clear; clf; 
hold on;
%% Plotting the boundaries for Scer chr1
plot([195000,235203],[-5000,-5000],'k-');
plot([195000,195000],[-4500,-5500],'k-');
plot([235203,235203],[-4500,-5500],'k-');
%% Text at position 235203,-5300:  Scer chr1
h = text(235203.0, -5300.0, 'Scer chr1');
set(h,'VerticalAlignment','top')
set(h,'HorizontalAlignment','right')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
%% Hooks at the end of Scer chr1
plot([195000,195000,195000],[-5500,-5500,-5400],'k-');
plot([235203,235203,235203],[-4500,-4500,-4600],'k-');
%% 
%% Arrow from [193595,196174] to [-5000,-5000].  Width 300, indent 400, length 2579
fill([193595.00,195774.00,196174.00,195774.00,193595.00,193595.00], ...
	[-5300.00,-5300.00,-5000.00,-4700.00,-4700.00,-5300.00], 'b-');
%% Text at position 194884,-4700:  YAR044W (OSH1)
h = text(194884.0, -4700.0, 'YAR044W (OSH1)');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [201775,201455] to [-5000,-5000].  Width 300, indent 288.0, length 320
fill([201775.00,201743.00,201455.00,201743.00,201775.00,201775.00], ...
	[-4700.00,-4700.00,-5000.00,-5300.00,-5300.00,-4700.00], 'w-');
%% Text at position 201615,-4700:  YAR047C
h = text(201615.0, -4700.0, 'YAR047C');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [203389,208002] to [-5000,-5000].  Width 300, indent 400, length 4613
fill([203389.00,207602.00,208002.00,207602.00,203389.00,203389.00], ...
	[-5300.00,-5300.00,-5000.00,-4700.00,-4700.00,-5300.00], 'b-');
%% Text at position 205695,-4700:  YAR050W (FLO1)
h = text(205695.0, -4700.0, 'YAR050W (FLO1)');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [208353,208649] to [-5000,-5000].  Width 300, indent 266.4, length 296
fill([208353.00,208382.60,208649.00,208382.60,208353.00,208353.00], ...
	[-5300.00,-5300.00,-5000.00,-4700.00,-4700.00,-5300.00], 'w-');
%% Text at position 208501,-4700:  YAR053W
h = text(208501.0, -4700.0, 'YAR053W');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [209764,209434] to [-5000,-5000].  Width 300, indent 297.0, length 330
fill([209764.00,209731.00,209434.00,209731.00,209764.00,209764.00], ...
	[-4700.00,-4700.00,-5000.00,-5300.00,-5300.00,-4700.00], 'm-');
%% Text at position 209599,-4700:  YARCDELTA8
h = text(209599.0, -4700.0, 'YARCDELTA8');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [217478,217143] to [-5000,-5000].  Width 300, indent 301.5, length 335
fill([217478.00,217444.50,217143.00,217444.50,217478.00,217478.00], ...
	[-4700.00,-4700.00,-5000.00,-5300.00,-5300.00,-4700.00], 'w-');
%% Text at position 217310,-4700:  YAR060C
h = text(217310.0, -4700.0, 'YAR060C');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [218126,218329] to [-5000,-5000].  Width 300, indent 182.7, length 203
fill([218126.00,218146.30,218329.00,218146.30,218126.00,218126.00], ...
	[-5300.00,-5300.00,-5000.00,-4700.00,-4700.00,-5300.00], 'b-');
%% Text at position 218227,-4700:  YAR061W
h = text(218227.0, -4700.0, 'YAR061W');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [218535,219131] to [-5000,-5000].  Width 300, indent 400, length 596
fill([218535.00,218731.00,219131.00,218731.00,218535.00,218535.00], ...
	[-5300.00,-5300.00,-5000.00,-4700.00,-4700.00,-5300.00], 'b-');
%% Text at position 218833,-4700:  YAR062W
h = text(218833.0, -4700.0, 'YAR062W');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [220184,220483] to [-5000,-5000].  Width 300, indent 269.1, length 299
fill([220184.00,220213.90,220483.00,220213.90,220184.00,220184.00], ...
	[-5300.00,-5300.00,-5000.00,-4700.00,-4700.00,-5300.00], 'w-');
%% Text at position 220333,-4700:  YAR064W
h = text(220333.0, -4700.0, 'YAR064W');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [221035,221646] to [-5000,-5000].  Width 300, indent 400, length 611
fill([221035.00,221246.00,221646.00,221246.00,221035.00,221035.00], ...
	[-5300.00,-5300.00,-5000.00,-4700.00,-4700.00,-5300.00], 'b-');
%% Text at position 221340,-4700:  YAR066W
h = text(221340.0, -4700.0, 'YAR066W');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [222392,222877] to [-5000,-5000].  Width 300, indent 400, length 485
fill([222392.00,222477.00,222877.00,222477.00,222392.00,222392.00], ...
	[-5300.00,-5300.00,-5000.00,-4700.00,-4700.00,-5300.00], 'b-');
%% Text at position 222634,-4700:  YAR068W
h = text(222634.0, -4700.0, 'YAR068W');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [224290,223997] to [-5000,-5000].  Width 300, indent 263.7, length 293
fill([224290.00,224260.70,223997.00,224260.70,224290.00,224290.00], ...
	[-4700.00,-4700.00,-5000.00,-5300.00,-5300.00,-4700.00], 'w-');
%% Text at position 224143,-4700:  YAR069C
h = text(224143.0, -4700.0, 'YAR069C');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [224848,224549] to [-5000,-5000].  Width 300, indent 269.1, length 299
fill([224848.00,224818.10,224549.00,224818.10,224848.00,224848.00], ...
	[-4700.00,-4700.00,-5000.00,-5300.00,-5300.00,-4700.00], 'w-');
%% Text at position 224698,-4700:  YAR070C
h = text(224698.0, -4700.0, 'YAR070C');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [225446,226849] to [-5000,-5000].  Width 300, indent 400, length 1403
fill([225446.00,226449.00,226849.00,226449.00,225446.00,225446.00], ...
	[-5300.00,-5300.00,-5000.00,-4700.00,-4700.00,-5300.00], 'b-');
%% Text at position 226147,-4700:  YAR071W (PHO11)
h = text(226147.0, -4700.0, 'YAR071W (PHO11)');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [227728,228939] to [-5000,-5000].  Width 300, indent 400, length 1211
fill([227728.00,228539.00,228939.00,228539.00,227728.00,227728.00], ...
	[-5300.00,-5300.00,-5000.00,-4700.00,-4700.00,-5300.00], 'b-');
%% Text at position 228333,-4700:  YAR073W
h = text(228333.0, -4700.0, 'YAR073W');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
%% 
%% Arrow from [228830,229303] to [-5000,-5000].  Width 300, indent 400, length 473
fill([228830.00,228903.00,229303.00,228903.00,228830.00,228830.00], ...
	[-5300.00,-5300.00,-5000.00,-4700.00,-4700.00,-5300.00], 'y-');
%% Text at position 229066,-4700:  YAR075W
h = text(229066.0, -4700.0, 'YAR075W');
set(h,'VerticalAlignment','middle')
set(h,'HorizontalAlignment','left')
set(h,'Interpreter','none')
set(h,'FontName','Times')
set(h,'FontSize',8)
set(h,'Rotation',90)
ax = axis;
axis([ax(1),ax(2),ax(3),0]);
h = gcf;
h2 = get(h,'CurrentAxes');
set(h2,'YAxisLocation','right');
title('Scer ChrI tile 5 positions 200kbp to 230kbp aligned against Spar Smik Sbay');
