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [540319.5,540558.5] to [-27500,-27500].  Width 300, indent 215.1, length 239
fill([540319.50,540343.40,540558.50,540343.40,540319.50,540319.50], ...
	[-27800.00,-27800.00,-27500.00,-27200.00,-27200.00,-27800.00], 'w-');
%% Text at position 540438.5,-27200:  NoHit6939
h = text(540438.5, -27200.0, 'NoHit6939');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [541651.5,545067.5] to [-27500,-27500].  Width 300, indent 400, length 3416
fill([541651.50,544667.50,545067.50,544667.50,541651.50,541651.50], ...
	[-27800.00,-27800.00,-27500.00,-27200.00,-27200.00,-27800.00], 'r-');
%% Text at position 543359.5,-27200:  
h = text(543359.5, -27200.0, '');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [545633.5,546427.5] to [-27500,-27500].  Width 300, indent 400, length 794
fill([545633.50,546027.50,546427.50,546027.50,545633.50,545633.50], ...
	[-27800.00,-27800.00,-27500.00,-27200.00,-27200.00,-27800.00], 'r-');
%% Text at position 546030.5,-27200:  
h = text(546030.5, -27200.0, '');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [546462.5,546782.5] to [-27500,-27500].  Width 300, indent 288.0, length 320
fill([546462.50,546494.50,546782.50,546494.50,546462.50,546462.50], ...
	[-27800.00,-27800.00,-27500.00,-27200.00,-27200.00,-27800.00], 'w-');
%% Text at position 546622.5,-27200:  NoHit6954
h = text(546622.5, -27200.0, 'NoHit6954');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [546832.5,548094.5] to [-27500,-27500].  Width 300, indent 400, length 1262
fill([546832.50,547694.50,548094.50,547694.50,546832.50,546832.50], ...
	[-27800.00,-27800.00,-27500.00,-27200.00,-27200.00,-27800.00], 'r-');
%% Text at position 547463.5,-27200:  
h = text(547463.5, -27200.0, '');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [548431.5,548688.5] to [-27500,-27500].  Width 300, indent 231.3, length 257
fill([548431.50,548457.20,548688.50,548457.20,548431.50,548431.50], ...
	[-27800.00,-27800.00,-27500.00,-27200.00,-27200.00,-27800.00], 'b-');
%% Text at position 548559.5,-27200:  YER179W
h = text(548559.5, -27200.0, 'YER179W');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [548849.5,549520.5] to [-27500,-27500].  Width 300, indent 400, length 671
fill([548849.50,549120.50,549520.50,549120.50,548849.50,548849.50], ...
	[-27800.00,-27800.00,-27500.00,-27200.00,-27200.00,-27800.00], 'b-');
%% Text at position 549184.5,-27200:  YER179W
h = text(549184.5, -27200.0, 'YER179W');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [550503.5,549703.5] to [-27500,-27500].  Width 300, indent 400, length 800
fill([550503.50,550103.50,549703.50,550103.50,550503.50,550503.50], ...
	[-27200.00,-27200.00,-27500.00,-27800.00,-27800.00,-27200.00], 'r-');
%% Text at position 550103.5,-27200:  
h = text(550103.5, -27200.0, '');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [550925.5,551158.5] to [-27500,-27500].  Width 300, indent 209.7, length 233
fill([550925.50,550948.80,551158.50,550948.80,550925.50,550925.50], ...
	[-27800.00,-27800.00,-27500.00,-27200.00,-27200.00,-27800.00], 'w-');
%% Text at position 551041.5,-27200:  NoHit6966
h = text(551041.5, -27200.0, 'NoHit6966');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [552276.5,553007.5] to [-27500,-27500].  Width 300, indent 400, length 731
fill([552276.50,552607.50,553007.50,552607.50,552276.50,552276.50], ...
	[-27800.00,-27800.00,-27500.00,-27200.00,-27200.00,-27800.00], 'r-');
%% Text at position 552641.5,-27200:  
h = text(552641.5, -27200.0, '');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [553705.5,553070.5] to [-27500,-27500].  Width 300, indent 400, length 635
fill([553705.50,553470.50,553070.50,553470.50,553705.50,553705.50], ...
	[-27200.00,-27200.00,-27500.00,-27800.00,-27800.00,-27200.00], 'r-');
%% Text at position 553387.5,-27200:  
h = text(553387.5, -27200.0, '');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [556624.5,555347.5] to [-27500,-27500].  Width 300, indent 400, length 1277
fill([556624.50,555747.50,555347.50,555747.50,556624.50,556624.50], ...
	[-27200.00,-27200.00,-27500.00,-27800.00,-27800.00,-27200.00], 'r-');
%% Text at position 555985.5,-27200:  YGL256W
h = text(555985.5, -27200.0, 'YGL256W');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [557303.5,557058.5] to [-27500,-27500].  Width 300, indent 220.5, length 245
fill([557303.50,557279.00,557058.50,557279.00,557303.50,557303.50], ...
	[-27200.00,-27200.00,-27500.00,-27800.00,-27800.00,-27200.00], 'w-');
%% Text at position 557180.5,-27200:  NoHit6977
h = text(557180.5, -27200.0, 'NoHit6977');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [557353.5,557138.5] to [-27500,-27500].  Width 300, indent 193.5, length 215
fill([557353.50,557332.00,557138.50,557332.00,557353.50,557353.50], ...
	[-27200.00,-27200.00,-27500.00,-27800.00,-27800.00,-27200.00], 'w-');
%% Text at position 557245.5,-27200:  NoHit6978
h = text(557245.5, -27200.0, 'NoHit6978');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [557499.5,559160.5] to [-27500,-27500].  Width 300, indent 400, length 1661
fill([557499.50,558760.50,559160.50,558760.50,557499.50,557499.50], ...
	[-27800.00,-27800.00,-27500.00,-27200.00,-27200.00,-27800.00], 'r-');
%% Text at position 558329.5,-27200:  YGL257C
h = text(558329.5, -27200.0, 'YGL257C');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [561155.5,562567.5] to [-27500,-27500].  Width 300, indent 400, length 1412
fill([561155.50,562167.50,562567.50,562167.50,561155.50,561155.50], ...
	[-27800.00,-27800.00,-27500.00,-27200.00,-27200.00,-27800.00], 'g-');
%% Text at position 561861.5,-27200:  YBR297W
h = text(561861.5, -27200.0, 'YBR297W');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [536247.5,536600.5] to [-27500,-27500].  Width 300, indent 317.7, length 353
fill([536247.50,536282.80,536600.50,536282.80,536247.50,536247.50], ...
	[-27800.00,-27800.00,-27500.00,-27200.00,-27200.00,-27800.00], 'm-');
%% Text at position 536423.5,-27200:  TyElmt_5 hits at 56%
h = text(536423.5, -27200.0, 'TyElmt_5 hits at 56%');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [539747.5,540588.5] to [-27500,-27500].  Width 300, indent 400, length 841
fill([539747.50,540188.50,540588.50,540188.50,539747.50,539747.50], ...
	[-27800.00,-27800.00,-27500.00,-27200.00,-27200.00,-27800.00], 'm-');
%% Text at position 540167.5,-27200:  TyElmt_288 hits at 70%
h = text(540167.5, -27200.0, 'TyElmt_288 hits at 70%');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [551553.5,551773.5] to [-27500,-27500].  Width 300, indent 198.0, length 220
fill([551553.50,551575.50,551773.50,551575.50,551553.50,551553.50], ...
	[-27800.00,-27800.00,-27500.00,-27200.00,-27200.00,-27800.00], 'm-');
%% Text at position 551663.5,-27200:  TyElmt_24 hits at 64%
h = text(551663.5, -27200.0, 'TyElmt_24 hits at 64%');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [552193.5,552504.5] to [-27500,-27500].  Width 300, indent 279.9, length 311
fill([552193.50,552224.60,552504.50,552224.60,552193.50,552193.50], ...
	[-27800.00,-27800.00,-27500.00,-27200.00,-27200.00,-27800.00], 'm-');
%% Text at position 552348.5,-27200:  TyElmt_4 hits at 55%
h = text(552348.5, -27200.0, 'TyElmt_4 hits at 55%');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% Plotting the boundaries for Sbay contig481
plot([530000,564259],[-30000,-30000],'k-');
plot([530000,530000],[-29500,-30500],'k-');
plot([564259,564259],[-29500,-30500],'k-');
%% Text at position 564259,-30300:  Sbay contig481
h = text(564259.0, -30300.0, 'Sbay contig481');
set(h,'VerticalAlignment','top')
set(h,'HorizontalAlignment','right')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
%% Hooks at the end of Sbay contig481
plot([530000,530373,530373],[-30500,-30500,-30400],'k-');
plot([564259,564259,564259],[-29500,-29500,-29600],'k-');
%% 
%% Arrow from [552187,552471] to [-30000,-30000].  Width 300, indent 255.6, length 284
fill([552187.00,552215.40,552471.00,552215.40,552187.00,552187.00], ...
	[-30300.00,-30300.00,-30000.00,-29700.00,-29700.00,-30300.00], 'g-');
%% Text at position 552329,-29700:  YHR213W
h = text(552329.0, -29700.0, 'YHR213W');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [552641,552859] to [-30000,-30000].  Width 300, indent 196.2, length 218
fill([552641.00,552662.80,552859.00,552662.80,552641.00,552641.00], ...
	[-30300.00,-30300.00,-30000.00,-29700.00,-29700.00,-30300.00], 'g-');
%% Text at position 552750,-29700:  YAR050W
h = text(552750.0, -29700.0, 'YAR050W');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [553955,555367] to [-30000,-30000].  Width 300, indent 400, length 1412
fill([553955.00,554967.00,555367.00,554967.00,553955.00,553955.00], ...
	[-30300.00,-30300.00,-30000.00,-29700.00,-29700.00,-30300.00], 'b-');
%% Text at position 554661,-29700:  YNR058W
h = text(554661.0, -29700.0, 'YNR058W');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [555992,556144] to [-30000,-30000].  Width 300, indent 136.8, length 152
fill([555992.00,556007.20,556144.00,556007.20,555992.00,555992.00], ...
	[-30300.00,-30300.00,-30000.00,-29700.00,-29700.00,-30300.00], 'g-');
%% Text at position 556068,-29700:  YJR154W
h = text(556068.0, -29700.0, 'YJR154W');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [556588,556857] to [-30000,-30000].  Width 300, indent 242.1, length 269
fill([556588.00,556614.90,556857.00,556614.90,556588.00,556588.00], ...
	[-30300.00,-30300.00,-30000.00,-29700.00,-29700.00,-30300.00], 'g-');
%% Text at position 556722,-29700:  YJR154W
h = text(556722.0, -29700.0, 'YJR154W');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [557542,558945] to [-30000,-30000].  Width 300, indent 400, length 1403
fill([557542.00,558545.00,558945.00,558545.00,557542.00,557542.00], ...
	[-30300.00,-30300.00,-30000.00,-29700.00,-29700.00,-30300.00], 'b-');
%% Text at position 558243,-29700:  YHR215W
h = text(558243.0, -29700.0, 'YHR215W');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [561912,561700] to [-30000,-30000].  Width 300, indent 190.8, length 212
fill([561912.00,561890.80,561700.00,561890.80,561912.00,561912.00], ...
	[-29700.00,-29700.00,-30000.00,-30300.00,-30300.00,-29700.00], 'r-');
%% Text at position 561806,-29700:  
h = text(561806.0, -29700.0, '');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [562900,562679] to [-30000,-30000].  Width 300, indent 198.9, length 221
fill([562900.00,562877.90,562679.00,562877.90,562900.00,562900.00], ...
	[-29700.00,-29700.00,-30000.00,-30300.00,-30300.00,-29700.00], 'w-');
%% Text at position 562789,-29700:  NoHit11760
h = text(562789.0, -29700.0, 'NoHit11760');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [563191,564258] to [-30000,-30000].  Width 300, indent 400, length 1067
fill([563191.00,563858.00,564258.00,563858.00,563191.00,563191.00], ...
	[-30300.00,-30300.00,-30000.00,-29700.00,-29700.00,-30300.00], 'w-');
%% Text at position 563724,-29700:  NoHit11762
h = text(563724.0, -29700.0, 'NoHit11762');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [563523,563368] to [-30000,-30000].  Width 300, indent 139.5, length 155
fill([563523.00,563507.50,563368.00,563507.50,563523.00,563523.00], ...
	[-29700.00,-29700.00,-30000.00,-30300.00,-30300.00,-29700.00], 'w-');
%% Text at position 563445,-29700:  NoHit11763
h = text(563445.0, -29700.0, 'NoHit11763');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [558901,559692] to [-30000,-30000].  Width 300, indent 400, length 791
fill([558901.00,559292.00,559692.00,559292.00,558901.00,558901.00], ...
	[-30300.00,-30300.00,-30000.00,-29700.00,-29700.00,-30300.00], 'm-');
%% Text at position 559296,-29700:  TyElmt_288 hits at 59%
h = text(559296.0, -29700.0, 'TyElmt_288 hits at 59%');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [559942,561273] to [-30000,-30000].  Width 300, indent 400, length 1331
fill([559942.00,560873.00,561273.00,560873.00,559942.00,559942.00], ...
	[-30300.00,-30300.00,-30000.00,-29700.00,-29700.00,-30300.00], 'm-');
%% Text at position 560607,-29700:  TyElmt_281 hits at 67%
h = text(560607.0, -29700.0, 'TyElmt_281 hits at 67%');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% Plotting the boundaries for Sbay contig96
plot([545346,567398],[-32500,-32500],'k-');
plot([545346,545346],[-32000,-33000],'k-');
plot([567398,567398],[-32000,-33000],'k-');
%% Text at position 567398,-32800:  Sbay contig96
h = text(567398.0, -32800.0, 'Sbay contig96');
set(h,'VerticalAlignment','top')
set(h,'HorizontalAlignment','right')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
%% Hooks at the end of Sbay contig96
plot([545346,545310,545310],[-33000,-33000,-32900],'k-');
plot([567398,567398,567398],[-32000,-32000,-32100],'k-');
%% 
%% Arrow from [561963,561477] to [-32500,-32500].  Width 300, indent 400, length 486
fill([561963.00,561877.00,561477.00,561877.00,561963.00,561963.00], ...
	[-32200.00,-32200.00,-32500.00,-32800.00,-32800.00,-32200.00], 'm-');
%% Text at position 561720,-32200:  TyElmt_27 hits at 60%
h = text(561720.0, -32200.0, 'TyElmt_27 hits at 60%');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [565349,564935] to [-32500,-32500].  Width 300, indent 372.6, length 414
fill([565349.00,565307.60,564935.00,565307.60,565349.00,565349.00], ...
	[-32200.00,-32200.00,-32500.00,-32800.00,-32800.00,-32200.00], 'm-');
%% Text at position 565142,-32200:  TyElmt_261 hits at 68%
h = text(565142.0, -32200.0, 'TyElmt_261 hits at 68%');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [557628,556489] to [-32500,-32500].  Width 300, indent 400, length 1139
fill([557628.00,556889.00,556489.00,556889.00,557628.00,557628.00], ...
	[-32200.00,-32200.00,-32500.00,-32800.00,-32800.00,-32200.00], 'b-');
%% Text at position 557059,-32200:  YOR388C
h = text(557059.0, -32200.0, 'YOR388C');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [559285,561192] to [-32500,-32500].  Width 300, indent 400, length 1907
fill([559285.00,560792.00,561192.00,560792.00,559285.00,559285.00], ...
	[-32800.00,-32800.00,-32500.00,-32200.00,-32200.00,-32800.00], 'b-');
%% Text at position 560239,-32200:  YOR389W
h = text(560239.0, -32200.0, 'YOR389W');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [562471,562238] to [-32500,-32500].  Width 300, indent 209.7, length 233
fill([562471.00,562447.70,562238.00,562447.70,562471.00,562471.00], ...
	[-32200.00,-32200.00,-32500.00,-32800.00,-32800.00,-32200.00], 'r-');
%% Text at position 562355,-32200:  YGL262W
h = text(562355.0, -32200.0, 'YGL262W');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [563320,563631] to [-32500,-32500].  Width 300, indent 279.9, length 311
fill([563320.00,563351.10,563631.00,563351.10,563320.00,563320.00], ...
	[-32800.00,-32800.00,-32500.00,-32200.00,-32200.00,-32800.00], 'w-');
%% Text at position 563476,-32200:  NoHit18651
h = text(563476.0, -32200.0, 'NoHit18651');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [564270,564100] to [-32500,-32500].  Width 300, indent 153.0, length 170
fill([564270.00,564253.00,564100.00,564253.00,564270.00,564270.00], ...
	[-32200.00,-32200.00,-32500.00,-32800.00,-32800.00,-32200.00], 'w-');
%% Text at position 564185,-32200:  NoHit18647
h = text(564185.0, -32200.0, 'NoHit18647');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [564080,564421] to [-32500,-32500].  Width 300, indent 306.9, length 341
fill([564080.00,564114.10,564421.00,564114.10,564080.00,564080.00], ...
	[-32800.00,-32800.00,-32500.00,-32200.00,-32200.00,-32800.00], 'w-');
%% Text at position 564251,-32200:  NoHit18646
h = text(564251.0, -32200.0, 'NoHit18646');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [565667,565963] to [-32500,-32500].  Width 300, indent 266.4, length 296
fill([565667.00,565696.60,565963.00,565696.60,565667.00,565667.00], ...
	[-32800.00,-32800.00,-32500.00,-32200.00,-32200.00,-32800.00], 'r-');
%% Text at position 565815,-32200:  
h = text(565815.0, -32200.0, '');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [567042,566503] to [-32500,-32500].  Width 300, indent 400, length 539
fill([567042.00,566903.00,566503.00,566903.00,567042.00,567042.00], ...
	[-32200.00,-32200.00,-32500.00,-32800.00,-32800.00,-32200.00], 'w-');
%% Text at position 566773,-32200:  NoHit18639
h = text(566773.0, -32200.0, 'NoHit18639');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [566933,567148] to [-32500,-32500].  Width 300, indent 193.5, length 215
fill([566933.00,566954.50,567148.00,566954.50,566933.00,566933.00], ...
	[-32800.00,-32800.00,-32500.00,-32200.00,-32200.00,-32800.00], 'w-');
%% Text at position 567041,-32200:  NoHit18638
h = text(567041.0, -32200.0, 'NoHit18638');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [567276,567091] to [-32500,-32500].  Width 300, indent 166.5, length 185
fill([567276.00,567257.50,567091.00,567257.50,567276.00,567276.00], ...
	[-32200.00,-32200.00,-32500.00,-32800.00,-32800.00,-32200.00], 'w-');
%% Text at position 567184,-32200:  NoHit18637
h = text(567184.0, -32200.0, 'NoHit18637');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% Plotting the boundaries for Sbay contig114
plot([565174,585577],[-35000,-35000],'k-');
plot([565174,565174],[-34500,-35500],'k-');
plot([585577,585577],[-34500,-35500],'k-');
%% Text at position 585577,-35300:  Sbay contig114
h = text(585577.0, -35300.0, 'Sbay contig114');
set(h,'VerticalAlignment','top')
set(h,'HorizontalAlignment','right')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
%% Hooks at the end of Sbay contig114
plot([565174,565606,565606],[-35500,-35500,-35400],'k-');
plot([585577,585488,585488],[-34500,-34500,-34600],'k-');
%% 
%% Arrow from [566793,565177] to [-35000,-35000].  Width 300, indent 400, length 1616
fill([566793.00,565577.00,565177.00,565577.00,566793.00,566793.00], ...
	[-34700.00,-34700.00,-35000.00,-35300.00,-35300.00,-34700.00], 'b-');
%% Text at position 565985,-34700:  YBR081C
h = text(565985.0, -34700.0, 'YBR081C');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [568035,568298] to [-35000,-35000].  Width 300, indent 236.7, length 263
fill([568035.00,568061.30,568298.00,568061.30,568035.00,568035.00], ...
	[-35300.00,-35300.00,-35000.00,-34700.00,-34700.00,-35300.00], 'r-');
%% Text at position 568166,-34700:  
h = text(568166.0, -34700.0, '');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [569587,569255] to [-35000,-35000].  Width 300, indent 298.8, length 332
fill([569587.00,569553.80,569255.00,569553.80,569587.00,569587.00], ...
	[-34700.00,-34700.00,-35000.00,-35300.00,-35300.00,-34700.00], 'r-');
%% Text at position 569421,-34700:  YBR082C
h = text(569421.0, -34700.0, 'YBR082C');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [569858,570358] to [-35000,-35000].  Width 300, indent 400, length 500
fill([569858.00,569958.00,570358.00,569958.00,569858.00,569858.00], ...
	[-35300.00,-35300.00,-35000.00,-34700.00,-34700.00,-35300.00], 'w-');
%% Text at position 570108,-34700:  NoHit907
h = text(570108.0, -34700.0, 'NoHit907');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [571858,573321] to [-35000,-35000].  Width 300, indent 400, length 1463
fill([571858.00,572921.00,573321.00,572921.00,571858.00,571858.00], ...
	[-35300.00,-35300.00,-35000.00,-34700.00,-34700.00,-35300.00], 'r-');
%% Text at position 572589,-34700:  YBR083W
h = text(572589.0, -34700.0, 'YBR083W');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [573822,576749] to [-35000,-35000].  Width 300, indent 400, length 2927
fill([573822.00,576349.00,576749.00,576349.00,573822.00,573822.00], ...
	[-35300.00,-35300.00,-35000.00,-34700.00,-34700.00,-35300.00], 'r-');
%% Text at position 575285,-34700:  YBR084W
h = text(575285.0, -34700.0, 'YBR084W');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [565928,567005] to [-35000,-35000].  Width 300, indent 400, length 1077
fill([565928.00,566605.00,567005.00,566605.00,565928.00,565928.00], ...
	[-35300.00,-35300.00,-35000.00,-34700.00,-34700.00,-35300.00], 'm-');
%% Text at position 566466,-34700:  TyElmt_14 hits at 55%
h = text(566466.0, -34700.0, 'TyElmt_14 hits at 55%');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [567836,568062] to [-35000,-35000].  Width 300, indent 203.4, length 226
fill([567836.00,567858.60,568062.00,567858.60,567836.00,567836.00], ...
	[-35300.00,-35300.00,-35000.00,-34700.00,-34700.00,-35300.00], 'm-');
%% Text at position 567949,-34700:  TyElmt_20 hits at 62%
h = text(567949.0, -34700.0, 'TyElmt_20 hits at 62%');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% 
%% Plot x_dashed vs. y_dashed
%% 
%% 
%% Seting variable x_dashed.  4 values, [min,avg,max]=[550379.5..550482.125..550523.5]
x_dashed = [...
	  550522,550379.5,550523.5,550503.5];
%% Seting variable y_dashed.  4 values, [min,avg,max]=[-27500..-14375..-5000]
y_dashed = [...
	-5000,-10000,-15000,-27500];
plot(x_dashed, y_dashed, 'k.:')
%% 
%% 
%% Plot x_dashed vs. y_dashed
%% 
%% 
%% Seting variable x_dashed.  4 values, [min,avg,max]=[549576.5..549679.875..549720.5]
x_dashed = [...
	  549719,549576.5,549720.5,549703.5];
%% Seting variable y_dashed.  4 values, [min,avg,max]=[-27500..-14375..-5000]
y_dashed = [...
	-5000,-10000,-15000,-27500];
plot(x_dashed, y_dashed, 'k.:')
%% 
%% 
%% Plot x_dashed vs. y_dashed
%% 
%% 
%% Seting variable x_dashed.  3 values, [min,avg,max]=[568035..568083.833333..568181.5]
x_dashed = [...
	  568035,568181.5,  568035];
%% Seting variable y_dashed.  3 values, [min,avg,max]=[-35000..-16667..-5000]
y_dashed = [...
	-5000,-10000,-35000];
plot(x_dashed, y_dashed, 'k.:')
%% 
%% 
%% Plot x_dashed vs. y_dashed
%% 
%% 
%% Seting variable x_dashed.  3 values, [min,avg,max]=[568298..568567.833333..568754]
x_dashed = [...
	568754,568651.5,568298];
%% Seting variable y_dashed.  3 values, [min,avg,max]=[-35000..-16667..-5000]
y_dashed = [...
	-5000,-10000,-35000];
plot(x_dashed, y_dashed, 'k.:')
%% 
%% 
%% Plot x_dashed vs. y_dashed
%% 
%% 
%% Seting variable x_dashed.  2 values, [min,avg,max]=[559449..559644.75..559840.5]
x_dashed = [...
	  559449,559840.5];
%% Seting variable y_dashed.  2 values, [min,avg,max]=[-10000..-7500..-5000]
y_dashed = [...
	-5000,-10000];
plot(x_dashed, y_dashed, 'k.:')
%% 
%% 
%% Plot x_dashed vs. y_dashed
%% 
%% 
%% Seting variable x_dashed.  2 values, [min,avg,max]=[560360..560555.75..560751.5]
x_dashed = [...
	  560360,560751.5];
%% Seting variable y_dashed.  2 values, [min,avg,max]=[-10000..-7500..-5000]
y_dashed = [...
	-5000,-10000];
plot(x_dashed, y_dashed, 'k.:')
%% 
%% 
%% Plot x_dashed vs. y_dashed
%% 
%% 
%% Seting variable x_dashed.  4 values, [min,avg,max]=[545447.5..545561.125..545633.5]
x_dashed = [...
	  545606,545447.5,545557.5,545633.5];
%% Seting variable y_dashed.  4 values, [min,avg,max]=[-27500..-14375..-5000]
y_dashed = [...
	-5000,-10000,-15000,-27500];
plot(x_dashed, y_dashed, 'k.:')
%% 
%% 
%% Plot x_dashed vs. y_dashed
%% 
%% 
%% Seting variable x_dashed.  4 values, [min,avg,max]=[546247.5..546367.125..546427.5]
x_dashed = [...
	  546409,546247.5,546384.5,546427.5];
%% Seting variable y_dashed.  4 values, [min,avg,max]=[-27500..-14375..-5000]
y_dashed = [...
	-5000,-10000,-15000,-27500];
plot(x_dashed, y_dashed, 'k.:')
%% 
%% 
%% Plot x_dashed vs. y_dashed
%% 
%% 
%% Seting variable x_dashed.  2 values, [min,avg,max]=[566225..566242.75..566260.5]
x_dashed = [...
	  566225,566260.5];
%% Seting variable y_dashed.  2 values, [min,avg,max]=[-22500..-13750..-5000]
y_dashed = [...
	-5000,-22500];
plot(x_dashed, y_dashed, 'k.:')
%% 
%% 
%% Plot x_dashed vs. y_dashed
%% 
%% 
%% Seting variable x_dashed.  2 values, [min,avg,max]=[566650..566667.75..566685.5]
x_dashed = [...
	  566650,566685.5];
%% Seting variable y_dashed.  2 values, [min,avg,max]=[-22500..-13750..-5000]
y_dashed = [...
	-5000,-22500];
plot(x_dashed, y_dashed, 'k.:')
%% 
%% 
%% Plot x_dashed vs. y_dashed
%% 
%% 
%% Seting variable x_dashed.  3 values, [min,avg,max]=[535715.5..535981.166667..536121.5]
x_dashed = [...
	536106.5,536121.5,535715.5];
%% Seting variable y_dashed.  3 values, [min,avg,max]=[-27500..-17500..-10000]
y_dashed = [...
	-10000,-15000,-27500];
plot(x_dashed, y_dashed, 'k.:')
%% 
%% 
%% Plot x_dashed vs. y_dashed
%% 
%% 
%% Seting variable x_dashed.  3 values, [min,avg,max]=[537691.5..537985.166667..538184.5]
x_dashed = [...
	538079.5,538184.5,537691.5];
%% Seting variable y_dashed.  3 values, [min,avg,max]=[-27500..-17500..-10000]
y_dashed = [...
	-10000,-15000,-27500];
plot(x_dashed, y_dashed, 'k.:')
%% 
%% 
%% Plot x_dashed vs. y_dashed
%% 
%% 
%% Seting variable x_dashed.  4 values, [min,avg,max]=[553705.5..553920.75..554057.5]
x_dashed = [...
	  553964,554057.5,553956.0,553705.5];
%% Seting variable y_dashed.  4 values, [min,avg,max]=[-27500..-15625..-5000]
y_dashed = [...
	-5000,-10000,-20000,-27500];
plot(x_dashed, y_dashed, 'k.:')
%% 
%% 
%% Plot x_dashed vs. y_dashed
%% 
%% 
%% Seting variable x_dashed.  4 values, [min,avg,max]=[553070.5..553285.75..553422.5]
x_dashed = [...
	  553329,553422.5,553321.0,553070.5];
%% Seting variable y_dashed.  4 values, [min,avg,max]=[-27500..-15625..-5000]
y_dashed = [...
	-5000,-10000,-20000,-27500];
plot(x_dashed, y_dashed, 'k.:')
%% 
%% 
%% Plot x_dashed vs. y_dashed
%% 
%% 
%% Seting variable x_dashed.  4 values, [min,avg,max]=[546649.5..546752.875..546832.5]
x_dashed = [...
	  546743,546649.5,546786.5,546832.5];
%% Seting variable y_dashed.  4 values, [min,avg,max]=[-27500..-14375..-5000]
y_dashed = [...
	-5000,-10000,-15000,-27500];
plot(x_dashed, y_dashed, 'k.:')
%% 
%% 
%% Plot x_dashed vs. y_dashed
%% 
%% 
%% Seting variable x_dashed.  4 values, [min,avg,max]=[547911.5..548032.125..548094.5]
x_dashed = [...
	  548074,547911.5,548048.5,548094.5];
%% Seting variable y_dashed.  4 values, [min,avg,max]=[-27500..-14375..-5000]
y_dashed = [...
	-5000,-10000,-15000,-27500];
plot(x_dashed, y_dashed, 'k.:')
%% 
%% 
%% Plot x_dashed vs. y_dashed
%% 
%% 
%% Seting variable x_dashed.  3 values, [min,avg,max]=[538570.5..538872.166667..539070.5]
x_dashed = [...
	538975.5,539070.5,538570.5];
%% Seting variable y_dashed.  3 values, [min,avg,max]=[-27500..-17500..-10000]
y_dashed = [...
	-10000,-15000,-27500];
plot(x_dashed, y_dashed, 'k.:')
%% 
%% 
%% Plot x_dashed vs. y_dashed
%% 
%% 
%% Seting variable x_dashed.  3 values, [min,avg,max]=[537836.5..538138.166667..538336.5]
x_dashed = [...
	538241.5,538336.5,537836.5];
%% Seting variable y_dashed.  3 values, [min,avg,max]=[-27500..-17500..-10000]
y_dashed = [...
	-10000,-15000,-27500];
plot(x_dashed, y_dashed, 'k.:')
%% 
%% 
%% Plot x_dashed vs. y_dashed
%% 
%% 
%% Seting variable x_dashed.  2 values, [min,avg,max]=[558675..558853.25..559031.5]
x_dashed = [...
	  558675,559031.5];
%% Seting variable y_dashed.  2 values, [min,avg,max]=[-10000..-7500..-5000]
y_dashed = [...
	-5000,-10000];
plot(x_dashed, y_dashed, 'k.:')
%% 
%% 
%% Plot x_dashed vs. y_dashed
%% 
%% 
%% Seting variable x_dashed.  2 values, [min,avg,max]=[556291..556479.75..556668.5]
x_dashed = [...
	  556291,556668.5];
%% Seting variable y_dashed.  2 values, [min,avg,max]=[-10000..-7500..-5000]
y_dashed = [...
	-5000,-10000];
plot(x_dashed, y_dashed, 'k.:')
%% 
%% 
%% Plot x_dashed vs. y_dashed
%% 
%% 
%% Seting variable x_dashed.  4 values, [min,avg,max]=[548292.5..548388.625..548431.5]
x_dashed = [...
	  548416,548292.5,548414.5,548431.5];
%% Seting variable y_dashed.  4 values, [min,avg,max]=[-27500..-14375..-5000]
y_dashed = [...
	-5000,-10000,-15000,-27500];
plot(x_dashed, y_dashed, 'k.:')
%% 
%% 
%% Plot x_dashed vs. y_dashed
%% 
%% 
%% Seting variable x_dashed.  4 values, [min,avg,max]=[549387.5..549485.375..549521.5]
x_dashed = [...
	  549512,549387.5,549521.5,549520.5];
%% Seting variable y_dashed.  4 values, [min,avg,max]=[-27500..-14375..-5000]
y_dashed = [...
	-5000,-10000,-15000,-27500];
plot(x_dashed, y_dashed, 'k.:')
%% 
%% 
%% Plot x_dashed vs. y_dashed
%% 
%% 
%% Seting variable x_dashed.  2 values, [min,avg,max]=[569361.5..570418.25..571475]
x_dashed = [...
	571475,569361.5];
%% Seting variable y_dashed.  2 values, [min,avg,max]=[-10000..-7500..-5000]
y_dashed = [...
	-5000,-10000];
plot(x_dashed, y_dashed, 'k.:')
%% 
%% 
%% Plot x_dashed vs. y_dashed
%% 
%% 
%% Seting variable x_dashed.  2 values, [min,avg,max]=[571416.5..573968.25..576520]
x_dashed = [...
	576520,571416.5];
%% Seting variable y_dashed.  2 values, [min,avg,max]=[-10000..-7500..-5000]
y_dashed = [...
	-5000,-10000];
plot(x_dashed, y_dashed, 'k.:')
%% 
%% 
%% Plot x_dashed vs. y_dashed
%% 
%% 
%% Seting variable x_dashed.  4 values, [min,avg,max]=[565631.5..565698.75..565829.5]
x_dashed = [...
	  565667,565829.5,565631.5,  565667];
%% Seting variable y_dashed.  4 values, [min,avg,max]=[-32500..-17500..-5000]
y_dashed = [...
	-5000,-10000,-22500,-32500];
plot(x_dashed, y_dashed, 'k.:')
%% 
%% 
%% Plot x_dashed vs. y_dashed
%% 
%% 
%% Seting variable x_dashed.  4 values, [min,avg,max]=[565828.5..566276.0..567052.5]
x_dashed = [...
	  566260,567052.5,565828.5,  565963];
%% Seting variable y_dashed.  4 values, [min,avg,max]=[-32500..-17500..-5000]
y_dashed = [...
	-5000,-10000,-22500,-32500];
plot(x_dashed, y_dashed, 'k.:')
%% 
%% 
%% Plot x_dashed vs. y_dashed
%% 
%% 
%% Seting variable x_dashed.  3 values, [min,avg,max]=[539778.5..540074.833333..540274.5]
x_dashed = [...
	540171.5,540274.5,539778.5];
%% Seting variable y_dashed.  3 values, [min,avg,max]=[-27500..-17500..-10000]
y_dashed = [...
	-10000,-15000,-27500];
plot(x_dashed, y_dashed, 'k.:')
%% 
%% 
%% Plot x_dashed vs. y_dashed
%% 
%% 
%% Seting variable x_dashed.  3 values, [min,avg,max]=[538879.5..539175.833333..539375.5]
x_dashed = [...
	539272.5,539375.5,538879.5];
%% Seting variable y_dashed.  3 values, [min,avg,max]=[-27500..-17500..-10000]
y_dashed = [...
	-10000,-15000,-27500];
plot(x_dashed, y_dashed, 'k.:')
%% 
%% 
%% Plot x_dashed vs. y_dashed
%% 
%% 
%% Seting variable x_dashed.  2 values, [min,avg,max]=[551791..551810..551830]
x_dashed = [...
	551791,551830];
%% Seting variable y_dashed.  2 values, [min,avg,max]=[-17500..-11250..-5000]
y_dashed = [...
	-5000,-17500];
plot(x_dashed, y_dashed, 'k.:')
%% 
%% 
%% Plot x_dashed vs. y_dashed
%% 
%% 
%% Seting variable x_dashed.  2 values, [min,avg,max]=[551468..551468..551468]
x_dashed = [...
	551468,551468];
%% Seting variable y_dashed.  2 values, [min,avg,max]=[-17500..-11250..-5000]
y_dashed = [...
	-5000,-17500];
plot(x_dashed, y_dashed, 'k.:')
%% 
%% 
%% Plot x_dashed vs. y_dashed
%% 
%% 
%% Seting variable x_dashed.  2 values, [min,avg,max]=[568854.5..570002.25..571150]
x_dashed = [...
	571150,568854.5];
%% Seting variable y_dashed.  2 values, [min,avg,max]=[-10000..-7500..-5000]
y_dashed = [...
	-5000,-10000];
plot(x_dashed, y_dashed, 'k.:')
%% 
%% 
%% Plot x_dashed vs. y_dashed
%% 
%% 
%% Seting variable x_dashed.  2 values, [min,avg,max]=[569243.5..570380.75..571518]
x_dashed = [...
	571518,569243.5];
%% Seting variable y_dashed.  2 values, [min,avg,max]=[-10000..-7500..-5000]
y_dashed = [...
	-5000,-10000];
plot(x_dashed, y_dashed, 'k.:')
%% 
%% 
%% Plot x_dashed vs. y_dashed
%% 
%% 
%% Seting variable x_dashed.  4 values, [min,avg,max]=[552276.5..552488.5..552629.5]
x_dashed = [...
	  552520,552629.5,552528.0,552276.5];
%% Seting variable y_dashed.  4 values, [min,avg,max]=[-27500..-15625..-5000]
y_dashed = [...
	-5000,-10000,-20000,-27500];
plot(x_dashed, y_dashed, 'k.:')
%% 
%% 
%% Plot x_dashed vs. y_dashed
%% 
%% 
%% Seting variable x_dashed.  4 values, [min,avg,max]=[553007.5..553210.5..553342.5]
x_dashed = [...
	  553254,553342.5,553238.0,553007.5];
%% Seting variable y_dashed.  4 values, [min,avg,max]=[-27500..-15625..-5000]
y_dashed = [...
	-5000,-10000,-20000,-27500];
plot(x_dashed, y_dashed, 'k.:')
%% 
%% 
%% Plot x_dashed vs. y_dashed
%% 
%% 
%% Seting variable x_dashed.  4 values, [min,avg,max]=[541517.5..541616.875..541685]
x_dashed = [...
	541685,541517.5,541613.5,541651.5];
%% Seting variable y_dashed.  4 values, [min,avg,max]=[-27500..-14375..-5000]
y_dashed = [...
	-5000,-10000,-15000,-27500];
plot(x_dashed, y_dashed, 'k.:')
%% 
%% 
%% Plot x_dashed vs. y_dashed
%% 
%% 
%% Seting variable x_dashed.  4 values, [min,avg,max]=[544885.5..544997.625..545067.5]
x_dashed = [...
	  545050,544885.5,544987.5,545067.5];
%% Seting variable y_dashed.  4 values, [min,avg,max]=[-27500..-14375..-5000]
y_dashed = [...
	-5000,-10000,-15000,-27500];
plot(x_dashed, y_dashed, 'k.:')
%% 
%% 
%% Plot x_dashed vs. y_dashed
%% 
%% 
%% Seting variable x_dashed.  3 values, [min,avg,max]=[561912..562516.833333..563018.5]
x_dashed = [...
	  562620,563018.5,  561912];
%% Seting variable y_dashed.  3 values, [min,avg,max]=[-30000..-15000..-5000]
y_dashed = [...
	-5000,-10000,-30000];
plot(x_dashed, y_dashed, 'k.:')
%% 
%% 
%% Plot x_dashed vs. y_dashed
%% 
%% 
%% Seting variable x_dashed.  3 values, [min,avg,max]=[561700..561867.166667..562201.5]
x_dashed = [...
	  561700,562201.5,  561700];
%% Seting variable y_dashed.  3 values, [min,avg,max]=[-30000..-15000..-5000]
y_dashed = [...
	-5000,-10000,-30000];
plot(x_dashed, y_dashed, 'k.:')
ax = axis;
axis([ax(1),ax(2),ax(3),0]);
h = gcf;
h2 = get(h,'CurrentAxes');
set(h2,'YAxisLocation','right');
title('Scer ChrV tile 12 positions 550kbp to 576kbp aligned against Spar Smik Sbay');
