clear; clf; 
hold on;
%% Plotting the boundaries for Scer chr3
plot([295000,320339],[-5000,-5000],'k-');
plot([295000,295000],[-4500,-5500],'k-');
plot([320339,320339],[-4500,-5500],'k-');
%% Text at position 320339,-5300:  Scer chr3
h = text(320339.0, -5300.0, 'Scer chr3');
set(h,'VerticalAlignment','top')
set(h,'HorizontalAlignment','right')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
%% Hooks at the end of Scer chr3
plot([295000,295000,295000],[-5500,-5500,-5400],'k-');
plot([320339,320339,320339],[-4500,-4500,-4600],'k-');
%% 
%% Arrow from [297327,295771] to [-5000,-5000].  Width 300, indent 400, length 1556
fill([297327.00,296171.00,295771.00,296171.00,297327.00,297327.00], ...
	[-4700.00,-4700.00,-5000.00,-5300.00,-5300.00,-4700.00], 'r-');
%% Text at position 296549,-4700:  YCR098C (GIT1)
h = text(296549.0, -4700.0, 'YCR098C (GIT1)');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [300021,299554] to [-5000,-5000].  Width 300, indent 400, length 467
fill([300021.00,299954.00,299554.00,299954.00,300021.00,300021.00], ...
	[-4700.00,-4700.00,-5000.00,-5300.00,-5300.00,-4700.00], 'b-');
%% Text at position 299787,-4700:  YCR099C
h = text(299787.0, -4700.0, 'YCR099C');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [300943,299993] to [-5000,-5000].  Width 300, indent 400, length 950
fill([300943.00,300393.00,299993.00,300393.00,300943.00,300943.00], ...
	[-4700.00,-4700.00,-5000.00,-5300.00,-5300.00,-4700.00], 'b-');
%% Text at position 300468,-4700:  YCR100C
h = text(300468.0, -4700.0, 'YCR100C');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [301752,301204] to [-5000,-5000].  Width 300, indent 400, length 548
fill([301752.00,301604.00,301204.00,301604.00,301752.00,301752.00], ...
	[-4700.00,-4700.00,-5000.00,-5300.00,-5300.00,-4700.00], 'b-');
%% Text at position 301478,-4700:  YCR101C
h = text(301478.0, -4700.0, 'YCR101C');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [304189,303083] to [-5000,-5000].  Width 300, indent 400, length 1106
fill([304189.00,303483.00,303083.00,303483.00,304189.00,304189.00], ...
	[-4700.00,-4700.00,-5000.00,-5300.00,-5300.00,-4700.00], 'b-');
%% Text at position 303636,-4700:  YCR102C
h = text(303636.0, -4700.0, 'YCR102C');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [305455,305652] to [-5000,-5000].  Width 300, indent 177.3, length 197
fill([305455.00,305474.70,305652.00,305474.70,305455.00,305455.00], ...
	[-5300.00,-5300.00,-5000.00,-4700.00,-4700.00,-5300.00], 'b-');
%% Text at position 305553,-4700:  YCR102W-A
h = text(305553.0, -4700.0, 'YCR102W-A');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [306310,305975] to [-5000,-5000].  Width 300, indent 301.5, length 335
fill([306310.00,306276.50,305975.00,306276.50,306310.00,306310.00], ...
	[-4700.00,-4700.00,-5000.00,-5300.00,-5300.00,-4700.00], 'w-');
%% Text at position 306142,-4700:  YCR103C
h = text(306142.0, -4700.0, 'YCR103C');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [306519,306893] to [-5000,-5000].  Width 300, indent 336.6, length 374
fill([306519.00,306556.40,306893.00,306556.40,306519.00,306519.00], ...
	[-5300.00,-5300.00,-5000.00,-4700.00,-4700.00,-5300.00], 'b-');
%% Text at position 306706,-4700:  YCR104W (PAU3)
h = text(306706.0, -4700.0, 'YCR104W (PAU3)');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [307789,308874] to [-5000,-5000].  Width 300, indent 400, length 1085
fill([307789.00,308474.00,308874.00,308474.00,307789.00,307789.00], ...
	[-5300.00,-5300.00,-5000.00,-4700.00,-4700.00,-5300.00], 'b-');
%% Text at position 308331,-4700:  YCR105W
h = text(308331.0, -4700.0, 'YCR105W');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [309677,312175] to [-5000,-5000].  Width 300, indent 400, length 2498
fill([309677.00,311775.00,312175.00,311775.00,309677.00,309677.00], ...
	[-5300.00,-5300.00,-5000.00,-4700.00,-4700.00,-5300.00], 'r-');
%% Text at position 310926,-4700:  YCR106W
h = text(310926.0, -4700.0, 'YCR106W');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [312609,313700] to [-5000,-5000].  Width 300, indent 400, length 1091
fill([312609.00,313300.00,313700.00,313300.00,312609.00,312609.00], ...
	[-5300.00,-5300.00,-5000.00,-4700.00,-4700.00,-5300.00], 'b-');
%% Text at position 313154,-4700:  YCR107W (AAD3)
h = text(313154.0, -4700.0, 'YCR107W (AAD3)');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% Plotting the boundaries for Spar contig91
plot([291591.5,304309.5],[-10000,-10000],'k-');
plot([291591.5,291591.5],[-9500,-10500],'k-');
plot([304309.5,304309.5],[-9500,-10500],'k-');
%% Text at position 304309.5,-10300:  Spar contig91
h = text(304309.5, -10300.0, 'Spar contig91');
set(h,'VerticalAlignment','top')
set(h,'HorizontalAlignment','right')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
%% Hooks at the end of Spar contig91
plot([291591.5,290552.5,290552.5],[-10500,-10500,-10400],'k-');
plot([304309.5,305944.5,305944.5],[-9500,-9500,-9600],'k-');
%% 
%% Arrow from [292097.5,292255.5] to [-10000,-10000].  Width 300, indent 142.2, length 158
fill([292097.50,292113.30,292255.50,292113.30,292097.50,292097.50], ...
	[-10300.00,-10300.00,-10000.00,-9700.00,-9700.00,-10300.00], 'g-');
%% Text at position 292176.5,-9700:  YIL060W
h = text(292176.5, -9700.0, 'YIL060W');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [296662.5,295106.5] to [-10000,-10000].  Width 300, indent 400, length 1556
fill([296662.50,295506.50,295106.50,295506.50,296662.50,296662.50], ...
	[-9700.00,-9700.00,-10000.00,-10300.00,-10300.00,-9700.00], 'r-');
%% Text at position 295884.5,-9700:  
h = text(295884.5, -9700.0, '');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [300310.5,298166.5] to [-10000,-10000].  Width 300, indent 400, length 2144
fill([300310.50,298566.50,298166.50,298566.50,300310.50,300310.50], ...
	[-9700.00,-9700.00,-10000.00,-10300.00,-10300.00,-9700.00], 'b-');
%% Text at position 299238.5,-9700:  YJL222W
h = text(299238.5, -9700.0, 'YJL222W');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [302942.5,300657.5] to [-10000,-10000].  Width 300, indent 400, length 2285
fill([302942.50,301057.50,300657.50,301057.50,302942.50,302942.50], ...
	[-9700.00,-9700.00,-10000.00,-10300.00,-10300.00,-9700.00], 'b-');
%% Text at position 301799.5,-9700:  YCR100C
h = text(301799.5, -9700.0, 'YCR100C');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [304128.5,304307.5] to [-10000,-10000].  Width 300, indent 161.1, length 179
fill([304128.50,304146.40,304307.50,304146.40,304128.50,304128.50], ...
	[-10300.00,-10300.00,-10000.00,-9700.00,-9700.00,-10300.00], 'y-');
%% Text at position 304217.5,-9700:  ParYLR459W
h = text(304217.5, -9700.0, 'ParYLR459W');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [291963.5,293068.5] to [-10000,-10000].  Width 300, indent 400, length 1105
fill([291963.50,292668.50,293068.50,292668.50,291963.50,291963.50], ...
	[-10300.00,-10300.00,-10000.00,-9700.00,-9700.00,-10300.00], 'm-');
%% Text at position 292515.5,-9700:  TyElmt_6 hits at 70%
h = text(292515.5, -9700.0, 'TyElmt_6 hits at 70%');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% Plotting the boundaries for Spar contig450
plot([280000,315197.5],[-12500,-12500],'k-');
plot([280000,280000],[-12000,-13000],'k-');
plot([315197.5,315197.5],[-12000,-13000],'k-');
%% Text at position 315197.5,-12800:  Spar contig450
h = text(315197.5, -12800.0, 'Spar contig450');
set(h,'VerticalAlignment','top')
set(h,'HorizontalAlignment','right')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
%% Hooks at the end of Spar contig450
plot([280000,279565,279565],[-13000,-13000,-12900],'k-');
plot([315197.5,314422.5,314422.5],[-12000,-12000,-12100],'k-');
%% 
%% Arrow from [300648.5,303680.5] to [-12500,-12500].  Width 300, indent 400, length 3032
fill([300648.50,303280.50,303680.50,303280.50,300648.50,300648.50], ...
	[-12800.00,-12800.00,-12500.00,-12200.00,-12200.00,-12800.00], 'r-');
%% Text at position 302164.5,-12200:  YBL106C
h = text(302164.5, -12200.0, 'YBL106C');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [303979.5,304569.5] to [-12500,-12500].  Width 300, indent 400, length 590
fill([303979.50,304169.50,304569.50,304169.50,303979.50,303979.50], ...
	[-12800.00,-12800.00,-12500.00,-12200.00,-12200.00,-12800.00], 'r-');
%% Text at position 304274.5,-12200:  YBL107C
h = text(304274.5, -12200.0, 'YBL107C');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [306468.5,306842.5] to [-12500,-12500].  Width 300, indent 336.6, length 374
fill([306468.50,306505.90,306842.50,306505.90,306468.50,306468.50], ...
	[-12800.00,-12800.00,-12500.00,-12200.00,-12200.00,-12800.00], 'g-');
%% Text at position 306655.5,-12200:  YCR104W
h = text(306655.5, -12200.0, 'YCR104W');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [307720.5,308805.5] to [-12500,-12500].  Width 300, indent 400, length 1085
fill([307720.50,308405.50,308805.50,308405.50,307720.50,307720.50], ...
	[-12800.00,-12800.00,-12500.00,-12200.00,-12200.00,-12800.00], 'r-');
%% Text at position 308262.5,-12200:  
h = text(308262.5, -12200.0, '');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [309755.5,312250.5] to [-12500,-12500].  Width 300, indent 400, length 2495
fill([309755.50,311850.50,312250.50,311850.50,309755.50,309755.50], ...
	[-12800.00,-12800.00,-12500.00,-12200.00,-12200.00,-12800.00], 'r-');
%% Text at position 311002.5,-12200:  
h = text(311002.5, -12200.0, '');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [312659.5,313645.5] to [-12500,-12500].  Width 300, indent 400, length 986
fill([312659.50,313245.50,313645.50,313245.50,312659.50,312659.50], ...
	[-12800.00,-12800.00,-12500.00,-12200.00,-12200.00,-12800.00], 'b-');
%% Text at position 313152.5,-12200:  YCR107W
h = text(313152.5, -12200.0, 'YCR107W');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [304968.5,305777.5] to [-12500,-12500].  Width 300, indent 400, length 809
fill([304968.50,305377.50,305777.50,305377.50,304968.50,304968.50], ...
	[-12800.00,-12800.00,-12500.00,-12200.00,-12200.00,-12800.00], 'm-');
%% Text at position 305372.5,-12200:  TyElmt_6 hits at 69%
h = text(305372.5, -12200.0, 'TyElmt_6 hits at 69%');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [314177.5,314738.5] to [-12500,-12500].  Width 300, indent 400, length 561
fill([314177.50,314338.50,314738.50,314338.50,314177.50,314177.50], ...
	[-12800.00,-12800.00,-12500.00,-12200.00,-12200.00,-12800.00], 'm-');
%% Text at position 314457.5,-12200:  TyElmt_6 hits at 71%
h = text(314457.5, -12200.0, 'TyElmt_6 hits at 71%');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% Plotting the boundaries for Smik contig1239
plot([293634,302029],[-17500,-17500],'k-');
plot([293634,293634],[-17000,-18000],'k-');
plot([302029,302029],[-17000,-18000],'k-');
%% Text at position 302029,-17800:  Smik contig1239
h = text(302029.0, -17800.0, 'Smik contig1239');
set(h,'VerticalAlignment','top')
set(h,'HorizontalAlignment','right')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
%% Hooks at the end of Smik contig1239
plot([293634,293634,293634],[-18000,-18000,-17900],'k-');
plot([302029,302876,302876],[-17000,-17000,-17100],'k-');
%% 
%% Arrow from [294713,293634] to [-17500,-17500].  Width 300, indent 400, length 1079
fill([294713.00,294034.00,293634.00,294034.00,294713.00,294713.00], ...
	[-17200.00,-17200.00,-17500.00,-17800.00,-17800.00,-17200.00], 'm-');
%% Text at position 294174,-17200:  TyElmt_322 hits at 70%
h = text(294174.0, -17200.0, 'TyElmt_322 hits at 70%');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [293967,293758] to [-17500,-17500].  Width 300, indent 188.1, length 209
fill([293967.00,293946.10,293758.00,293946.10,293967.00,293967.00], ...
	[-17200.00,-17200.00,-17500.00,-17800.00,-17800.00,-17200.00], 'g-');
%% Text at position 293863,-17200:  YER138W-A
h = text(293863.0, -17200.0, 'YER138W-A');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [297327,295771] to [-17500,-17500].  Width 300, indent 400, length 1556
fill([297327.00,296171.00,295771.00,296171.00,297327.00,297327.00], ...
	[-17200.00,-17200.00,-17500.00,-17800.00,-17800.00,-17200.00], 'r-');
%% Text at position 296549,-17200:  
h = text(296549.0, -17200.0, '');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [300913,300668] to [-17500,-17500].  Width 300, indent 220.5, length 245
fill([300913.00,300888.50,300668.00,300888.50,300913.00,300913.00], ...
	[-17200.00,-17200.00,-17500.00,-17800.00,-17800.00,-17200.00], 'g-');
%% Text at position 300791,-17200:  YNR065C
h = text(300791.0, -17200.0, 'YNR065C');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% Plotting the boundaries for Sbay contig206
plot([280000,302096],[-22500,-22500],'k-');
plot([280000,280000],[-22000,-23000],'k-');
plot([302096,302096],[-22000,-23000],'k-');
%% Text at position 302096,-22800:  Sbay contig206
h = text(302096.0, -22800.0, 'Sbay contig206');
set(h,'VerticalAlignment','top')
set(h,'HorizontalAlignment','right')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
%% Hooks at the end of Sbay contig206
plot([280000,279645,279645],[-23000,-23000,-22900],'k-');
plot([302096,303400,303400],[-22000,-22000,-22100],'k-');
%% 
%% Arrow from [287421,288722] to [-22500,-22500].  Width 300, indent 400, length 1301
fill([287421.00,288322.00,288722.00,288322.00,287421.00,287421.00], ...
	[-22800.00,-22800.00,-22500.00,-22200.00,-22200.00,-22800.00], 'r-');
%% Text at position 288071,-22200:  YNL330C
h = text(288071.0, -22200.0, 'YNL330C');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [290387,291517] to [-22500,-22500].  Width 300, indent 400, length 1130
fill([290387.00,291117.00,291517.00,291117.00,290387.00,290387.00], ...
	[-22800.00,-22800.00,-22500.00,-22200.00,-22200.00,-22800.00], 'r-');
%% Text at position 290952,-22200:  YNL331C
h = text(290952.0, -22200.0, 'YNL331C');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [293271,292960] to [-22500,-22500].  Width 300, indent 279.9, length 311
fill([293271.00,293239.90,292960.00,293239.90,293271.00,293271.00], ...
	[-22200.00,-22200.00,-22500.00,-22800.00,-22800.00,-22200.00], 'w-');
%% Text at position 293115,-22200:  NoHit19577
h = text(293115.0, -22200.0, 'NoHit19577');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [293574,293416] to [-22500,-22500].  Width 300, indent 142.2, length 158
fill([293574.00,293558.20,293416.00,293558.20,293574.00,293574.00], ...
	[-22200.00,-22200.00,-22500.00,-22800.00,-22800.00,-22200.00], 'b-');
%% Text at position 293495,-22200:  YNL336W
h = text(293495.0, -22200.0, 'YNL336W');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [294116,293853] to [-22500,-22500].  Width 300, indent 236.7, length 263
fill([294116.00,294089.70,293853.00,294089.70,294116.00,294116.00], ...
	[-22200.00,-22200.00,-22500.00,-22800.00,-22800.00,-22200.00], 'b-');
%% Text at position 293984,-22200:  YNL336W
h = text(293984.0, -22200.0, 'YNL336W');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [297327,295771] to [-22500,-22500].  Width 300, indent 400, length 1556
fill([297327.00,296171.00,295771.00,296171.00,297327.00,297327.00], ...
	[-22200.00,-22200.00,-22500.00,-22800.00,-22800.00,-22200.00], 'r-');
%% Text at position 296549,-22200:  
h = text(296549.0, -22200.0, '');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [297592,297855] to [-22500,-22500].  Width 300, indent 236.7, length 263
fill([297592.00,297618.30,297855.00,297618.30,297592.00,297592.00], ...
	[-22800.00,-22800.00,-22500.00,-22200.00,-22200.00,-22800.00], 'w-');
%% Text at position 297723,-22200:  NoHit19589
h = text(297723.0, -22200.0, 'NoHit19589');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [301947,301516] to [-22500,-22500].  Width 300, indent 387.9, length 431
fill([301947.00,301903.90,301516.00,301903.90,301947.00,301947.00], ...
	[-22200.00,-22200.00,-22500.00,-22800.00,-22800.00,-22200.00], 'g-');
%% Text at position 301731,-22200:  YIR039C
h = text(301731.0, -22200.0, 'YIR039C');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [294464,294982] to [-22500,-22500].  Width 300, indent 400, length 518
fill([294464.00,294582.00,294982.00,294582.00,294464.00,294464.00], ...
	[-22800.00,-22800.00,-22500.00,-22200.00,-22200.00,-22800.00], 'm-');
%% Text at position 294723,-22200:  TyElmt_8 hits at 55%
h = text(294723.0, -22200.0, 'TyElmt_8 hits at 55%');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% Plotting the boundaries for Sbay contig921
plot([299552,300464],[-25000,-25000],'k-');
plot([299552,299552],[-24500,-25500],'k-');
plot([300464,300464],[-24500,-25500],'k-');
%% Text at position 300464,-25300:  Sbay contig921
h = text(300464.0, -25300.0, 'Sbay contig921');
set(h,'VerticalAlignment','top')
set(h,'HorizontalAlignment','right')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
%% Hooks at the end of Sbay contig921
plot([299552,299552,299552],[-25500,-25500,-25400],'k-');
plot([300464,300464,300464],[-24500,-24500,-24600],'k-');
%% 
%% Arrow from [300453,299554] to [-25000,-25000].  Width 300, indent 400, length 899
fill([300453.00,299954.00,299554.00,299954.00,300453.00,300453.00], ...
	[-24700.00,-24700.00,-25000.00,-25300.00,-25300.00,-24700.00], 'r-');
%% Text at position 300004,-24700:  
h = text(300004.0, -24700.0, '');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% Plotting the boundaries for Sbay contig223
plot([305996,324155],[-27500,-27500],'k-');
plot([305996,305996],[-27000,-28000],'k-');
plot([324155,324155],[-27000,-28000],'k-');
%% Text at position 324155,-27800:  Sbay contig223
h = text(324155.0, -27800.0, 'Sbay contig223');
set(h,'VerticalAlignment','top')
set(h,'HorizontalAlignment','right')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
%% Hooks at the end of Sbay contig223
plot([305996,306014,306014],[-28000,-28000,-27900],'k-');
plot([324155,324385,324385],[-27000,-27000,-27100],'k-');
%% 
%% Arrow from [306519,305998] to [-27500,-27500].  Width 300, indent 400, length 521
fill([306519.00,306398.00,305998.00,306398.00,306519.00,306519.00], ...
	[-27200.00,-27200.00,-27500.00,-27800.00,-27800.00,-27200.00], 'b-');
%% Text at position 306259,-27200:  YHR207C
h = text(306259.0, -27200.0, 'YHR207C');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [307611,308792] to [-27500,-27500].  Width 300, indent 400, length 1181
fill([307611.00,308392.00,308792.00,308392.00,307611.00,307611.00], ...
	[-27800.00,-27800.00,-27500.00,-27200.00,-27200.00,-27800.00], 'r-');
%% Text at position 308202,-27200:  YHR208W
h = text(308202.0, -27200.0, 'YHR208W');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [309677,312292] to [-27500,-27500].  Width 300, indent 400, length 2615
fill([309677.00,311892.00,312292.00,311892.00,309677.00,309677.00], ...
	[-27800.00,-27800.00,-27500.00,-27200.00,-27200.00,-27800.00], 'r-');
%% Text at position 310985,-27200:  
h = text(310985.0, -27200.0, '');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [313047,313925] to [-27500,-27500].  Width 300, indent 400, length 878
fill([313047.00,313525.00,313925.00,313525.00,313047.00,313047.00], ...
	[-27800.00,-27800.00,-27500.00,-27200.00,-27200.00,-27800.00], 'r-');
%% Text at position 313486,-27200:  YHR209W
h = text(313486.0, -27200.0, 'YHR209W');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [315442,317376] to [-27500,-27500].  Width 300, indent 400, length 1934
fill([315442.00,316976.00,317376.00,316976.00,315442.00,315442.00], ...
	[-27800.00,-27800.00,-27500.00,-27200.00,-27200.00,-27800.00], 'r-');
%% Text at position 316409,-27200:  YOL164W
h = text(316409.0, -27200.0, 'YOL164W');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [319908,318241] to [-27500,-27500].  Width 300, indent 400, length 1667
fill([319908.00,318641.00,318241.00,318641.00,319908.00,319908.00], ...
	[-27200.00,-27200.00,-27500.00,-27800.00,-27800.00,-27200.00], 'b-');
%% Text at position 319075,-27200:  YOL163W
h = text(319075.0, -27200.0, 'YOL163W');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [320253,320450] to [-27500,-27500].  Width 300, indent 177.3, length 197
fill([320253.00,320272.70,320450.00,320272.70,320253.00,320253.00], ...
	[-27800.00,-27800.00,-27500.00,-27200.00,-27200.00,-27800.00], 'w-');
%% Text at position 320352,-27200:  NoHit10726
h = text(320352.0, -27200.0, 'NoHit10726');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% 
%% Plot x_dashed vs. y_dashed
%% 
%% 
%% Seting variable x_dashed.  4 values, [min,avg,max]=[296662.5..297160.875..297327]
x_dashed = [...
	297327,296662.5,297327,297327];
%% Seting variable y_dashed.  4 values, [min,avg,max]=[-22500..-13750..-5000]
y_dashed = [...
	-5000,-10000,-17500,-22500];
plot(x_dashed, y_dashed, 'k.:')
%% 
%% 
%% Plot x_dashed vs. y_dashed
%% 
%% 
%% Seting variable x_dashed.  4 values, [min,avg,max]=[295106.5..295604.875..295771]
x_dashed = [...
	295771,295106.5,295771,295771];
%% Seting variable y_dashed.  4 values, [min,avg,max]=[-22500..-13750..-5000]
y_dashed = [...
	-5000,-10000,-17500,-22500];
plot(x_dashed, y_dashed, 'k.:')
%% 
%% 
%% Plot x_dashed vs. y_dashed
%% 
%% 
%% Seting variable x_dashed.  2 values, [min,avg,max]=[300021..300237..300453]
x_dashed = [...
	300021,300453];
%% Seting variable y_dashed.  2 values, [min,avg,max]=[-25000..-15000..-5000]
y_dashed = [...
	-5000,-25000];
plot(x_dashed, y_dashed, 'k.:')
%% 
%% 
%% Plot x_dashed vs. y_dashed
%% 
%% 
%% Seting variable x_dashed.  2 values, [min,avg,max]=[299554..299554..299554]
x_dashed = [...
	299554,299554];
%% Seting variable y_dashed.  2 values, [min,avg,max]=[-25000..-15000..-5000]
y_dashed = [...
	-5000,-25000];
plot(x_dashed, y_dashed, 'k.:')
%% 
%% 
%% Plot x_dashed vs. y_dashed
%% 
%% 
%% Seting variable x_dashed.  2 values, [min,avg,max]=[306468.5..306493.75..306519]
x_dashed = [...
	306519,306468.5];
%% Seting variable y_dashed.  2 values, [min,avg,max]=[-12500..-8750..-5000]
y_dashed = [...
	-5000,-12500];
plot(x_dashed, y_dashed, 'k.:')
%% 
%% 
%% Plot x_dashed vs. y_dashed
%% 
%% 
%% Seting variable x_dashed.  2 values, [min,avg,max]=[306842.5..306867.75..306893]
x_dashed = [...
	306893,306842.5];
%% Seting variable y_dashed.  2 values, [min,avg,max]=[-12500..-8750..-5000]
y_dashed = [...
	-5000,-12500];
plot(x_dashed, y_dashed, 'k.:')
%% 
%% 
%% Plot x_dashed vs. y_dashed
%% 
%% 
%% Seting variable x_dashed.  3 values, [min,avg,max]=[309677..309703.166667..309755.5]
x_dashed = [...
	  309677,309755.5,  309677];
%% Seting variable y_dashed.  3 values, [min,avg,max]=[-27500..-15000..-5000]
y_dashed = [...
	-5000,-12500,-27500];
plot(x_dashed, y_dashed, 'k.:')
%% 
%% 
%% Plot x_dashed vs. y_dashed
%% 
%% 
%% Seting variable x_dashed.  3 values, [min,avg,max]=[312175..312239.166667..312292]
x_dashed = [...
	312175,312250.5,312292];
%% Seting variable y_dashed.  3 values, [min,avg,max]=[-27500..-15000..-5000]
y_dashed = [...
	-5000,-12500,-27500];
plot(x_dashed, y_dashed, 'k.:')
%% 
%% 
%% Plot x_dashed vs. y_dashed
%% 
%% 
%% Seting variable x_dashed.  2 values, [min,avg,max]=[300943..301942.75..302942.5]
x_dashed = [...
	  300943,302942.5];
%% Seting variable y_dashed.  2 values, [min,avg,max]=[-10000..-7500..-5000]
y_dashed = [...
	-5000,-10000];
plot(x_dashed, y_dashed, 'k.:')
%% 
%% 
%% Plot x_dashed vs. y_dashed
%% 
%% 
%% Seting variable x_dashed.  2 values, [min,avg,max]=[299993..300325.25..300657.5]
x_dashed = [...
	  299993,300657.5];
%% Seting variable y_dashed.  2 values, [min,avg,max]=[-10000..-7500..-5000]
y_dashed = [...
	-5000,-10000];
plot(x_dashed, y_dashed, 'k.:')
%% 
%% 
%% Plot x_dashed vs. y_dashed
%% 
%% 
%% Seting variable x_dashed.  2 values, [min,avg,max]=[312609..312634.25..312659.5]
x_dashed = [...
	  312609,312659.5];
%% Seting variable y_dashed.  2 values, [min,avg,max]=[-12500..-8750..-5000]
y_dashed = [...
	-5000,-12500];
plot(x_dashed, y_dashed, 'k.:')
%% 
%% 
%% Plot x_dashed vs. y_dashed
%% 
%% 
%% Seting variable x_dashed.  2 values, [min,avg,max]=[313645.5..313672.75..313700]
x_dashed = [...
	313700,313645.5];
%% Seting variable y_dashed.  2 values, [min,avg,max]=[-12500..-8750..-5000]
y_dashed = [...
	-5000,-12500];
plot(x_dashed, y_dashed, 'k.:')
%% 
%% 
%% Plot x_dashed vs. y_dashed
%% 
%% 
%% Seting variable x_dashed.  2 values, [min,avg,max]=[307720.5..307754.75..307789]
x_dashed = [...
	307789,307720.5];
%% Seting variable y_dashed.  2 values, [min,avg,max]=[-12500..-8750..-5000]
y_dashed = [...
	-5000,-12500];
plot(x_dashed, y_dashed, 'k.:')
%% 
%% 
%% Plot x_dashed vs. y_dashed
%% 
%% 
%% Seting variable x_dashed.  2 values, [min,avg,max]=[308805.5..308839.75..308874]
x_dashed = [...
	308874,308805.5];
%% Seting variable y_dashed.  2 values, [min,avg,max]=[-12500..-8750..-5000]
y_dashed = [...
	-5000,-12500];
plot(x_dashed, y_dashed, 'k.:')
ax = axis;
axis([ax(1),ax(2),ax(3),0]);
h = gcf;
h2 = get(h,'CurrentAxes');
set(h2,'YAxisLocation','right');
title('Scer ChrIII tile 7 positions 300kbp to 315kbp aligned against Spar Smik Sbay');
