CHR	SNP	BP	FULL_MODEL_BETA	FULL_MODEL_P	A1	A2	MAF	NMISS	SEVERITY_SCORE_ONLY_BETA	SEVERITY_SCORE_ONLY_P	FILTER
5	rs76801383	157024450	NA	NA	G	A	0	374	NA	NA	GATK_PASS
5	rs115991082	157024519	NA	NA	T	C	0	374	NA	NA	GATK_PASS
5	rs370185341	157024537	NA	NA	G	GATTA	0	374	NA	NA	GATK_FAIL
5	.	157024571	NA	NA	G	C	0.001337	374	-0.6247	0.4737	GATK_PASS
5	rs138513825	157024572	NA	NA	G	A	0	374	NA	NA	GATK_PASS
5	rs116300988	157024584	NA	NA	G	A	0.004011	374	0.04403	0.9305	GATK_PASS
5	.	157024616	NA	NA	G	A	0.001337	374	0.378	0.6647	GATK_PASS
5	.	157024663	NA	NA	T	C	0	374	NA	NA	GATK_PASS
5	rs367597949	157024730	NA	NA	A	G	0.001337	374	0.378	0.6647	GATK_PASS
5	.	157024738	NA	NA	A	C	0	374	NA	NA	GATK_PASS
5	rs114983803	157024753	NA	NA	C	T	0	374	NA	NA	GATK_PASS
5	.	157024792	NA	NA	T	C	0	374	NA	NA	GATK_PASS
5	.	157024887	NA	NA	A	G	0	374	NA	NA	GATK_PASS
5	.	157024968	NA	NA	A	C	0	374	NA	NA	GATK_PASS
5	.	157024996	NA	NA	A	G	0	374	NA	NA	GATK_PASS
5	.	157025136	NA	NA	T	C	0	374	NA	NA	GATK_PASS
5	rs145278464	157025185	NA	NA	C	T	0	374	NA	NA	GATK_PASS
5	rs12520039	157025220	NA	NA	G	A	0.006684	374	0.3821	0.3296	GATK_PASS
5	rs117033847	157025306	NA	NA	T	C	0	374	NA	NA	GATK_PASS
5	.	157025385	NA	NA	A	T	0	374	NA	NA	GATK_PASS
5	rs185094648	157025427	NA	NA	T	C	0	374	NA	NA	GATK_PASS
5	rs116035487	157025484	NA	NA	T	C	0	374	NA	NA	GATK_PASS
5	rs34659533	157025491	NA	NA	A	G	0.006684	374	0.3821	0.3296	GATK_PASS
5	.	157025503	NA	NA	A	G	0	374	NA	NA	GATK_PASS
5	rs35707862	157025577	NA	NA	A	G	0.006684	374	0.3821	0.3296	GATK_PASS
5	rs189976796	157025623	NA	NA	A	T	0	374	NA	NA	GATK_PASS
5	rs374492511	157025633	NA	NA	G	A	0	374	NA	NA	GATK_PASS
5	rs35242034	157025733	0.03462	0.6373	T	C	0.365	374	0.005634	0.934	GATK_PASS
5	.	157025806	NA	NA	T	C	0.001337	374	-0.6247	0.4737	GATK_PASS
5	rs75502805	157025875	NA	NA	C	T	0	374	NA	NA	GATK_PASS
5	rs61416781	157026002	NA	NA	A	G	0	374	NA	NA	GATK_PASS
5	.	157026003	NA	NA	C	A	0	374	NA	NA	GATK_PASS
5	rs377192754	157026064	NA	NA	C	T	0	374	NA	NA	GATK_PASS
5	.	157026103	NA	NA	G	A	0.001337	374	-0.6247	0.4737	GATK_PASS
5	rs113196872	157026178	NA	NA	C	T	0	374	NA	NA	GATK_PASS
5	.	157026227	NA	NA	C	T	0	374	NA	NA	GATK_PASS
5	rs57503833	157026335	NA	NA	G	A	0	374	NA	NA	GATK_PASS
5	.	157026428	NA	NA	G	T	0	374	NA	NA	GATK_PASS
5	rs186299506	157026450	NA	NA	A	G	0	374	NA	NA	GATK_PASS
5	rs150636055	157026515	NA	NA	A	G	0	374	NA	NA	GATK_PASS
5	rs73300722	157026734	NA	NA	T	C	0	374	NA	NA	GATK_PASS
5	.	157026772	NA	NA	C	T	0	374	NA	NA	GATK_PASS
5	.	157026777	NA	NA	T	C	0	374	NA	NA	GATK_PASS
5	.	157026933	NA	NA	G	A	0	374	NA	NA	GATK_PASS
5	rs76197199	157027075	NA	NA	C	T	0	374	NA	NA	GATK_PASS
5	rs144609652	157027108	NA	NA	A	G	0.006684	374	-0.02331	0.9526	GATK_PASS
5	rs113267700	157027169	NA	NA	C	CA	0	374	NA	NA	GATK_PASS
5	rs35711263	157027211	NA	NA	G	A	0.006684	374	0.3821	0.3296	GATK_PASS
5	.	157027213	NA	NA	G	A	0	374	NA	NA	GATK_PASS
5	rs147469761	157027280	NA	NA	T	A	0	374	NA	NA	GATK_PASS
5	rs140142672	157027509	NA	NA	C	T	0.004011	374	0.04403	0.9305	GATK_PASS
5	rs150063787	157027536	NA	NA	C	G	0	374	NA	NA	GATK_PASS
5	.	157027572	NA	NA	G	T	0.001337	374	1.381	0.1128	GATK_PASS
5	rs35064925	157027589	NA	NA	A	G	0.006684	374	0.3821	0.3296	GATK_PASS
5	.	157027670	NA	NA	T	C	0	374	NA	NA	GATK_PASS
5	.	157027812	NA	NA	AAAAAAC	A	0.001337	374	0.378	0.6647	GATK_PASS
5	rs145311462	157027869	NA	NA	C	G	0	374	NA	NA	GATK_PASS
5	rs77341306	157027993	NA	NA	A	C	0	374	NA	NA	GATK_PASS
5	rs4235718	157028069	-0.09557	0.3049	G	T	0.2634	374	-0.06181	0.3988	GATK_PASS
5	rs112332029	157028092	NA	NA	T	C	0	374	NA	NA	GATK_PASS
5	rs6866758	157028101	0.1695	0.1525	T	C	0.2166	374	0.00897	0.9102	GATK_PASS
5	rs2055429	157028102	0.09616	0.4898	C	G	0.1497	374	0.09369	0.2855	GATK_PASS
5	.	157028116	NA	NA	A	C	0.001337	374	-0.6247	0.4737	GATK_FAIL
5	.	157028118	NA	NA	C	T	0	374	NA	NA	GATK_PASS
5	.	157028136	NA	NA	T	C	0	374	NA	NA	GATK_PASS
5	.	157028173	NA	NA	T	G	0.006684	374	-0.4287	0.2739	GATK_FAIL
5	.	157028181	NA	NA	T	G	0.006684	374	-0.226	0.5643	GATK_FAIL
5	.	157028195	NA	NA	G	T	0	374	NA	NA	GATK_PASS
5	.	157028214	NA	NA	G	T	0	374	NA	NA	GATK_PASS
5	.	157028235	NA	NA	C	A	0	372	NA	NA	GATK_PASS
5	.	157028239	NA	NA	T	G	0.01613	372	0.1306	0.6101	GATK_FAIL
5	rs35286571;rs34189817;rs67991837;rs150793402	157028240	0.009107	0.8989	TA	T	0.3676	374	-0.01969	0.769	GATK_PASS
5	rs35286571;rs34189817;rs67991837;rs150793402	157028240	NA	NA	TAA	T	0.005348	374	0.3811	0.3839	GATK_PASS
5	rs35286571;rs34189817;rs67991837;rs150793402	157028240	0.08508	0.5234	T	TA	0.1765	374	-0.03012	0.72	GATK_PASS
5	rs35286571;rs34189817;rs67991837;rs150793402	157028240	NA	NA	T	TAA	0.009358	374	0.3842	0.2472	GATK_PASS
5	rs35286571;rs34189817;rs67991837;rs150793402	157028240	NA	NA	T	TAAA	0.02807	374	0.1976	0.3121	GATK_PASS
5	rs35286571;rs34189817;rs67991837;rs150793402	157028240	NA	NA	T	TAAAAAAAAAAAA	0.005348	374	-0.1243	0.7764	GATK_PASS
5	.	157028259	NA	NA	A	AAT	0	374	NA	NA	GATK_PASS
5	rs149197350	157028271	NA	NA	A	G	0	374	NA	NA	GATK_FAIL
5	rs70984425	157028316	NA	NA	CT	C	0.008021	374	0.2138	0.5509	GATK_PASS
5	rs70984425	157028316	NA	NA	C	CT	0	374	NA	NA	GATK_PASS
5	rs7727399	157028360	NA	NA	C	A	0.006684	374	0.3821	0.3296	GATK_PASS
5	.	157028377	NA	NA	A	G	0	374	NA	NA	GATK_PASS
5	.	157028399	NA	NA	T	C	0	374	NA	NA	GATK_PASS
5	rs183774647	157028444	NA	NA	A	G	0	374	NA	NA	GATK_PASS
5	.	157028458	NA	NA	A	G	0	374	NA	NA	GATK_PASS
5	.	157028597	NA	NA	C	CT	0.002674	374	-0.6263	0.3101	GATK_PASS
5	rs187866354	157028620	NA	NA	G	A	0	374	NA	NA	GATK_PASS
5	.	157028716	NA	NA	G	A	0	374	NA	NA	GATK_PASS
5	.	157028887	NA	NA	T	C	0.004011	374	-0.292	0.563	GATK_PASS
5	.	157028902	NA	NA	T	C	0.001337	374	-0.6247	0.4737	GATK_PASS
5	.	157028903	NA	NA	A	G	0	374	NA	NA	GATK_PASS
5	rs183485831	157028921	NA	NA	T	C	0	374	NA	NA	GATK_PASS
5	.	157028945	NA	NA	T	C	0	374	NA	NA	GATK_PASS
5	.	157028959	NA	NA	T	C	0	374	NA	NA	GATK_PASS
5	rs61045854;rs71285042	157028997	NA	NA	A	C	0.001337	374	1.381	0.1128	GATK_PASS
5	rs61045854;rs71285042	157028997	0.04503	0.8369	CA	C	0.1136	374	0.1363	0.1786	GATK_PASS
5	rs61045854;rs71285042	157028997	NA	NA	CAA	C	0.001337	374	-0.6247	0.4737	GATK_PASS
5	rs61045854;rs71285042	157028997	NA	NA	C	CA	0.001337	374	-0.6247	0.4737	GATK_PASS
5	.	157029026	NA	NA	C	T	0	374	NA	NA	GATK_PASS
5	.	157029041	NA	NA	T	C	0	374	NA	NA	GATK_PASS
5	rs191468302	157029055	NA	NA	A	C	0	374	NA	NA	GATK_PASS
5	.	157029061	NA	NA	A	G	0	374	NA	NA	GATK_PASS
5	rs146689886	157029067	NA	NA	G	A	0	374	NA	NA	GATK_PASS
5	rs77817643	157029203	NA	NA	A	C	0.004011	374	0.04403	0.9305	GATK_PASS
5	.	157029219	NA	NA	A	AC	0	374	NA	NA	GATK_PASS
5	.	157029254	NA	NA	C	T	0	374	NA	NA	GATK_PASS
5	.	157029301	NA	NA	C	G	0.002674	374	-0.6263	0.3101	GATK_PASS
5	rs368051054	157029424	NA	NA	G	GT	0	374	NA	NA	GATK_PASS
5	.	157029524	NA	NA	C	T	0	374	NA	NA	GATK_PASS
5	.	157029537	NA	NA	T	C	0	374	NA	NA	GATK_PASS
5	.	157029563	NA	NA	T	C	0	374	NA	NA	GATK_PASS
5	.	157029574	NA	NA	C	G	0	374	NA	NA	GATK_PASS
5	.	157029596	NA	NA	C	T	0	374	NA	NA	GATK_PASS
5	.	157029662	NA	NA	A	G	0.001337	374	-0.6247	0.4737	GATK_PASS
5	rs145237072	157029698	NA	NA	T	C	0	374	NA	NA	GATK_PASS
5	rs137884244	157029704	NA	NA	T	C	0.008021	374	-0.2944	0.4113	GATK_PASS
5	rs111759551	157029720	NA	NA	T	G	0	374	NA	NA	GATK_PASS
5	rs201441165	157029778	NA	NA	C	T	0.002674	374	0.6903	0.1128	GATK_PASS
5	rs7716614	157029851	NA	NA	T	G	0.006684	374	0.3821	0.3296	GATK_PASS
5	rs76133899	157029891	NA	NA	G	C	0	374	NA	NA	GATK_PASS
5	.	157029945	NA	NA	T	C	0	374	NA	NA	GATK_PASS
5	rs2134230	157029946	0.2583	0.01645	C	G	0.2179	374	0.05122	0.5091	GATK_PASS
5	.	157030093	NA	NA	A	G	0.001337	374	-0.6247	0.4737	GATK_PASS
5	.	157030106	NA	NA	G	T	0	374	NA	NA	GATK_PASS
5	rs138665140	157030147	NA	NA	G	A	0	374	NA	NA	GATK_PASS
5	rs181318250	157030233	NA	NA	C	T	0	374	NA	NA	GATK_PASS
5	.	157030248	NA	NA	T	TAG	0.001337	374	-0.6247	0.4737	GATK_FAIL
5	rs72805147	157030317	-0.3521	0.4137	G	A	0.01872	374	-0.3697	0.09432	GATK_PASS
5	.	157030333	NA	NA	C	T	0.001337	374	-0.6247	0.4737	GATK_PASS
5	rs73813940	157030341	NA	NA	A	T	0	374	NA	NA	GATK_PASS
5	.	157030413	NA	NA	G	C	0	374	NA	NA	GATK_PASS
5	.	157030477	NA	NA	A	C	0	374	NA	NA	GATK_PASS
5	rs185871405	157030480	NA	NA	T	C	0	374	NA	NA	GATK_PASS
5	.	157030488	NA	NA	T	C	0	374	NA	NA	GATK_PASS
5	.	157030517	NA	NA	A	G	0.001337	374	-0.6247	0.4737	GATK_PASS
5	rs905212	157030561	0.0918	0.5103	A	G	0.1551	374	0.06731	0.4394	GATK_PASS
5	rs187100386	157030635	NA	NA	C	A	0	374	NA	NA	GATK_PASS
5	.	157030652	NA	NA	G	A	0	374	NA	NA	GATK_PASS
5	.	157030670	NA	NA	T	G	0.001337	374	-0.6247	0.4737	GATK_PASS
5	.	157030722	NA	NA	A	C	0	374	NA	NA	GATK_PASS
5	.	157030781	NA	NA	T	G	0	374	NA	NA	GATK_PASS
5	rs139137997	157030802	NA	NA	A	C	0.008021	374	-0.125	0.7273	GATK_PASS
5	rs34409737	157030846	-0.1735	0.07237	T	A	0.2527	374	-0.1073	0.1482	GATK_PASS
5	rs183296893	157030882	NA	NA	G	T	0	374	NA	NA	GATK_PASS
5	.	157030929	NA	NA	G	A	0	374	NA	NA	GATK_PASS
5	.	157030958	NA	NA	T	C	0.001337	374	0.378	0.6647	GATK_PASS
5	rs6555810	157030975	NA	NA	C	T	0.006684	374	0.3821	0.3296	GATK_PASS
5	rs67848014;rs71285041;rs70984426	157031008	0.08661	0.4806	G	GT	0.1805	374	0.09705	0.2373	GATK_PASS
5	rs67848014;rs71285041;rs70984426	157031008	NA	NA	GTT	G	0.01604	374	0.3034	0.2347	GATK_PASS
5	rs67848014;rs71285041;rs70984426	157031008	NA	NA	GTTT	G	0	374	NA	NA	GATK_PASS
5	rs67848014;rs71285041;rs70984426	157031008	NA	NA	G	GT	0.006684	374	0.3821	0.3296	GATK_PASS
5	rs67848014;rs71285041;rs70984426	157031008	NA	NA	G	GTT	0	374	NA	NA	GATK_PASS
5	.	157031161	NA	NA	C	T	0.001337	374	-0.6247	0.4737	GATK_PASS
5	.	157031177	NA	NA	A	C	0.001337	374	0.378	0.6647	GATK_PASS
5	rs68145045	157031185	0.03026	0.68	A	G	0.3636	374	-0.002769	0.9675	GATK_PASS
5	rs187403149	157031226	NA	NA	C	T	0	374	NA	NA	GATK_PASS
5	.	157031236	NA	NA	C	T	0	374	NA	NA	GATK_PASS
5	rs182516789	157031251	NA	NA	G	A	0.002674	374	-0.6263	0.3101	GATK_PASS
5	rs143115207	157031255	NA	NA	C	T	0.002674	374	-1.129	0.0669	GATK_PASS
5	rs6868990	157031316	NA	NA	A	T	0	374	NA	NA	GATK_PASS
5	.	157031384	NA	NA	C	T	0	374	NA	NA	GATK_PASS
5	.	157031391	NA	NA	G	T	0.001337	374	-0.6247	0.4737	GATK_PASS
5	.	157031562	NA	NA	A	G	0.001337	374	-0.6247	0.4737	GATK_PASS
5	rs139887533	157031584	NA	NA	A	G	0.01738	374	0.1515	0.5377	GATK_PASS
5	rs142960393	157031649	NA	NA	A	G	0.001337	374	-0.6247	0.4737	GATK_PASS
5	rs13162577	157031766	NA	NA	G	A	0.006684	374	0.3821	0.3296	GATK_PASS
5	.	157031779	NA	NA	T	C	0	374	NA	NA	GATK_PASS
5	rs66891108;rs57821791	157031794	NA	NA	CA	C	0	374	NA	NA	GATK_PASS
5	rs66891108;rs57821791	157031794	NA	NA	CAA	C	0	374	NA	NA	GATK_PASS
5	rs66891108;rs57821791	157031794	NA	NA	CAAA	C	0.005348	374	0.1284	0.7694	GATK_PASS
5	rs66891108;rs57821791	157031794	NA	NA	CAAAA	C	0.001337	374	1.381	0.1128	GATK_PASS
5	rs66891108;rs57821791	157031794	-0.02787	0.6748	CA	C	0.4412	374	-0.03197	0.6275	GATK_PASS
5	rs66891108;rs57821791	157031794	-0.1831	0.05374	C	CAA	0.2701	374	-0.09248	0.2103	GATK_PASS
5	.	157031795	NA	NA	C	A	0	374	NA	NA	GATK_FAIL
5	.	157031795	NA	NA	T	A	0.001337	374	-0.6247	0.4737	GATK_FAIL
5	.	157031800	NA	NA	T	A	0	374	NA	NA	GATK_PASS
5	rs61596106	157031855	NA	NA	A	G	0	374	NA	NA	GATK_PASS
5	.	157031872	NA	NA	T	C	0.001337	374	-0.6247	0.4737	GATK_PASS
5	.	157031908	NA	NA	A	C	0	374	NA	NA	GATK_PASS
5	rs72805148	157031933	-0.3504	0.4166	C	T	0.01604	374	-0.3288	0.1632	GATK_PASS
5	.	157031963	NA	NA	G	C	0.001337	374	-0.6247	0.4737	GATK_PASS
5	.	157031990	NA	NA	A	C	0.001337	374	0.378	0.6647	GATK_PASS
5	.	157032039	NA	NA	C	CTCAA	0	374	NA	NA	GATK_PASS
5	.	157032063	NA	NA	C	G	0.001337	374	-0.6247	0.4737	GATK_PASS
5	rs145292071	157032106	NA	NA	A	AC	0	374	NA	NA	GATK_PASS
5	.	157032109	NA	NA	T	A	0.001337	374	-0.6247	0.4737	GATK_PASS
5	.	157032211	NA	NA	C	T	0	374	NA	NA	GATK_PASS
5	.	157032232	NA	NA	G	A	0	374	NA	NA	GATK_PASS
5	.	157032240	NA	NA	T	C	0	374	NA	NA	GATK_PASS
5	.	157032245	NA	NA	A	G	0.001337	374	-0.6247	0.4737	GATK_PASS
5	.	157032300	NA	NA	T	C	0.001337	374	-0.6247	0.4737	GATK_PASS
5	.	157032386	NA	NA	C	CA	0	374	NA	NA	GATK_FAIL
5	.	157032388	NA	NA	C	CA	0	374	NA	NA	GATK_PASS
5	rs113062774	157032469	NA	NA	A	G	0	374	NA	NA	GATK_PASS
5	.	157032506	NA	NA	A	G	0	374	NA	NA	GATK_PASS
5	.	157032532	NA	NA	T	C	0	374	NA	NA	GATK_PASS
5	rs115637561	157032533	NA	NA	A	G	0	374	NA	NA	GATK_PASS
5	.	157032558	NA	NA	G	A	0	370	NA	NA	GATK_PASS
5	rs61047347	157032570	0.2583	0.01645	T	TC	0.2179	374	0.05122	0.5091	GATK_PASS
5	rs7732478	157032678	NA	NA	A	G	0	374	NA	NA	GATK_PASS
5	.	157032763	NA	NA	A	G	0	374	NA	NA	GATK_PASS
5	.	157032794	NA	NA	G	A	0	374	NA	NA	GATK_PASS
5	rs74607260	157032802	NA	NA	G	T	0	374	NA	NA	GATK_PASS
5	rs34670839	157032845	-0.1735	0.07237	T	C	0.2527	374	-0.1073	0.1482	GATK_PASS
5	.	157032941	NA	NA	G	C	0	374	NA	NA	GATK_PASS
5	.	157032954	NA	NA	CT	C	0.001337	374	0.378	0.6647	GATK_FAIL
5	.	157032969	NA	NA	A	G	0	374	NA	NA	GATK_PASS
5	.	157033031	NA	NA	T	TC	0.001337	374	1.381	0.1128	GATK_FAIL
5	rs2277025	157033084	0.03026	0.68	C	T	0.3636	374	-0.002769	0.9675	GATK_PASS
5	.	157033100	NA	NA	T	G	0	374	NA	NA	GATK_FAIL
5	.	157033109	NA	NA	C	T	0.001337	374	-0.6247	0.4737	GATK_PASS
5	rs3842063	157033162	NA	NA	A	T	0	374	NA	NA	GATK_PASS
5	rs3842063	157033162	0.1933	0.04915	T	TA	0.242	374	0.07561	0.3121	GATK_PASS
5	rs112837701	157033215	NA	NA	A	G	0	374	NA	NA	GATK_PASS
5	rs146860788	157033224	NA	NA	C	G	0.006684	374	-0.02331	0.9526	GATK_PASS
5	.	157033338	NA	NA	A	G	0.001337	374	-0.6247	0.4737	GATK_PASS
5	rs6880589	157033429	NA	NA	C	T	0	374	NA	NA	GATK_PASS
5	rs188779220	157033477	NA	NA	T	C	0.005348	374	-0.1243	0.7764	GATK_PASS
5	rs186143419	157033549	NA	NA	T	C	0.006684	374	-0.02331	0.9526	GATK_PASS
5	.	157033554	NA	NA	A	T	0	374	NA	NA	GATK_PASS
5	.	157033582	NA	NA	A	G	0	374	NA	NA	GATK_PASS
5	rs374833264	157033584	NA	NA	A	G	0	374	NA	NA	GATK_PASS
5	.	157033587	NA	NA	G	T	0	341	NA	NA	GATK_PASS
5	.	157033593	NA	NA	G	T	0.001389	360	-0.6156	0.477	GATK_FAIL
5	.	157033596	NA	NA	G	T	0.00142	352	-0.6154	0.4789	GATK_FAIL
5	.	157033650	NA	NA	G	A	0	374	NA	NA	GATK_PASS
5	.	157033677	NA	NA	G	A	0.001337	374	-0.6247	0.4737	GATK_PASS
5	.	157033837	NA	NA	T	C	0.001337	374	0.378	0.6647	GATK_PASS
5	rs7710042	157034007	NA	NA	T	G	0	374	NA	NA	GATK_PASS
5	.	157034100	NA	NA	A	G	0	374	NA	NA	GATK_PASS
5	.	157034121	NA	NA	A	G	0.001337	374	-0.6247	0.4737	GATK_PASS
5	rs190463639	157034145	NA	NA	T	C	0	374	NA	NA	GATK_PASS
5	.	157034147	NA	NA	A	C	0.001337	374	-0.6247	0.4737	GATK_PASS
5	.	157034152	NA	NA	G	A	0	374	NA	NA	GATK_PASS
5	.	157034188	NA	NA	C	T	0	374	NA	NA	GATK_PASS
5	rs60974422	157034246	NA	NA	A	G	0	374	NA	NA	GATK_PASS
5	rs6896306	157034265	0.2398	0.01948	G	T	0.2326	374	0.08088	0.2874	GATK_PASS
5	.	157034293	NA	NA	A	G	0	374	NA	NA	GATK_PASS
5	.	157034387	NA	NA	C	T	0	374	NA	NA	GATK_PASS
5	.	157034569	NA	NA	T	C	0	374	NA	NA	GATK_PASS
5	rs4704731	157034582	0.13	0.3749	C	G	0.1537	374	0.07533	0.3925	GATK_PASS
5	.	157034656	NA	NA	T	TAC	0	374	NA	NA	GATK_PASS
5	rs143046183	157034788	NA	NA	C	T	0	374	NA	NA	GATK_PASS
5	rs55657930	157034809	0.03191	0.6698	T	TA	0.3476	374	-0.01212	0.8589	GATK_PASS
5	rs151220417	157034821	NA	NA	A	C	0	374	NA	NA	GATK_PASS
5	.	157034867	NA	NA	T	C	0.001337	374	0.378	0.6647	GATK_PASS
5	rs4704732	157034875	-0.1796	0.0629	G	C	0.254	374	-0.1263	0.08837	GATK_PASS
5	.	157034930	NA	NA	C	T	0.001337	374	1.381	0.1128	GATK_PASS
5	.	157035007	NA	NA	G	C	0.001337	374	-0.6247	0.4737	GATK_PASS
5	rs13188561	157035022	NA	NA	G	A	0.006684	374	0.3821	0.3296	GATK_PASS
5	.	157035048	NA	NA	CA	C	0	374	NA	NA	GATK_PASS
5	.	157035069	NA	NA	A	G	0.001337	374	-0.6247	0.4737	GATK_PASS
5	.	157035071	NA	NA	G	A	0.001337	374	-0.6247	0.4737	GATK_PASS
5	.	157035091	NA	NA	A	G	0.001337	374	0.378	0.6647	GATK_PASS
5	rs36072678	157035178	NA	NA	AT	A	0.001337	374	0.378	0.6647	GATK_PASS
5	rs36072678	157035178	NA	NA	A	AT	0.0107	374	0.2575	0.4079	GATK_PASS
5	rs146971954	157035180	NA	NA	A	T	0	371	NA	NA	GATK_PASS
5	.	157035191	NA	NA	T	C	0	374	NA	NA	GATK_PASS
5	rs193013688	157035204	NA	NA	G	C	0	374	NA	NA	GATK_PASS
5	rs76253806	157035281	NA	NA	G	T	0	374	NA	NA	GATK_PASS
5	rs184052568	157035294	NA	NA	C	T	0	374	NA	NA	GATK_PASS
5	.	157035396	NA	NA	G	T	0	374	NA	NA	GATK_PASS
5	rs138126450	157035510	NA	NA	G	A	0	374	NA	NA	GATK_PASS
5	rs199662466	157035794	NA	NA	TA	T	0.01337	374	0.1819	0.5147	GATK_PASS
5	.	157035859	NA	NA	G	T	0.001337	374	-0.6247	0.4737	GATK_PASS
5	rs11134517	157035877	NA	NA	A	G	0.006684	374	0.3821	0.3296	GATK_PASS
5	.	157035971	NA	NA	A	G	0	374	NA	NA	GATK_PASS
5	rs1910053	157036052	0.1564	0.2627	G	A	0.1551	374	0.07731	0.3745	GATK_PASS
5	rs147067459	157036109	NA	NA	A	G	0	374	NA	NA	GATK_PASS
5	rs112237485	157036145	NA	NA	T	C	0	374	NA	NA	GATK_PASS
5	.	157036160	NA	NA	C	T	0	374	NA	NA	GATK_PASS
5	.	157036171	NA	NA	T	C	0.001337	374	-0.6247	0.4737	GATK_PASS
5	.	157036201	NA	NA	A	G	0	374	NA	NA	GATK_PASS
5	rs112152484	157036204	NA	NA	A	C	0	374	NA	NA	GATK_PASS
5	rs111844949	157036228	NA	NA	C	CA	0	374	NA	NA	GATK_PASS
5	.	157036283	NA	NA	G	C	0	374	NA	NA	GATK_PASS
5	rs10462975	157036347	0.03191	0.6698	T	C	0.3476	374	-0.01212	0.8589	GATK_PASS
5	.	157036351	NA	NA	T	C	0	374	NA	NA	GATK_PASS
5	.	157036427	NA	NA	T	C	0.001337	374	1.381	0.1128	GATK_PASS
5	.	157036589	NA	NA	T	C	0	374	NA	NA	GATK_PASS
5	rs12108834	157036590	NA	NA	C	A	0.006684	374	0.3821	0.3296	GATK_PASS
5	rs151088275	157036898	NA	NA	GT	G	0.002674	374	-1.129	0.0669	GATK_PASS
5	rs151088275	157036898	NA	NA	G	GT	0.001337	374	-0.6247	0.4737	GATK_PASS
5	rs72805150	157036917	NA	NA	T	G	0.04412	374	0.1808	0.2543	GATK_PASS
5	.	157036974	NA	NA	A	C	0	374	NA	NA	GATK_PASS
5	.	157036982	NA	NA	T	A	0	374	NA	NA	GATK_PASS
5	rs373720714	157036994	NA	NA	T	A	0	374	NA	NA	GATK_PASS
5	rs141576966	157037104	NA	NA	T	C	0.001337	374	1.381	0.1128	GATK_PASS
5	rs4704837	157037201	0.1564	0.2627	T	G	0.1551	374	0.07731	0.3745	GATK_PASS
5	rs2036402	157037231	-0.1796	0.0629	C	T	0.254	374	-0.1263	0.08837	GATK_PASS
5	rs41297583	157037235	NA	NA	A	G	0	374	NA	NA	GATK_PASS
5	rs370221161	157037250	NA	NA	C	T	0.002674	374	0.379	0.5393	GATK_PASS
5	rs199758684	157037281	NA	NA	G	C	0.001337	374	1.381	0.1128	GATK_PASS
5	.	157037303	NA	NA	T	C	0	374	NA	NA	GATK_PASS
5	.	157037311	NA	NA	C	G	0.001337	374	0.378	0.6647	GATK_PASS
5	.	157037481	NA	NA	T	C	0	374	NA	NA	GATK_PASS
5	rs184142574	157037488	NA	NA	A	G	0.005348	374	0.3811	0.3839	GATK_PASS
5	.	157037583	NA	NA	A	G	0.001337	374	-0.6247	0.4737	GATK_PASS
5	.	157037742	NA	NA	A	G	0	374	NA	NA	GATK_PASS
5	rs146350269	157037747	NA	NA	C	G	0	374	NA	NA	GATK_PASS
5	.	157037792	NA	NA	A	C	0	374	NA	NA	GATK_PASS
5	rs111228693	157037815	NA	NA	G	A	0	374	NA	NA	GATK_PASS
5	rs189418788	157037842	NA	NA	T	C	0	374	NA	NA	GATK_PASS
5	rs144432160	157037851	NA	NA	G	T	0.03209	374	0.09119	0.6197	GATK_PASS
5	.	157037858	NA	NA	G	A	0.001337	374	1.381	0.1128	GATK_PASS
5	.	157037868	NA	NA	T	G	0	374	NA	NA	GATK_PASS
5	rs146449369	157037873	NA	NA	C	G	0.004011	374	0.3801	0.4514	GATK_PASS
5	.	157037881	NA	NA	T	C	0.006684	374	0.3821	0.3296	GATK_PASS
5	.	157037886	NA	NA	T	C	0	374	NA	NA	GATK_PASS
5	.	157037914	NA	NA	A	G	0	374	NA	NA	GATK_FAIL
5	rs371562593	157037950	NA	NA	C	T	0	374	NA	NA	GATK_PASS
5	.	157037968	NA	NA	C	T	0.001337	374	-1.627	0.06145	GATK_PASS
5	rs10658898;rs71849994	157038006	-0.0402	0.5257	CAAAAA	C	0.496	374	-0.03314	0.6047	GATK_PASS
5	rs10658898;rs71849994	157038006	NA	NA	C	CGAA	0	374	NA	NA	GATK_PASS
5	.	157038007	NA	NA	T	G	0.002427	206	-0.6488	0.4582	GATK_FAIL
5	.	157038011	NA	NA	G	A	0	360	NA	NA	GATK_FAIL
5	rs368571435;rs369563938;rs375977139	157038023	0.1924	0.0514	G	GA	0.2446	370	0.07815	0.2993	GATK_PASS
5	rs368571435;rs369563938;rs375977139	157038023	NA	NA	G	GAA	0	370	NA	NA	GATK_PASS
5	rs70984427;rs10213795	157038032	-0.1796	0.0629	AT	A	0.254	374	-0.1263	0.08837	GATK_PASS
5	rs70984427;rs10213795	157038032	0.196	0.0463	T	A	0.242	374	0.083	0.2671	GATK_PASS
5	.	157038124	NA	NA	T	C	0	374	NA	NA	GATK_PASS
5	rs139538276	157038209	NA	NA	A	G	0	374	NA	NA	GATK_PASS
5	rs6878732	157038245	0.196	0.0463	A	T	0.242	374	0.083	0.2671	GATK_PASS
5	rs114890596	157038358	NA	NA	T	C	0	374	NA	NA	GATK_PASS
5	rs145464242	157038557	NA	NA	A	T	0.004011	374	0.04403	0.9305	GATK_PASS
5	rs186167387	157038596	NA	NA	C	G	0	374	NA	NA	GATK_PASS
5	rs75003283	157038632	NA	NA	T	C	0	374	NA	NA	GATK_PASS
5	rs17054122	157038652	0.0269	0.7141	C	T	0.3489	374	-0.009599	0.8868	GATK_PASS
5	.	157038681	NA	NA	C	T	0	374	NA	NA	GATK_PASS
5	.	157038682	NA	NA	G	A	0.001337	374	1.381	0.1128	GATK_PASS
5	rs78877854	157038698	NA	NA	T	G	0.004011	374	0.04403	0.9305	GATK_PASS
5	.	157038714	NA	NA	C	G	0	374	NA	NA	GATK_PASS
5	.	157038839	NA	NA	A	C	0	374	NA	NA	GATK_FAIL
5	rs72805151	157038856	-0.1796	0.0629	G	A	0.254	374	-0.1263	0.08837	GATK_PASS
5	rs181412144	157038877	NA	NA	T	C	0	374	NA	NA	GATK_PASS
5	.	157038980	NA	NA	A	G	0	374	NA	NA	GATK_PASS
5	rs115724256	157039045	NA	NA	A	G	0	374	NA	NA	GATK_PASS
5	.	157039103	NA	NA	A	G	0	374	NA	NA	GATK_PASS
5	.	157039109	NA	NA	C	G	0	374	NA	NA	GATK_PASS
5	.	157039110	NA	NA	A	ACT	0	374	NA	NA	GATK_FAIL
5	rs190981772	157039120	NA	NA	A	G	0.009358	374	0.2386	0.4726	GATK_PASS
5	rs10059699	157039143	0.2104	0.03614	C	T	0.2353	374	0.07023	0.3518	GATK_PASS
5	rs1501909	157039168	0.0269	0.7141	T	G	0.3489	374	-0.009599	0.8868	GATK_PASS
5	rs147014628	157039181	NA	NA	G	A	0	374	NA	NA	GATK_PASS
5	.	157039409	NA	NA	C	T	0	374	NA	NA	GATK_PASS
5	.	157039497	NA	NA	T	C	0.001337	374	1.381	0.1128	GATK_PASS
5	rs6862569	157039537	-0.133	0.1529	C	G	0.2607	374	-0.1096	0.1342	GATK_PASS
5	.	157039566	NA	NA	G	C	0.001337	374	1.381	0.1128	GATK_PASS
5	rs183297799	157039579	NA	NA	A	C	0	374	NA	NA	GATK_PASS
5	rs142145323	157039588	NA	NA	T	A	0	374	NA	NA	GATK_PASS
5	rs6884501	157039609	-0.1796	0.0629	G	A	0.254	374	-0.1263	0.08837	GATK_PASS
5	rs10428636	157039629	NA	NA	A	G	0.006684	374	0.3821	0.3296	GATK_PASS
5	.	157039638	NA	NA	T	C	0	374	NA	NA	GATK_PASS
5	.	157039675	NA	NA	T	G	0	374	NA	NA	GATK_PASS
5	rs6889164	157039767	-0.133	0.1529	C	T	0.2607	374	-0.1096	0.1342	GATK_PASS
5	.	157040015	NA	NA	A	G	0	374	NA	NA	GATK_PASS
5	.	157040022	NA	NA	T	C	0.001337	374	-0.6247	0.4737	GATK_PASS
5	rs76752642	157040023	NA	NA	A	G	0	374	NA	NA	GATK_PASS
5	.	157040025	NA	NA	A	G	0	374	NA	NA	GATK_PASS
5	.	157040088	NA	NA	T	C	0	374	NA	NA	GATK_PASS
5	.	157040132	NA	NA	G	C	0	374	NA	NA	GATK_FAIL
5	rs6864898	157040142	0.1564	0.2627	C	T	0.1551	374	0.07731	0.3745	GATK_PASS
5	rs142284922;rs68135952	157040204	-0.1796	0.0629	A	AGGAGAATT	0.254	374	-0.1263	0.08837	GATK_PASS
5	rs371833532	157040253	NA	NA	A	G	0	374	NA	NA	GATK_PASS
5	rs67596524	157040298	NA	NA	CA	C	0	374	NA	NA	GATK_PASS
5	rs67596524	157040298	-0.1339	0.1499	C	CA	0.258	374	-0.1148	0.1163	GATK_PASS
5	rs56182597	157040299	0.2104	0.03614	C	A	0.2353	374	0.07023	0.3518	GATK_FAIL
5	.	157040307	NA	NA	G	A	0	374	NA	NA	GATK_PASS
5	.	157040312	NA	NA	A	G	0	374	NA	NA	GATK_FAIL
5	rs17054133	157040380	0.2361	0.02135	C	T	0.2313	374	0.07041	0.3546	GATK_PASS
5	rs182426864	157040423	NA	NA	T	C	0	374	NA	NA	GATK_PASS
5	.	157040467	NA	NA	C	T	0	374	NA	NA	GATK_PASS
5	rs114241029	157040617	NA	NA	A	G	0	374	NA	NA	GATK_PASS
5	rs79224155	157040654	NA	NA	C	T	0	374	NA	NA	GATK_PASS
5	.	157040715	NA	NA	T	C	0	374	NA	NA	GATK_PASS
5	rs12519754	157040721	NA	NA	A	G	0.006684	374	0.3821	0.3296	GATK_PASS
5	rs12514759	157040751	NA	NA	T	C	0.006684	374	0.3821	0.3296	GATK_PASS
5	.	157040822	NA	NA	T	C	0.002674	374	-0.6263	0.3101	GATK_PASS
5	.	157040831	NA	NA	C	T	0	374	NA	NA	GATK_PASS
5	rs12519790	157040839	NA	NA	A	G	0.006684	374	0.3821	0.3296	GATK_PASS
5	.	157040873	NA	NA	T	C	0	374	NA	NA	GATK_PASS
5	.	157040905	NA	NA	T	A	0	374	NA	NA	GATK_PASS
5	rs77713546	157040906	NA	NA	G	T	0	374	NA	NA	GATK_PASS
5	.	157040994	NA	NA	C	T	0	374	NA	NA	GATK_PASS
5	rs191125843	157040997	NA	NA	T	C	0	374	NA	NA	GATK_PASS
5	rs182867338	157041010	NA	NA	G	A	0	374	NA	NA	GATK_PASS
5	rs34615648	157041015	NA	NA	A	C	0.006684	374	0.3821	0.3296	GATK_PASS
5	.	157041017	NA	NA	T	G	0.001337	374	-0.6247	0.4737	GATK_PASS
5	.	157041100	NA	NA	C	A	0	374	NA	NA	GATK_PASS
5	.	157041220	NA	NA	A	G	0	374	NA	NA	GATK_FAIL
5	rs35279110	157041255	-0.1796	0.0629	G	T	0.254	374	-0.1263	0.08837	GATK_PASS
5	rs35065875	157041264	NA	NA	G	A	0.006684	374	0.3821	0.3296	GATK_PASS
5	.	157041269	NA	NA	A	G	0.001337	374	1.381	0.1128	GATK_FAIL
5	rs35901597	157041318	NA	NA	C	T	0.006684	374	0.3821	0.3296	GATK_PASS
5	rs35153980	157041332	NA	NA	A	T	0.006684	374	0.3821	0.3296	GATK_PASS
5	rs6555818	157041352	0.1564	0.2627	T	G	0.1551	374	0.07731	0.3745	GATK_PASS
5	.	157041384	NA	NA	A	G	0	374	NA	NA	GATK_PASS
5	rs12656989	157041391	0.02964	0.6814	A	G	0.3529	374	-0.008669	0.8969	GATK_PASS
5	.	157041481	NA	NA	A	G	0	368	NA	NA	GATK_FAIL
5	rs10631016	157041488	0.1564	0.2627	A	ACT	0.1551	374	0.07731	0.3745	GATK_PASS
5	rs77127390	157041502	NA	NA	A	T	0.006684	374	0.3821	0.3296	GATK_PASS
5	rs6555819	157041528	0.2361	0.02135	A	G	0.2313	374	0.07041	0.3546	GATK_PASS
5	rs188089963	157041594	NA	NA	C	T	0	374	NA	NA	GATK_PASS
5	rs7715467	157041643	0.1564	0.2627	C	G	0.1551	374	0.07731	0.3745	GATK_PASS
5	.	157041680	NA	NA	C	T	0	374	NA	NA	GATK_FAIL
5	rs373781681	157041775	NA	NA	A	G	0	374	NA	NA	GATK_FAIL
5	.	157041786	NA	NA	A	C	0	374	NA	NA	GATK_PASS
5	rs6874311	157041787	0.2361	0.02135	T	G	0.2313	374	0.07041	0.3546	GATK_PASS
5	rs371032466	157041796	NA	NA	T	C	0	374	NA	NA	GATK_PASS
5	rs369102368	157041829	NA	NA	T	C	0	374	NA	NA	GATK_PASS
5	.	157041889	NA	NA	T	C	0	374	NA	NA	GATK_PASS
5	.	157041917	NA	NA	T	G	0.001337	374	-0.6247	0.4737	GATK_PASS
5	.	157041945	NA	NA	C	A	0.001337	374	1.381	0.1128	GATK_PASS
5	rs183664912	157041981	NA	NA	T	C	0.001337	374	-0.6247	0.4737	GATK_PASS
5	rs56136188	157042087	-0.02165	0.7455	AT	A	0.4158	374	-0.04345	0.5051	GATK_PASS
5	rs7701934	157042093	NA	NA	G	T	0	374	NA	NA	GATK_PASS
5	.	157042108	NA	NA	C	T	0	374	NA	NA	GATK_PASS
5	rs35442741	157042137	NA	NA	G	A	0.006684	374	0.3821	0.3296	GATK_PASS
5	rs9313418	157042213	0.2361	0.02135	T	C	0.2313	374	0.07041	0.3546	GATK_PASS
5	rs147636552	157042217	NA	NA	T	C	0	374	NA	NA	GATK_PASS
5	.	157042304	NA	NA	G	T	0	374	NA	NA	GATK_FAIL
5	rs181878549	157042311	0.3323	0.4468	A	G	0.0107	374	0.2051	0.4602	GATK_PASS
5	rs12520634	157042315	-0.133	0.1529	A	G	0.2607	374	-0.1096	0.1342	GATK_PASS
5	rs12520651	157042367	NA	NA	A	G	0.006684	374	0.3821	0.3296	GATK_PASS
5	rs372022585;rs144701880;rs70984428	157042441	NA	NA	CA	C	0.008021	374	0.3832	0.2848	GATK_PASS
5	rs372022585;rs144701880;rs70984428	157042441	NA	NA	CAA	C	0	374	NA	NA	GATK_PASS
5	rs372022585;rs144701880;rs70984428	157042441	0.06068	0.4215	C	CA	0.3463	374	0.003987	0.9536	GATK_PASS
5	rs372022585;rs144701880;rs70984428	157042441	-0.004708	0.9426	C	CAA	0.4412	374	-0.008882	0.8915	GATK_PASS
5	rs372022585;rs144701880;rs70984428	157042441	-0.9041	0.03608	C	CAAA	0.03342	374	-0.2201	0.203	GATK_PASS
5	.	157042443	NA	NA	C	A	0	328	NA	NA	GATK_FAIL
5	rs372986227	157042472	NA	NA	T	C	0	374	NA	NA	GATK_PASS
5	rs79479846	157042536	NA	NA	C	T	0.02005	374	-0.1629	0.4779	GATK_PASS
5	.	157042771	NA	NA	A	C	0.001337	374	-0.6247	0.4737	GATK_FAIL
5	rs2270926	157042772	0.2482	0.05113	A	G	0.1898	374	0.03154	0.7015	GATK_PASS
5	rs13173581	157042797	-0.133	0.1529	T	C	0.2607	374	-0.1096	0.1342	GATK_PASS
5	rs190193595	157042831	NA	NA	C	G	0.002674	374	-0.1237	0.8413	GATK_PASS
5	rs145566317	157042836	NA	NA	G	T	0	374	NA	NA	GATK_PASS
5	rs149153840	157042845	NA	NA	G	A	0	374	NA	NA	GATK_PASS
5	rs75433668	157042889	NA	NA	T	C	0	374	NA	NA	GATK_PASS
5	rs77148338	157042890	NA	NA	A	G	0.001337	374	0.378	0.6647	GATK_PASS
5	rs3215120;rs35831613	157043137	0.02964	0.6814	C	CAGA	0.3529	374	-0.008669	0.8969	GATK_PASS
5	.	157043313	NA	NA	T	C	0	374	NA	NA	GATK_PASS
5	.	157043321	NA	NA	C	T	0.001337	374	0.378	0.6647	GATK_PASS
5	rs10038271	157043390	0.2482	0.05113	T	C	0.1898	374	0.03154	0.7015	GATK_PASS
5	rs180769751	157043423	NA	NA	C	T	0.006684	374	-0.02331	0.9526	GATK_PASS
5	.	157043442	NA	NA	A	G	0.001337	374	1.381	0.1128	GATK_PASS
5	.	157043549	NA	NA	C	G	0	374	NA	NA	GATK_PASS
5	.	157043565	NA	NA	C	T	0	374	NA	NA	GATK_PASS
5	rs74683840	157043765	NA	NA	A	C	0.006684	374	0.3821	0.3296	GATK_PASS
5	.	157043821	NA	NA	T	G	0.001337	374	1.381	0.1128	GATK_PASS
5	.	157043833	NA	NA	T	C	0	374	NA	NA	GATK_PASS
5	.	157044023	NA	NA	C	T	0	374	NA	NA	GATK_PASS
5	rs6878069	157044058	-0.03907	0.5362	G	A	0.492	374	-0.03368	0.5979	GATK_PASS
5	rs143297049	157044094	NA	NA	A	G	0	374	NA	NA	GATK_PASS
5	.	157044147	NA	NA	A	T	0	374	NA	NA	GATK_PASS
5	rs183339688	157044192	NA	NA	T	C	0	374	NA	NA	GATK_PASS
5	.	157044324	NA	NA	C	T	0.001337	374	0.378	0.6647	GATK_PASS
5	rs199965806	157044340	NA	NA	AAAGGG	A	0	374	NA	NA	GATK_PASS
5	rs115923148	157044368	-0.03782	0.6745	CGAAG	C	0.1247	373	-0.02582	0.7457	GATK_FAIL
5	rs115923148	157044368	NA	NA	CGAAGGAAG	C	0.005362	373	1.138	0.009103	GATK_FAIL
5	rs115923148	157044368	NA	NA	T	C	0.006702	373	0.1777	0.6506	GATK_FAIL
5	rs115923148	157044368	NA	NA	C	CGAAG	0.008043	373	-0.1267	0.7239	GATK_FAIL
5	rs115923148	157044368	0.1774	0.3182	C	CGAAGGAAGGAAGGAAGGAAGGAAG	0.05764	373	0.1427	0.2465	GATK_FAIL
5	rs115923148	157044368	NA	NA	C	CGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAG	0.00134	373	0.3763	0.6663	GATK_FAIL
5	rs191746478	157044372	NA	NA	A	G	0.00134	373	-0.621	0.4754	GATK_PASS
5	.	157044387	NA	NA	A	AGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGG	0.001348	371	-0.6243	0.4736	GATK_FAIL
5	.	157044394	-0.2662	0.5367	A	AAG	0.0231	368	-0.134	0.5098	GATK_FAIL
5	.	157044397	NA	NA	GAGA	G	0	364	NA	NA	GATK_FAIL
5	rs377068518	157044398	-0.04439	0.6582	A	AAG	0.1829	369	-0.04602	0.5528	GATK_FAIL
5	.	157044399	-0.2692	0.5327	A	AGGAAGGAAGGAAGGAAGGAAGG	0.01087	368	-0.09513	0.731	GATK_FAIL
5	.	157044400	NA	NA	A	G	0.009511	368	-0.0463	0.8888	GATK_FAIL
5	.	157044400	NA	NA	GAAA	G	0	368	NA	NA	GATK_FAIL
5	.	157044400	NA	NA	G	GGAAGGAAGGAAGGAAGGAAGGAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	0	368	NA	NA	GATK_FAIL
5	.	157044402	NA	NA	A	AAG	0.002976	336	0.8952	0.1458	GATK_FAIL
5	.	157044403	-0.06927	0.6752	A	AGGAAGGAAGGAAGGAAGG	0.09831	356	-0.07767	0.4544	GATK_FAIL
5	rs58301176	157044404	-0.02854	0.8724	A	G	0.07902	367	-0.01178	0.9157	GATK_FAIL
5	rs58301176	157044404	NA	NA	G	GGAAGGAAGGAAGGAAGGAGAAAGAAAGAAAGAAAGAAAGAAA	0	367	NA	NA	GATK_FAIL
5	.	157044405	NA	NA	GAGA	G	0	350	NA	NA	GATK_FAIL
5	.	157044406	NA	NA	A	AAG	0	354	NA	NA	GATK_FAIL
5	.	157044407	0.271	0.2098	A	AGGAAGGAAGGAAGG	0.02933	358	0.2873	0.07963	GATK_FAIL
5	.	157044408	-0.1636	0.5125	A	G	0.04087	367	-0.193	0.1975	GATK_FAIL
5	.	157044408	NA	NA	GAAA	G	0	367	NA	NA	GATK_FAIL
5	.	157044410	-0.3385	0.4345	A	AAG	0.006849	365	-0.3043	0.358	GATK_FAIL
5	.	157044411	-0.3165	0.3026	A	AGGAAGGAAGG	0.01635	367	-0.2172	0.3228	GATK_FAIL
5	.	157044412	NA	NA	A	G	0.01087	368	-0.1194	0.7	GATK_FAIL
5	.	157044412	NA	NA	G	GGAAGGAAGGAGAAAGAAAGAAAGAAAGAAAGAAA	0	368	NA	NA	GATK_FAIL
5	.	157044414	0.009251	0.9704	A	AAG	0.02033	369	-0.2093	0.2766	GATK_FAIL
5	.	157044415	-0.3333	0.4398	A	AGGAAGG	0.008174	367	-0.2145	0.4873	GATK_FAIL
5	rs60700915	157044416	NA	NA	A	G	0	367	NA	NA	GATK_FAIL
5	rs60700915	157044416	NA	NA	G	GGAAGGAGAAAGAAAGAAAGAAAGAAAGAAA	0	367	NA	NA	GATK_FAIL
5	.	157044417	NA	NA	GAGA	G	0.00277	361	-0.6184	0.3159	GATK_FAIL
5	.	157044417	NA	NA	G	GAAGGAGAAAGAA	0	361	NA	NA	GATK_FAIL
5	.	157044417	NA	NA	G	GAAGGAGAAAGAAAGAA	0	361	NA	NA	GATK_FAIL
5	rs60322916	157044419	0.01582	0.9499	A	AGG	0.02161	347	-0.1982	0.3058	GATK_FAIL
5	.	157044420	NA	NA	A	G	0	355	NA	NA	GATK_FAIL
5	.	157044420	NA	NA	GA	G	0.002817	355	-0.6062	0.322	GATK_FAIL
5	.	157044420	NA	NA	G	GGA	0.02535	355	0.06726	0.7475	GATK_FAIL
5	.	157044422	0.0262	0.7322	AAG	A	0.2143	343	0.03797	0.5829	GATK_FAIL
5	.	157044423	NA	NA	GAAAGA	G	0.002882	347	-0.1232	0.8432	GATK_FAIL
5	.	157044425	-0.09439	0.4985	AGG	A	0.09972	356	-0.006215	0.9503	GATK_FAIL
5	.	157044426	0.1302	0.2921	G	A	0.1053	356	0.07065	0.4581	GATK_PASS
5	.	157044427	-0.1622	0.4566	GA	G	0.07022	356	0.002314	0.9849	GATK_FAIL
5	.	157044427	NA	NA	G	GA	0	356	NA	NA	GATK_FAIL
5	.	157044427	NA	NA	G	GAA	0	356	NA	NA	GATK_FAIL
5	.	157044427	NA	NA	G	GAAA	0.002809	356	0.8672	0.1613	GATK_FAIL
5	rs371960394	157044428	NA	NA	A	AAAG	0.03549	324	-0.1862	0.3264	GATK_FAIL
5	.	157044429	0.1472	0.4986	AGG	A	0.05337	356	-0.008036	0.9525	GATK_FAIL
5	.	157044429	NA	NA	G	A	0	356	NA	NA	GATK_FAIL
5	.	157044430	-0.02993	0.8786	G	A	0.0431	348	-0.0106	0.941	GATK_FAIL
5	.	157044431	0.1339	0.663	GA	G	0.03478	345	0.2817	0.09679	GATK_FAIL
5	.	157044432	NA	NA	A	AAAG	0.01484	337	0.3609	0.1971	GATK_FAIL
5	.	157044433	NA	NA	AAG	A	0	352	NA	NA	GATK_FAIL
5	.	157044433	NA	NA	AGG	A	0.01847	352	0.1409	0.5674	GATK_FAIL
5	.	157044434	-0.02485	0.9214	G	A	0.01816	358	-0.06513	0.75	GATK_FAIL
5	.	157044435	NA	NA	GA	G	0.02228	359	-0.004738	0.9833	GATK_FAIL
5	.	157044436	NA	NA	A	AAAG	0	356	NA	NA	GATK_FAIL
5	.	157044436	NA	NA	A	AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGGAAGGAAGG	0	356	NA	NA	GATK_FAIL
5	.	157044436	NA	NA	A	AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGGAAGGAAGGAAGG	0	356	NA	NA	GATK_FAIL
5	.	157044436	NA	NA	A	AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGGAAGGAAGGAAGGAAGGAAGG	0	356	NA	NA	GATK_FAIL
5	.	157044437	NA	NA	AAGAAAGAAAGAGAGAG	A	0	363	NA	NA	GATK_FAIL
5	.	157044437	NA	NA	AGG	A	0.006887	363	0.1771	0.6537	GATK_FAIL
5	.	157044437	0.1106	0.7994	AGGAAGG	A	0.004132	363	0.02492	0.9494	GATK_FAIL
5	.	157044438	NA	NA	G	A	0.004087	367	-0.6291	0.2153	GATK_FAIL
5	.	157044439	NA	NA	GA	G	0.006757	370	0.1781	0.6509	GATK_FAIL
5	.	157044440	NA	NA	A	AAAG	0	370	NA	NA	GATK_FAIL
5	.	157044440	NA	NA	A	AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGGAAGGAAGG	0.002703	370	-0.1277	0.8367	GATK_FAIL
5	.	157044440	NA	NA	A	AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGGAAGGAAGGAAGG	0	370	NA	NA	GATK_FAIL
5	.	157044440	NA	NA	A	AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGGAAGGAAGGAAGGAAGG	0	370	NA	NA	GATK_FAIL
5	.	157044441	NA	NA	AGG	A	0.004054	370	-0.6322	0.2115	GATK_FAIL
5	.	157044444	NA	NA	A	AAAGAAAGAAAGAAAGAAAGAAAGAAAGGAAGGAAGGAAGG	0	373	NA	NA	GATK_FAIL
5	.	157044448	NA	NA	A	AAAGAAAGAAAGAAAGAAAGAAAGGAAGG	0.001344	372	1.377	0.1142	GATK_FAIL
5	.	157044448	NA	NA	A	AAAGAAAGAAAGAAAGAAAGAAAGGAAGGAAGG	0.001344	372	0.3747	0.6679	GATK_FAIL
5	.	157044452	NA	NA	A	AAAGAAAGAAAGAAAGAAAGGAAGGAAGGAAGG	0	372	NA	NA	GATK_FAIL
5	.	157044456	NA	NA	A	AAAGAAAGAAAGAAAGG	0	372	NA	NA	GATK_FAIL
5	.	157044456	NA	NA	A	AAAGAAAGAAAGAAAGGAAGGAAGGAAGGAAGGAAGG	0	372	NA	NA	GATK_FAIL
5	.	157044460	NA	NA	A	AAAGAAAGAAAGGAAGGAAGGAAGGAAGGAAGG	0	372	NA	NA	GATK_FAIL
5	.	157044464	NA	NA	G	A	0	373	NA	NA	GATK_FAIL
5	.	157044464	NA	NA	A	AAAGAAAGG	0.002681	373	0.8801	0.1538	GATK_FAIL
5	.	157044464	NA	NA	A	AAAGAAAGGAAGG	0	373	NA	NA	GATK_FAIL
5	.	157044464	NA	NA	A	AAAGAAAGGAAGGAAGGAAGG	0	373	NA	NA	GATK_FAIL
5	.	157044464	NA	NA	A	AAAGAAAGGAAGGAAGGAAGGAAGGAAGG	0.005362	373	-0.126	0.7736	GATK_FAIL
5	.	157044466	NA	NA	AG	A	0.001344	372	-0.628	0.4719	GATK_FAIL
5	rs201674334;rs201451883	157044468	NA	NA	AAGG	A	0.00137	365	-0.6209	0.4788	GATK_FAIL
5	rs201674334;rs201451883	157044468	NA	NA	G	A	0.006849	365	0.1833	0.642	GATK_FAIL
5	rs201674334;rs201451883	157044468	NA	NA	A	AAAGGAAGGAAGGAAGG	0.02466	365	-0.06692	0.7519	GATK_FAIL
5	rs201674334;rs201451883	157044468	0.05594	0.8244	A	AAAGGAAGGAAGGAAGGAAGGAAGG	0.06986	365	0.04856	0.6953	GATK_FAIL
5	rs201674334;rs201451883	157044468	NA	NA	A	AAAGGAAGGAAGGAAGGAAGGAAGGAAGG	0.01781	365	-0.4825	0.05048	GATK_FAIL
5	rs368187622	157044470	0.02739	0.6544	A	AG	0.4075	373	0.04282	0.4784	GATK_PASS
5	.	157044471	NA	NA	GAAA	G	0.004021	373	0.04505	0.929	GATK_FAIL
5	rs59241787	157044472	-0.1104	0.1402	A	G	0.3792	269	-0.1198	0.09889	GATK_FAIL
5	rs59241787	157044472	NA	NA	GA	G	0	269	NA	NA	GATK_FAIL
5	rs59241787	157044472	NA	NA	GAAAGA	G	0.001859	269	1.381	0.1154	GATK_FAIL
5	rs59241787	157044472	NA	NA	GAAAGAAAGA	G	0.001859	269	-0.6269	0.4755	GATK_FAIL
5	rs59740130	157044473	-0.2992	0.487	A	AAGG	0.01355	369	0.2336	0.3566	GATK_FAIL
5	rs59740130	157044473	0.04397	0.7633	A	AAGGAAGG	0.08266	369	-0.002713	0.9793	GATK_FAIL
5	rs59740130	157044473	-0.1723	0.1588	A	AAGGAAGGAAGG	0.1084	369	-0.125	0.1748	GATK_FAIL
5	rs59740130	157044473	0.1373	0.3449	A	AAGGAAGGAAGGAAGG	0.08537	369	0.06493	0.5308	GATK_FAIL
5	rs59740130	157044473	0.2203	0.2559	A	AAGGAAGGAAGGAAGGAAGG	0.0935	369	0.08782	0.4107	GATK_FAIL
5	.	157044475	NA	NA	A	G	0	368	NA	NA	GATK_FAIL
5	.	157044475	NA	NA	T	G	0	368	NA	NA	GATK_FAIL
5	.	157044475	NA	NA	G	GGAAGGAAGGAAGGA	0	368	NA	NA	GATK_FAIL
5	.	157044475	NA	NA	G	GGAAGGAAGGAAGGAAGGA	0	368	NA	NA	GATK_FAIL
5	.	157044475	-0.1815	0.122	G	GGAAGGAAGGAAGGAAGGAAGGA	0.08967	368	-0.1347	0.1582	GATK_FAIL
5	rs377410903	157044476	-0.07266	0.2733	A	G	0.3123	373	-0.0917	0.1409	GATK_PASS
5	.	157044478	-0.06211	0.7095	C	A	0.04454	348	-0.05728	0.671	GATK_FAIL
5	.	157044479	-0.06211	0.7095	GAAA	G	0.04454	348	-0.05728	0.671	GATK_PASS
5	.	157044479	NA	NA	GAAAT	G	0	348	NA	NA	GATK_PASS
5	.	157044479	NA	NA	T	G	0	348	NA	NA	GATK_PASS
5	.	157044479	NA	NA	G	GGAAGGAAGGAAGGAAGGA	0	348	NA	NA	GATK_PASS
5	rs200755696	157044480	-0.05438	0.3929	A	G	0.3159	372	-0.07533	0.2142	GATK_PASS
5	.	157044483	0.1379	0.5836	GAAA	G	0.02193	342	0.0345	0.858	GATK_FAIL
5	rs59678370	157044484	-0.06748	0.262	A	G	0.3784	370	-0.05931	0.314	GATK_PASS
5	rs59916960	157044488	-0.1188	0.22	A	G	0.1811	359	-0.1119	0.148	GATK_FAIL
5	rs59916960	157044488	NA	NA	G	GA	0	359	NA	NA	GATK_FAIL
5	.	157044490	NA	NA	A	AGGAAGGAAGGAAGGAAGGAG	0.00289	346	-0.1279	0.8354	GATK_FAIL
5	rs200723533;rs373034767	157044492	-0.02012	0.813	A	G	0.2507	363	-0.02864	0.6869	GATK_FAIL
5	rs200723533;rs373034767	157044492	NA	NA	G	GA	0	363	NA	NA	GATK_FAIL
5	rs57740852	157044496	0.1009	0.5466	A	G	0.1465	372	0.0002362	0.9979	GATK_PASS
5	.	157044500	NA	NA	A	G	0.001337	374	0.378	0.6647	GATK_PASS
5	.	157044502	NA	NA	A	AGG	0	374	NA	NA	GATK_FAIL
5	.	157044503	NA	NA	G	GGAAGGAGGAAGGAAGGAAA	0	374	NA	NA	GATK_FAIL
5	.	157044505	NA	NA	A	AAGG	0.001337	374	0.378	0.6647	GATK_FAIL
5	.	157044505	NA	NA	A	AAGGAGGAAGGAAG	0	374	NA	NA	GATK_FAIL
5	.	157044506	NA	NA	A	AGG	0	374	NA	NA	GATK_FAIL
5	.	157044509	NA	NA	A	AGGAAGGAAG	0	373	NA	NA	GATK_FAIL
5	.	157044544	NA	NA	G	GAGGA	0.001337	374	-0.6247	0.4737	GATK_PASS
5	rs74209831	157044562	NA	NA	G	A	0.006684	374	0.3821	0.3296	GATK_PASS
5	.	157044575	NA	NA	CAAGG	C	0	374	NA	NA	GATK_PASS
5	.	157044575	NA	NA	CAAGGAAAGAAAGAAAGAAAGAAAGAG	C	0	374	NA	NA	GATK_PASS
5	.	157044575	NA	NA	CAAGGAAAGAAAGAAAGAAAGAAAGAGAAAG	C	0	374	NA	NA	GATK_PASS
5	.	157044577	NA	NA	AGGAAAGAAAGAAAGAAAGAAAG	A	0	374	NA	NA	GATK_FAIL
5	rs78792453	157044578	NA	NA	G	A	0	374	NA	NA	GATK_PASS
5	.	157044583	NA	NA	GA	G	0	372	NA	NA	GATK_FAIL
5	rs72157678;rs7702014	157044586	NA	NA	A	G	0	363	NA	NA	GATK_PASS
5	rs72157678;rs7702014	157044586	-0.323	0.2924	GGAAA	G	0.01791	363	-0.3146	0.1436	GATK_PASS
5	rs72157678;rs7702014	157044586	-0.4238	0.1698	GGAAAGAAA	G	0.03168	363	0.0192	0.9118	GATK_PASS
5	rs72157678;rs7702014	157044586	NA	NA	GGAAAGAAAGAAA	G	0.00551	363	0.3733	0.3964	GATK_PASS
5	rs72157678;rs7702014	157044586	-0.4375	0.3149	GGAAAGAAAGAAAGAAAGAAA	G	0.009642	363	-0.1597	0.5871	GATK_PASS
5	rs72157678;rs7702014	157044586	0.08962	0.5907	G	GGAAA	0.07576	363	-0.09391	0.4034	GATK_PASS
5	rs66497536	157044589	NA	NA	AAGAAAGAAAGAAAGAAAGAAAG	A	0	360	NA	NA	GATK_PASS
5	rs66497536	157044589	NA	NA	A	AAGAAAGAAAGAAAGAAAGAAAGAAAG	0.002778	360	0.8799	0.1545	GATK_PASS
5	.	157044593	NA	NA	AAG	A	0	368	NA	NA	GATK_FAIL
5	.	157044593	NA	NA	AAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	A	0.001359	368	0.3815	0.6615	GATK_FAIL
5	.	157044597	NA	NA	AAG	A	0	373	NA	NA	GATK_FAIL
5	.	157044597	NA	NA	AAGAAAGAAAG	A	0.006702	373	-0.2223	0.57	GATK_FAIL
5	.	157044597	-0.2414	0.215	AAGAAAGAAAGAAAG	A	0.05898	373	-0.04608	0.7111	GATK_FAIL
5	.	157044601	NA	NA	AAG	A	0	373	NA	NA	GATK_FAIL
5	.	157044603	NA	NA	G	GAA	0	373	NA	NA	GATK_FAIL
5	rs200463405	157044605	NA	NA	AAG	A	0.006702	373	-0.01957	0.9601	GATK_FAIL
5	rs200463405	157044605	NA	NA	A	AAGAAAGAAAG	0	373	NA	NA	GATK_FAIL
5	.	157044607	NA	NA	G	GAA	0	373	NA	NA	GATK_PASS
5	.	157044607	NA	NA	G	GAAAGAAAGAGAAAGAA	0	373	NA	NA	GATK_PASS
5	.	157044607	NA	NA	G	GAAAGAAAGAGAAAGAAAGAAAGAA	0	373	NA	NA	GATK_PASS
5	.	157044607	NA	NA	G	GAAAGAAAGAGAAAGAAAGAAAGAAAGAA	0	373	NA	NA	GATK_PASS
5	.	157044607	NA	NA	G	GAAAGAAAGAGAAAGAAAGAAAGAAAGAAAGAAAGAA	0	373	NA	NA	GATK_PASS
5	.	157044608	NA	NA	G	A	0	373	NA	NA	GATK_FAIL
5	rs57400871	157044609	0.08439	0.5628	AAG	A	0.1421	373	0.1422	0.1122	GATK_FAIL
5	.	157044611	-0.3238	0.2881	G	GAAAGAGAA	0.03659	369	-0.09496	0.5561	GATK_FAIL
5	.	157044611	-0.2897	0.344	G	GAAAGAGAAAGAA	0.06775	369	-0.06416	0.6119	GATK_FAIL
5	.	157044611	-0.563	0.06557	G	GAAAGAGAAAGAAAGAA	0.03252	369	-0.2608	0.1223	GATK_FAIL
5	.	157044611	-0.3538	0.4117	G	GAAAGAGAAAGAAAGAAAGAA	0.03252	369	-0.2821	0.108	GATK_FAIL
5	.	157044611	-0.2589	0.5491	G	GAAAGAGAAAGAAAGAAAGAAAGAA	0.04336	369	0.06856	0.6593	GATK_FAIL
5	.	157044611	0.1744	0.6856	G	GAAAGAGAAAGAAAGAAAGAAAGAAAGAA	0.004065	369	0.02778	0.9432	GATK_FAIL
5	rs62382453;rs373940170	157044613	-0.1872	0.6622	G	A	0.02528	356	-0.1192	0.5462	GATK_FAIL
5	rs62382453;rs373940170	157044613	NA	NA	A	AAG	0.04494	356	0.1358	0.3956	GATK_FAIL
5	rs12656096	157044617	-0.04003	0.682	A	G	0.1802	369	-0.009918	0.8976	GATK_FAIL
5	rs12656096	157044617	NA	NA	G	GAA	0.001355	369	-0.6277	0.4702	GATK_FAIL
5	rs199630569	157044619	NA	NA	AAG	A	0.02022	371	-0.232	0.3132	GATK_FAIL
5	rs199630569	157044619	NA	NA	AAGAAAG	A	0.004043	371	-0.2917	0.5645	GATK_FAIL
5	rs199630569	157044619	0.0802	0.6559	AAGAAAGAAAG	A	0.07143	371	0.06965	0.5456	GATK_FAIL
5	rs199630569	157044619	NA	NA	AAGAAAGAAAGAAAG	A	0.001348	371	0.3784	0.6653	GATK_FAIL
5	rs199630569	157044619	NA	NA	G	A	0.001348	371	-0.6243	0.4752	GATK_FAIL
5	.	157044620	0.2638	0.18	G	A	0.05753	365	0.05617	0.658	GATK_FAIL
5	.	157044621	NA	NA	GAA	G	0.00271	369	-0.1294	0.834	GATK_FAIL
5	.	157044621	0.2616	0.1836	GAAAGAA	G	0.05556	369	0.06938	0.5872	GATK_FAIL
5	.	157044621	NA	NA	G	GAA	0.00271	369	0.876	0.1555	GATK_FAIL
5	.	157044621	NA	NA	G	GAAAGAA	0.00542	369	0.1226	0.7795	GATK_FAIL
5	.	157044621	NA	NA	G	GAAAGAAAGAAAGAA	0	369	NA	NA	GATK_FAIL
5	.	157044622	0.265	0.1776	G	A	0.05541	370	0.07086	0.579	GATK_FAIL
5	.	157044623	0.7109	0.0207	AAG	A	0.05391	371	0.1284	0.3543	GATK_FAIL
5	.	157044623	NA	NA	AAGAAAG	A	0.005391	371	0.3815	0.3848	GATK_FAIL
5	.	157044623	NA	NA	AAGAAAGAAAG	A	0.001348	371	-0.6243	0.4752	GATK_FAIL
5	.	157044623	NA	NA	AAGAAAGAAAGAAAGAAAG	A	0.001348	371	-0.6243	0.4752	GATK_FAIL
5	.	157044624	NA	NA	AG	A	0	365	NA	NA	GATK_FAIL
5	.	157044624	0.7076	0.0213	G	A	0.02466	365	0.2703	0.155	GATK_FAIL
5	.	157044625	0.2211	0.3767	GAA	G	0.04313	371	0.004589	0.975	GATK_FAIL
5	.	157044625	NA	NA	G	GAA	0.001348	371	1.384	0.1119	GATK_FAIL
5	.	157044625	NA	NA	G	GAAAGAA	0.002695	371	0.3821	0.5359	GATK_FAIL
5	.	157044625	NA	NA	G	GAAAGAAAGAA	0	371	NA	NA	GATK_FAIL
5	.	157044626	0.7504	0.08201	G	A	0.02022	371	0.1037	0.6295	GATK_FAIL
5	.	157044627	0.7492	0.08235	AAG	A	0.02022	371	0.04275	0.8424	GATK_FAIL
5	.	157044627	NA	NA	AAGAAAG	A	0	371	NA	NA	GATK_FAIL
5	.	157044627	NA	NA	AAGAAAGAAAG	A	0	371	NA	NA	GATK_FAIL
5	.	157044627	NA	NA	AAGAAAGAAAGAAAG	A	0	371	NA	NA	GATK_FAIL
5	.	157044627	NA	NA	AAGAAAGAAAGAAAGAAAG	A	0	371	NA	NA	GATK_FAIL
5	.	157044628	0.7443	0.08503	G	A	0.01499	367	0.01075	0.965	GATK_FAIL
5	rs72166289	157044629	0.7426	0.08445	GAA	G	0.01892	370	-0.1747	0.4302	GATK_FAIL
5	rs72166289	157044629	NA	NA	G	GAA	0.004054	370	0.3815	0.45	GATK_FAIL
5	.	157044630	0.7479	0.08262	G	A	0.01348	371	-0.017	0.9467	GATK_FAIL
5	.	157044631	0.7501	0.08266	AAG	A	0.01613	372	0.1114	0.6376	GATK_FAIL
5	.	157044631	NA	NA	AAGAAAG	A	0.001344	372	-0.6253	0.474	GATK_FAIL
5	.	157044631	NA	NA	AAGAAAGAAAG	A	0.001344	372	1.38	0.1136	GATK_FAIL
5	.	157044632	0.7521	0.08224	G	A	0.01081	370	0.1045	0.7079	GATK_FAIL
5	.	157044633	0.3876	0.1209	GAA	G	0.04054	370	-0.04911	0.7449	GATK_FAIL
5	.	157044634	0.7522	0.08267	G	A	0.01087	368	0.104	0.7098	GATK_FAIL
5	rs375938849	157044635	NA	NA	AAG	A	0	364	NA	NA	GATK_PASS
5	rs375938849	157044635	NA	NA	AAGAAAG	A	0.001374	364	1.388	0.112	GATK_PASS
5	rs375938849	157044635	NA	NA	A	AAG	0.04396	364	-0.195	0.2275	GATK_PASS
5	.	157044636	NA	NA	G	A	0.001385	361	-0.6194	0.4801	GATK_FAIL
5	.	157044638	NA	NA	G	A	0.001381	362	-0.6177	0.4794	GATK_FAIL
5	.	157044639	NA	NA	AAG	A	0.002681	373	-0.6253	0.3114	GATK_FAIL
5	.	157044639	NA	NA	AAGAAAG	A	0.00134	373	-0.6237	0.4749	GATK_FAIL
5	.	157044639	NA	NA	AAGAAAGAAAG	A	0.004021	373	0.3811	0.4507	GATK_FAIL
5	.	157044640	NA	NA	G	A	0	374	NA	NA	GATK_FAIL
5	.	157044642	NA	NA	G	A	0	374	NA	NA	GATK_FAIL
5	.	157044643	NA	NA	A	AAGAAAG	0	374	NA	NA	GATK_PASS
5	.	157044644	NA	NA	G	A	0	374	NA	NA	GATK_FAIL
5	.	157044646	NA	NA	G	A	0	374	NA	NA	GATK_FAIL
5	rs371806408	157044647	NA	NA	A	AAG	0	374	NA	NA	GATK_PASS
5	.	157044648	NA	NA	G	A	0	374	NA	NA	GATK_FAIL
5	.	157044649	NA	NA	GAA	G	0	374	NA	NA	GATK_FAIL
5	.	157044649	NA	NA	GAAAGAA	G	0	374	NA	NA	GATK_FAIL
5	.	157044649	NA	NA	GAAAGAAAGAAAGAA	G	0	374	NA	NA	GATK_FAIL
5	.	157044651	NA	NA	A	AAG	0	374	NA	NA	GATK_FAIL
5	.	157044652	NA	NA	G	A	0	374	NA	NA	GATK_FAIL
5	.	157044662	NA	NA	G	A	0	374	NA	NA	GATK_FAIL
5	.	157044663	NA	NA	AAG	A	0	374	NA	NA	GATK_PASS
5	.	157044663	NA	NA	AAGAAAG	A	0	374	NA	NA	GATK_PASS
5	.	157044663	NA	NA	AAGAAAGAAAG	A	0	374	NA	NA	GATK_PASS
5	.	157044666	NA	NA	G	A	0	372	NA	NA	GATK_FAIL
5	.	157044669	NA	NA	G	GAAA	0.001337	374	1.381	0.1128	GATK_FAIL
5	rs199852996	157044670	NA	NA	G	A	0	352	NA	NA	GATK_PASS
5	rs200820786	157044672	NA	NA	G	A	0	343	NA	NA	GATK_FAIL
5	rs202038638	157044674	NA	NA	AGGGAGGG	A	0.00289	346	0.3924	0.528	GATK_FAIL
5	rs202038638	157044674	NA	NA	G	A	0.004335	346	0.7298	0.1507	GATK_FAIL
5	rs57641175;rs78632153;rs142603344	157044676	NA	NA	AGAAAGAAAGGAGGGAG	A	0.0107	374	-0.2534	0.4154	GATK_FAIL
5	rs57641175;rs78632153;rs142603344	157044676	-0.1317	0.5431	AGAAAGGAGGGAG	A	0.04813	374	0.06346	0.6427	GATK_FAIL
5	rs57641175;rs78632153;rs142603344	157044676	0.07446	0.5907	AGAAGGGAGGGAG	A	0.07754	374	0.01255	0.9047	GATK_FAIL
5	rs57641175;rs78632153;rs142603344	157044676	0.1203	0.3444	AGGAGGGAG	A	0.1457	374	0.03056	0.7241	GATK_FAIL
5	rs57641175;rs78632153;rs142603344	157044676	-0.2608	0.5465	AGGAGGGAGGGAG	A	0.01738	374	0.06194	0.7862	GATK_FAIL
5	rs57641175;rs78632153;rs142603344	157044676	NA	NA	G	A	0.008021	374	0.5525	0.1226	GATK_FAIL
5	.	157044678	NA	NA	A	G	0	373	NA	NA	GATK_FAIL
5	.	157044678	NA	NA	GGAGAGGA	G	0	373	NA	NA	GATK_FAIL
5	.	157044679	NA	NA	A	AGGG	0	373	NA	NA	GATK_FAIL
5	.	157044680	NA	NA	A	G	0	373	NA	NA	GATK_FAIL
5	.	157044682	NA	NA	A	G	0	373	NA	NA	GATK_PASS
5	.	157044684	NA	NA	A	G	0	373	NA	NA	GATK_FAIL
5	.	157044686	NA	NA	A	G	0	373	NA	NA	GATK_FAIL
5	.	157044686	NA	NA	GAGGGAGGGAGGA	G	0	373	NA	NA	GATK_FAIL
5	.	157044686	NA	NA	GAGGGAGGGAGGGAGGA	G	0.00134	373	-0.621	0.4754	GATK_FAIL
5	.	157044686	NA	NA	G	GAGGA	0.002681	373	-0.6226	0.312	GATK_FAIL
5	.	157044687	NA	NA	AG	A	0	374	NA	NA	GATK_FAIL
5	.	157044688	NA	NA	A	G	0	374	NA	NA	GATK_FAIL
5	rs76668590	157044690	NA	NA	AGGGAGGG	A	0	374	NA	NA	GATK_PASS
5	rs76668590	157044690	NA	NA	G	A	0	374	NA	NA	GATK_PASS
5	.	157044692	NA	NA	A	G	0	374	NA	NA	GATK_FAIL
5	.	157044696	NA	NA	A	G	0	374	NA	NA	GATK_FAIL
5	.	157044700	NA	NA	A	G	0	374	NA	NA	GATK_FAIL
5	.	157044772	NA	NA	G	A	0	374	NA	NA	GATK_PASS
5	rs71591085	157044800	NA	NA	G	A	0.006684	374	0.3821	0.3296	GATK_PASS
5	.	157044833	NA	NA	T	C	0	372	NA	NA	GATK_FAIL
5	rs183477074	157044839	NA	NA	C	G	0	160	NA	NA	GATK_FAIL
5	rs79924446	157044845	0.1542	0.2697	A	AG	0.1537	374	0.06379	0.4646	GATK_PASS
5	.	157044914	NA	NA	T	TAC	0.001337	374	0.378	0.6647	GATK_FAIL
5	.	157044971	NA	NA	ATG	A	0	374	NA	NA	GATK_PASS
5	.	157044971	NA	NA	A	ATG	0	374	NA	NA	GATK_PASS
5	rs190535609	157045014	NA	NA	T	A	0	374	NA	NA	GATK_PASS
5	.	157045042	NA	NA	G	A	0	374	NA	NA	GATK_PASS
5	.	157045061	NA	NA	A	C	0	374	NA	NA	GATK_PASS
5	rs73302560	157045082	NA	NA	C	T	0	374	NA	NA	GATK_PASS
5	rs149264425	157045112	NA	NA	T	G	0.005348	374	-0.1243	0.7764	GATK_PASS
5	rs6555820	157045138	-0.0421	0.5061	A	C	0.4933	374	-0.03723	0.561	GATK_PASS
5	.	157045144	NA	NA	C	T	0.002674	374	0.8817	0.1528	GATK_PASS
5	rs144483361	157045186	NA	NA	T	C	0	374	NA	NA	GATK_PASS
5	rs11374500	157045224	0.2316	0.02384	TA	T	0.2313	374	0.05514	0.4686	GATK_PASS
5	rs76586008	157045272	NA	NA	G	T	0	374	NA	NA	GATK_PASS
5	.	157045296	NA	NA	C	A	0	374	NA	NA	GATK_PASS
5	.	157045319	NA	NA	A	G	0.001337	374	1.381	0.1128	GATK_PASS
5	.	157045330	NA	NA	G	A	0	374	NA	NA	GATK_PASS
5	.	157045444	NA	NA	T	G	0	374	NA	NA	GATK_PASS
5	rs142133103	157045606	NA	NA	G	GC	0	374	NA	NA	GATK_PASS
5	rs147859844	157045616	-0.1384	0.7533	T	TA	0.02941	374	0.01295	0.9435	GATK_PASS
5	.	157045813	NA	NA	T	C	0	374	NA	NA	GATK_PASS
5	rs17054136	157045814	-0.3172	0.3002	A	G	0.04011	374	-0.2434	0.1156	GATK_PASS
5	.	157045846	NA	NA	G	GGATACAGC	0.001337	374	1.381	0.1128	GATK_FAIL
5	.	157045861	NA	NA	A	ACTGT	0	374	NA	NA	GATK_FAIL
5	rs17054137	157045919	0.02979	0.6799	A	G	0.3529	374	-0.008669	0.8969	GATK_PASS
5	rs185862683	157045964	NA	NA	G	A	0.001337	374	1.381	0.1128	GATK_PASS
5	.	157045998	NA	NA	A	G	0	374	NA	NA	GATK_PASS
5	rs35238000	157046037	NA	NA	A	G	0.005348	374	0.6338	0.1472	GATK_PASS
5	.	157046047	NA	NA	C	G	0.001337	374	0.378	0.6647	GATK_PASS
5	rs6555821	157046052	-0.03957	0.5331	A	G	0.492	374	-0.03405	0.5959	GATK_PASS
5	rs34124782	157046098	NA	NA	C	T	0.005348	374	0.6338	0.1472	GATK_PASS
5	rs6555822	157046174	0.1564	0.2627	A	G	0.1551	374	0.07731	0.3745	GATK_PASS
5	rs35931650	157046505	0.2332	0.02292	G	A	0.2299	374	0.05993	0.431	GATK_PASS
5	rs183551818	157046631	NA	NA	C	T	0.005348	374	-1.135	0.009205	GATK_PASS
5	rs140319355	157046645	NA	NA	T	C	0	374	NA	NA	GATK_PASS
5	rs115990453	157046662	NA	NA	G	A	0	374	NA	NA	GATK_PASS
5	rs149940570	157046684	NA	NA	T	C	0	374	NA	NA	GATK_PASS
5	rs145756941	157046702	NA	NA	G	C	0.009358	374	-0.1981	0.551	GATK_PASS
5	.	157046740	NA	NA	T	TG	0	374	NA	NA	GATK_PASS
5	rs116311546	157046752	NA	NA	T	C	0	374	NA	NA	GATK_PASS
5	rs55980520	157046892	-0.3521	0.4137	T	C	0.01872	374	-0.3697	0.09432	GATK_PASS
5	rs62382456	157046893	0.2352	0.0218	A	G	0.2286	374	0.06473	0.3951	GATK_PASS
5	rs140636423	157046914	NA	NA	C	T	0.001337	374	0.378	0.6647	GATK_PASS
5	rs73302570	157046964	NA	NA	C	T	0	374	NA	NA	GATK_PASS
5	rs114792220	157046992	NA	NA	A	T	0	374	NA	NA	GATK_PASS
5	rs182485286	157047040	NA	NA	T	C	0	374	NA	NA	GATK_PASS
5	rs145615359	157047052	NA	NA	G	A	0	374	NA	NA	GATK_PASS
5	.	157047110	NA	NA	C	T	0	374	NA	NA	GATK_PASS
5	.	157047165	NA	NA	A	G	0.001337	374	-0.6247	0.4737	GATK_PASS
5	rs187174499	157047244	NA	NA	C	T	0	374	NA	NA	GATK_PASS
5	rs191231039	157047280	NA	NA	A	G	0	374	NA	NA	GATK_PASS
5	rs141394251	157047347	NA	NA	C	T	0.01738	374	-0.4063	0.09779	GATK_PASS
5	.	157047408	NA	NA	A	G	0	374	NA	NA	GATK_PASS
5	rs12520950	157047458	NA	NA	A	G	0.005348	374	0.6338	0.1472	GATK_PASS
5	rs11134521	157047508	-0.03957	0.5331	C	T	0.492	374	-0.03405	0.5959	GATK_PASS
5	rs115034727	157047527	NA	NA	T	G	0	374	NA	NA	GATK_PASS
5	rs143885432;rs58433209	157047552	NA	NA	CA	C	0	374	NA	NA	GATK_PASS
5	rs143885432;rs58433209	157047552	0.02477	0.7339	C	CA	0.3516	374	-0.01099	0.87	GATK_PASS
5	rs202222796	157047565	NA	NA	G	A	0	374	NA	NA	GATK_PASS
5	.	157047594	NA	NA	T	C	0	374	NA	NA	GATK_PASS
5	.	157047616	NA	NA	T	G	0	374	NA	NA	GATK_PASS
5	rs114169892	157047657	NA	NA	C	T	0	374	NA	NA	GATK_PASS
5	.	157047726	NA	NA	C	T	0.001337	374	1.381	0.1128	GATK_PASS
5	rs185123947	157047879	NA	NA	T	C	0.002674	374	-1.129	0.0669	GATK_PASS
5	rs189039421	157047896	NA	NA	A	C	0	374	NA	NA	GATK_PASS
5	rs76408596	157047915	NA	NA	A	G	0	374	NA	NA	GATK_PASS
5	.	157047963	NA	NA	T	C	0	374	NA	NA	GATK_PASS
5	.	157048085	NA	NA	C	T	0	374	NA	NA	GATK_PASS
5	.	157048144	NA	NA	T	TA	0.001337	374	1.381	0.1128	GATK_PASS
5	rs1039439	157048162	-0.03957	0.5331	G	A	0.492	374	-0.03405	0.5959	GATK_PASS
5	rs374271376	157048191	NA	NA	C	G	0	374	NA	NA	GATK_PASS
5	.	157048222	NA	NA	A	G	0	374	NA	NA	GATK_PASS
5	rs148383505	157048312	NA	NA	C	A	0.0107	374	-0.2534	0.4154	GATK_PASS
5	rs78342131	157048371	NA	NA	G	T	0	374	NA	NA	GATK_PASS
5	rs7706174	157048387	0.2352	0.0218	G	T	0.2286	374	0.06473	0.3951	GATK_PASS
5	.	157048407	NA	NA	G	T	0	374	NA	NA	GATK_PASS
5	rs35159031	157048419	-0.19	0.0448	C	T	0.258	374	-0.1237	0.09308	GATK_PASS
5	rs188810293	157048431	NA	NA	G	C	0	374	NA	NA	GATK_PASS
5	.	157048452	NA	NA	A	AC	0.001337	374	-0.6247	0.4737	GATK_PASS
5	.	157048456	NA	NA	G	C	0	374	NA	NA	GATK_PASS
5	rs141511979	157048498	NA	NA	G	C	0	374	NA	NA	GATK_PASS
5	rs150888202	157048613	NA	NA	A	G	0	374	NA	NA	GATK_FAIL
5	.	157048620	NA	NA	A	G	0	374	NA	NA	GATK_PASS
5	rs372201380	157048626	NA	NA	T	C	0	374	NA	NA	GATK_PASS
5	.	157048635	NA	NA	T	C	0.001337	374	0.378	0.6647	GATK_PASS
5	rs13158874	157048670	NA	NA	G	A	0.005348	374	0.6338	0.1472	GATK_PASS
5	rs62382457	157048691	NA	NA	A	G	0.02941	374	-0.1307	0.4947	GATK_PASS
5	.	157048698	NA	NA	T	C	0	374	NA	NA	GATK_PASS
5	rs190441605	157048699	NA	NA	A	G	0	374	NA	NA	GATK_PASS
5	.	157048702	NA	NA	T	C	0.001337	374	-0.6247	0.4737	GATK_PASS
5	rs374380400	157048708	NA	NA	C	T	0	374	NA	NA	GATK_PASS
5	.	157048723	NA	NA	A	G	0.001337	374	1.381	0.1128	GATK_PASS
5	.	157048747	NA	NA	A	G	0.001337	374	-0.6247	0.4737	GATK_PASS
5	.	157048771	NA	NA	G	A	0	374	NA	NA	GATK_PASS
5	.	157048784	NA	NA	T	C	0	374	NA	NA	GATK_PASS
5	.	157048786	NA	NA	C	T	0	374	NA	NA	GATK_PASS
5	rs57910107	157048818	0.02979	0.6799	G	A	0.3529	374	-0.008669	0.8969	GATK_PASS
5	rs13163099	157048826	NA	NA	G	T	0.005348	374	0.6338	0.1472	GATK_PASS
5	rs201395256	157048841	NA	NA	A	G	0.001377	363	1.373	0.1169	GATK_PASS
5	rs57620461;rs67958032;rs71991548	157048844	NA	NA	AAC	A	0.02941	374	-0.179	0.3495	GATK_PASS
5	rs57620461;rs67958032;rs71991548	157048844	NA	NA	AACAC	A	0.001337	374	-0.6247	0.4737	GATK_PASS
5	rs57620461;rs67958032;rs71991548	157048844	0.1186	0.2892	AAC	A	0.1858	374	0.05366	0.5008	GATK_PASS
5	rs57620461;rs67958032;rs71991548	157048844	NA	NA	A	AACAC	0.001337	374	1.381	0.1128	GATK_PASS
5	rs138006717	157048889	NA	NA	C	G	0	374	NA	NA	GATK_FAIL
5	rs138006717	157048889	NA	NA	G	GGTAGATATTT	0	374	NA	NA	GATK_FAIL
5	.	157048974	NA	NA	C	A	0.001337	374	-0.6247	0.4737	GATK_PASS
5	rs375919936	157048995	NA	NA	C	G	0.001337	374	-0.6247	0.4737	GATK_PASS
5	.	157049030	NA	NA	A	G	0.001337	374	1.381	0.1128	GATK_PASS
5	.	157049041	NA	NA	C	T	0	374	NA	NA	GATK_PASS
5	.	157049169	NA	NA	G	T	0	374	NA	NA	GATK_PASS
5	rs115124184	157049318	NA	NA	A	G	0	374	NA	NA	GATK_PASS
5	.	157049428	NA	NA	C	T	0.001337	374	0.378	0.6647	GATK_PASS
5	.	157049448	NA	NA	C	T	0.001337	374	-0.6247	0.4737	GATK_PASS
5	.	157049491	NA	NA	A	G	0	374	NA	NA	GATK_PASS
5	rs115797909	157049492	NA	NA	A	G	0	374	NA	NA	GATK_PASS
5	rs111963586	157049520	NA	NA	T	C	0	374	NA	NA	GATK_PASS
5	rs13168195	157049534	NA	NA	C	T	0.005348	374	0.6338	0.1472	GATK_PASS
5	.	157049566	NA	NA	C	G	0	374	NA	NA	GATK_PASS
5	rs149316195	157049597	NA	NA	T	C	0	374	NA	NA	GATK_PASS
5	rs144594748	157049627	NA	NA	C	G	0	374	NA	NA	GATK_PASS
5	rs1039438	157049759	-0.1779	0.06562	A	G	0.2567	374	-0.1209	0.1031	GATK_PASS
5	.	157049782	NA	NA	A	AC	0.001337	374	1.381	0.1128	GATK_PASS
5	rs72805160	157049873	NA	NA	T	C	0.03342	374	-0.06751	0.7081	GATK_PASS
5	rs142615547	157049882	NA	NA	A	G	0.006684	374	-0.226	0.5643	GATK_PASS
5	.	157049896	NA	NA	C	T	0	374	NA	NA	GATK_PASS
5	rs185343125	157049944	NA	NA	G	A	0	374	NA	NA	GATK_PASS
5	.	157050109	NA	NA	G	C	0	374	NA	NA	GATK_PASS
5	.	157050121	NA	NA	A	C	0	374	NA	NA	GATK_PASS
5	.	157050181	NA	NA	A	G	0	374	NA	NA	GATK_PASS
5	rs146486739	157050197	NA	NA	G	C	0.001337	374	-0.6247	0.4737	GATK_PASS
5	.	157050227	NA	NA	A	G	0.002674	374	-0.1237	0.8413	GATK_PASS
5	.	157050269	NA	NA	A	C	0.001337	374	-0.6247	0.4737	GATK_PASS
5	rs374606429	157050279	NA	NA	C	T	0	374	NA	NA	GATK_PASS
5	rs116044202	157050313	NA	NA	A	T	0	374	NA	NA	GATK_PASS
5	.	157050354	NA	NA	G	C	0	374	NA	NA	GATK_PASS
5	.	157050385	NA	NA	G	T	0.001337	374	0.378	0.6647	GATK_PASS
5	rs953569	157050389	-0.05199	0.4134	G	T	0.4866	374	-0.04773	0.4574	GATK_PASS
5	.	157050463	NA	NA	C	G	0.001337	374	-0.6247	0.4737	GATK_PASS
5	rs1393209	157050529	0.1564	0.2627	G	A	0.1551	374	0.07731	0.3745	GATK_PASS
5	rs953568	157050621	0.04332	0.4945	T	A	0.484	374	0.03527	0.5831	GATK_PASS
5	rs146539436	157050692	NA	NA	G	A	0	374	NA	NA	GATK_PASS
5	.	157050697	NA	NA	G	A	0	374	NA	NA	GATK_PASS
5	rs1393208	157050714	0.1564	0.2627	G	A	0.1551	374	0.07731	0.3745	GATK_PASS
5	.	157050758	NA	NA	C	T	0	374	NA	NA	GATK_PASS
5	rs17573010	157050820	0.1055	0.8072	A	G	0.04011	374	-0.02331	0.8842	GATK_PASS
5	rs370763561	157050870	NA	NA	T	C	0	374	NA	NA	GATK_PASS
5	.	157050956	NA	NA	C	T	0	374	NA	NA	GATK_PASS
5	rs72805164	157051001	NA	NA	G	C	0.04144	374	0.2	0.2203	GATK_PASS
5	rs10780113	157051012	0.05508	0.3875	T	A	0.4893	374	0.04941	0.4441	GATK_PASS
5	rs141198481	157051055	NA	NA	T	C	0	374	NA	NA	GATK_PASS
5	.	157051159	NA	NA	C	T	0	374	NA	NA	GATK_PASS
5	.	157051230	NA	NA	G	A	0	374	NA	NA	GATK_PASS
5	rs192799158	157051309	NA	NA	C	G	0.004011	374	0.7161	0.1556	GATK_PASS
5	rs7718094	157051389	NA	NA	G	A	0	374	NA	NA	GATK_PASS
5	.	157051471	NA	NA	T	G	0.001337	374	-0.6247	0.4737	GATK_PASS
5	.	157051527	NA	NA	G	A	0.001337	374	0.378	0.6647	GATK_PASS
5	.	157051535	NA	NA	TTC	T	0	374	NA	NA	GATK_FAIL
5	rs142009332	157051541	NA	NA	TTTCTC	T	0	374	NA	NA	GATK_PASS
5	.	157051602	NA	NA	T	C	0	374	NA	NA	GATK_PASS
5	rs373730229	157051620	NA	NA	T	TCCCGGC	0	374	NA	NA	GATK_FAIL
5	rs13155337	157051623	NA	NA	T	C	0.005348	374	0.6338	0.1472	GATK_PASS
5	rs7702877	157051633	0.03531	0.6409	T	C	0.3289	374	-0.007654	0.9103	GATK_PASS
5	rs72805166	157051693	NA	NA	A	G	0.04011	374	0.2287	0.1673	GATK_PASS
5	.	157051695	NA	NA	C	CA	0.001337	374	-0.6247	0.4737	GATK_FAIL
5	.	157051738	NA	NA	A	G	0.001337	374	0.378	0.6647	GATK_FAIL
5	rs7726556	157051769	-0.1652	0.06678	A	T	0.2821	374	-0.1212	0.09431	GATK_PASS
5	rs115092903	157051874	NA	NA	C	T	0	374	NA	NA	GATK_PASS
5	rs188006965	157051961	NA	NA	C	T	0	374	NA	NA	GATK_PASS
5	rs1553319	157051990	0.1564	0.2627	T	A	0.1551	374	0.07731	0.3745	GATK_PASS
5	rs375843628	157052036	NA	NA	C	A	0.001337	374	0.378	0.6647	GATK_PASS
5	rs184591726	157052076	NA	NA	T	C	0	374	NA	NA	GATK_PASS
5	rs73815911	157052103	NA	NA	T	C	0	374	NA	NA	GATK_PASS
5	.	157052154	NA	NA	A	G	0	374	NA	NA	GATK_PASS
5	rs2279804	157052193	0.04332	0.4945	C	T	0.484	374	0.03527	0.5831	GATK_PASS
5	rs143737205	157052197	NA	NA	C	T	0	374	NA	NA	GATK_PASS
5	rs138484073	157052210	NA	NA	G	T	0	374	NA	NA	GATK_FAIL
5	rs143486699	157052213	NA	NA	A	G	0	374	NA	NA	GATK_PASS
5	rs1553318	157052312	NA	NA	A	G	0.005348	374	0.6338	0.1472	GATK_PASS
5	rs1553318	157052312	0.1382	0.04462	G	C	0.389	374	0.1072	0.1034	GATK_PASS
5	rs1553317	157052413	0.1564	0.2627	A	C	0.1551	374	0.07731	0.3745	GATK_PASS
5	rs12522248	157052415	-0.1652	0.06678	C	T	0.2821	374	-0.1212	0.09431	GATK_PASS
5	.	157052416	NA	NA	C	T	0	374	NA	NA	GATK_PASS
5	.	157052430	NA	NA	T	C	0	367	NA	NA	GATK_FAIL
5	rs45439103	157052432	0.2352	0.0218	C	CTTG	0.2286	374	0.06473	0.3951	GATK_PASS
5	rs115924839	157052453	NA	NA	A	G	0	374	NA	NA	GATK_PASS
5	rs116277815	157052467	NA	NA	A	G	0	374	NA	NA	GATK_PASS
5	rs201598799	157052471	NA	NA	A	G	0.001337	374	-0.6247	0.4737	GATK_PASS
5	rs115419803	157052476	NA	NA	G	C	0.002674	374	0.379	0.5393	GATK_PASS
5	rs115419803	157052476	NA	NA	T	C	0	374	NA	NA	GATK_PASS
5	rs73815912	157052477	NA	NA	A	G	0	374	NA	NA	GATK_PASS
5	.	157052478	NA	NA	C	T	0	374	NA	NA	GATK_PASS
5	rs1553316	157052498	0.1564	0.2627	A	G	0.1551	374	0.07731	0.3745	GATK_PASS
5	.	157052506	NA	NA	C	CGTT	0	374	NA	NA	GATK_FAIL
5	rs61734035	157052513	NA	NA	A	G	0	374	NA	NA	GATK_PASS
5	rs61734035	157052513	NA	NA	T	G	0.001337	374	-0.6247	0.4737	GATK_PASS
5	rs184276926	157052515	NA	NA	C	T	0	374	NA	NA	GATK_PASS
5	rs199928074	157052545	NA	NA	T	C	0	373	NA	NA	GATK_PASS
5	rs6149307;rs141023871	157052546	0.1368	0.0397	GTTGGAACAGTCGTCA	G	0.4115	373	0.1066	0.09979	GATK_PASS
5	rs10068551;rs139041445;rs77147640	157052557	0.2168	0.01695	CGTT	C	0.258	374	0.07505	0.3018	GATK_FAIL
5	rs10068551;rs139041445;rs77147640	157052557	NA	NA	T	C	0	374	NA	NA	GATK_FAIL
5	rs200642665	157052568	NA	NA	T	C	0	374	NA	NA	GATK_PASS
5	rs61734032	157052578	NA	NA	T	C	0	374	NA	NA	GATK_PASS
5	rs199527556	157052644	NA	NA	T	C	0	374	NA	NA	GATK_PASS
5	rs186161051	157052782	NA	NA	G	A	0.004011	374	-0.292	0.563	GATK_PASS
5	rs139175107	157052902	NA	NA	T	C	0.002674	374	-0.6263	0.3101	GATK_PASS
5	rs149539116	157052935	NA	NA	A	G	0.01337	374	0.1819	0.5147	GATK_PASS
5	.	157052986	NA	NA	G	C	0	374	NA	NA	GATK_PASS
5	rs6555824	157053073	0.1564	0.2627	C	T	0.1551	374	0.07731	0.3745	GATK_PASS
5	.	157053085	NA	NA	T	A	0	374	NA	NA	GATK_PASS
5	rs4704733	157053093	0.1615	0.2475	T	G	0.1604	374	0.1009	0.2428	GATK_PASS
5	rs75090038	157053113	NA	NA	A	G	0	374	NA	NA	GATK_PASS
5	rs139931710	157053124	NA	NA	T	C	0	374	NA	NA	GATK_PASS
5	rs80028113	157053196	0.08634	0.7301	T	C	0.0914	372	0.1366	0.2187	GATK_PASS
5	rs11386906	157053210	0.1564	0.2627	A	AG	0.1551	374	0.07731	0.3745	GATK_PASS
5	rs373995474	157053370	NA	NA	A	G	0	374	NA	NA	GATK_PASS
5	rs10654856;rs10667358;rs67159574	157053382	NA	NA	TA	T	0.006702	373	0.3804	0.332	GATK_PASS
5	rs10654856;rs10667358;rs67159574	157053382	-0.08676	0.2992	TAA	T	0.2882	373	-0.08037	0.2535	GATK_PASS
5	rs10654856;rs10667358;rs67159574	157053382	0.005733	0.9347	TAAA	T	0.3566	373	-0.01212	0.8527	GATK_PASS
5	rs10654856;rs10667358;rs67159574	157053382	0.2435	0.05551	TAAAA	T	0.1836	373	0.01284	0.8769	GATK_PASS
5	rs10654856;rs10667358;rs67159574	157053382	NA	NA	TAAAAA	T	0.01072	373	0.3836	0.2177	GATK_PASS
5	rs4704734	157053395	0.1623	0.245	G	A	0.1595	373	0.1056	0.223	GATK_PASS
5	.	157053408	NA	NA	T	G	0.004011	374	-0.292	0.563	GATK_FAIL
5	rs77682505	157053477	NA	NA	C	T	0.005348	374	0.6338	0.1472	GATK_PASS
5	.	157053522	NA	NA	A	G	0.001337	374	-0.6247	0.4737	GATK_PASS
5	.	157053598	NA	NA	A	G	0	374	NA	NA	GATK_PASS
5	.	157053635	NA	NA	T	C	0	374	NA	NA	GATK_PASS
5	rs11134525	157053637	0.1353	0.04957	A	T	0.3904	374	0.1039	0.1149	GATK_PASS
5	rs71591086	157053741	NA	NA	A	G	0.005348	374	0.6338	0.1472	GATK_PASS
5	.	157053783	NA	NA	C	T	0	374	NA	NA	GATK_PASS
5	rs113592722	157053824	NA	NA	T	C	0	374	NA	NA	GATK_PASS
5	rs185887000	157053825	NA	NA	A	G	0.001337	374	1.381	0.1128	GATK_PASS
5	rs140582515	157053832	NA	NA	C	T	0.02406	374	-0.01248	0.9527	GATK_PASS
5	.	157053869	NA	NA	CA	C	0	374	NA	NA	GATK_PASS
5	.	157053890	NA	NA	A	C	0.001337	374	-0.6247	0.4737	GATK_PASS
5	rs11134526	157054002	-0.1568	0.08722	A	G	0.2794	374	-0.128	0.07902	GATK_PASS
5	.	157054025	NA	NA	G	A	0.001337	374	1.381	0.1128	GATK_PASS
5	.	157054041	NA	NA	A	G	0	374	NA	NA	GATK_PASS
5	.	157054052	NA	NA	C	T	0.001337	374	1.381	0.1128	GATK_PASS
5	rs181247938	157054152	NA	NA	T	C	0	374	NA	NA	GATK_PASS
5	.	157054185	NA	NA	A	C	0.004011	374	-0.292	0.563	GATK_FAIL
5	.	157054190	NA	NA	A	C	0.05348	374	-0.2217	0.1276	GATK_PASS
5	.	157054190	NA	NA	CA	C	0.06551	374	0.1285	0.3353	GATK_PASS
5	.	157054190	NA	NA	CAA	C	0.02005	374	0.1149	0.6165	GATK_PASS
5	.	157054190	NA	NA	C	CA	0.001337	374	1.381	0.1128	GATK_PASS
5	.	157054192	NA	NA	AAG	A	0	374	NA	NA	GATK_FAIL
5	.	157054211	NA	NA	C	A	0	374	NA	NA	GATK_FAIL
5	rs74762647	157054214	NA	NA	A	C	0.0254	374	-0.2682	0.1905	GATK_FAIL
5	.	157054237	NA	NA	T	C	0	374	NA	NA	GATK_FAIL
5	.	157054336	NA	NA	T	C	0	374	NA	NA	GATK_PASS
5	rs1979870	157054372	0.1564	0.2627	T	C	0.1551	374	0.07731	0.3745	GATK_PASS
5	rs147711928	157054490	NA	NA	A	G	0	374	NA	NA	GATK_PASS
5	rs138721003	157054705	NA	NA	A	G	0.006684	374	0.5848	0.1353	GATK_PASS
5	rs114608070	157054774	NA	NA	T	C	0	374	NA	NA	GATK_PASS
5	.	157054787	NA	NA	C	T	0.001337	374	1.381	0.1128	GATK_PASS
5	rs149272224	157054953	NA	NA	A	C	0	374	NA	NA	GATK_PASS
5	.	157054977	NA	NA	A	C	0	374	NA	NA	GATK_PASS
5	.	157055058	NA	NA	G	A	0.001337	374	-0.6247	0.4737	GATK_PASS
5	rs2270925	157055088	0.1382	0.04462	T	C	0.389	374	0.1072	0.1034	GATK_PASS
5	rs2270924	157055090	0.1382	0.04462	A	T	0.389	374	0.1072	0.1034	GATK_PASS
5	rs187751319	157055099	NA	NA	T	C	0.002674	374	0.8817	0.1528	GATK_PASS
5	.	157055263	NA	NA	T	C	0	374	NA	NA	GATK_PASS
5	rs56084311	157055285	NA	NA	G	C	0.0107	374	0.1298	0.6767	GATK_PASS
5	rs191117891	157055376	NA	NA	A	G	0.002674	374	-0.6263	0.3101	GATK_PASS
5	rs2270922	157055428	NA	NA	A	G	0	374	NA	NA	GATK_PASS
5	rs61734029	157055430	NA	NA	A	G	0	374	NA	NA	GATK_PASS
5	.	157055431	NA	NA	CCT	C	0	374	NA	NA	GATK_PASS
5	rs141773914	157055435	NA	NA	G	T	0.004011	374	0.04403	0.9305	GATK_PASS
5	rs201914430	157055447	NA	NA	C	T	0	374	NA	NA	GATK_PASS
5	rs1809941	157055448	0.1561	0.2637	G	T	0.1551	374	0.07731	0.3745	GATK_PASS
5	.	157055555	NA	NA	C	CTG	0.002674	374	0.379	0.5393	GATK_FAIL
5	.	157055572	NA	NA	G	C	0.001337	374	0.378	0.6647	GATK_PASS
5	.	157055602	NA	NA	G	A	0	374	NA	NA	GATK_PASS
5	rs146024736	157055603	NA	NA	T	C	0.005348	374	-0.6297	0.1498	GATK_PASS
5	rs870581	157055658	-0.02202	0.7547	A	G	0.3503	374	-0.01261	0.8475	GATK_PASS
5	.	157055694	NA	NA	A	G	0.001337	374	1.381	0.1128	GATK_PASS
5	rs116459360	157055700	NA	NA	G	T	0	374	NA	NA	GATK_PASS
5	rs200397976	157055703	NA	NA	TA	T	0.004011	374	0.04403	0.9305	GATK_PASS
5	.	157055832	NA	NA	T	TC	0	374	NA	NA	GATK_FAIL
5	rs66978480	157055873	NA	NA	CA	C	0.001337	374	-0.6247	0.4737	GATK_PASS
5	rs66978480	157055873	-0.1774	0.0664	C	CA	0.2553	374	-0.1018	0.1701	GATK_PASS
5	rs28446302	157055874	NA	NA	C	A	0.001337	374	0.378	0.6647	GATK_FAIL
5	.	157055875	NA	NA	C	A	0	321	NA	NA	GATK_FAIL
5	.	157055917	NA	NA	TA	T	0.001337	374	0.378	0.6647	GATK_FAIL
5	.	157055925	NA	NA	C	T	0	374	NA	NA	GATK_PASS
5	rs138778249	157055966	NA	NA	G	A	0	374	NA	NA	GATK_PASS
5	.	157055981	NA	NA	T	C	0.001337	374	-0.6247	0.4737	GATK_PASS
5	.	157055995	NA	NA	A	G	0.001337	374	-0.6247	0.4737	GATK_PASS
5	.	157055998	NA	NA	C	G	0.001337	374	-0.6247	0.4737	GATK_PASS
5	.	157056023	NA	NA	A	C	0	374	NA	NA	GATK_PASS
5	.	157056036	NA	NA	A	G	0	374	NA	NA	GATK_PASS
5	rs141733207	157056058	NA	NA	C	T	0	374	NA	NA	GATK_PASS
5	rs4073552	157056182	-0.01959	0.7759	C	A	0.3516	374	-0.01015	0.8751	GATK_PASS
5	.	157056193	NA	NA	A	G	0	374	NA	NA	GATK_PASS
5	.	157056203	NA	NA	C	T	0	374	NA	NA	GATK_PASS
5	.	157056281	NA	NA	A	T	0	363	NA	NA	GATK_FAIL
5	rs139106057	157056287	0.1995	0.09164	AT	A	0.1885	374	0.03589	0.6574	GATK_PASS
5	.	157056330	NA	NA	T	C	0	374	NA	NA	GATK_PASS
5	rs35399916;rs5741954	157056385	-0.15	0.09003	CT	C	0.2741	374	-0.1003	0.1625	GATK_PASS
5	rs35399916;rs5741954	157056385	-0.0438	0.527	C	CT	0.3489	374	-0.03097	0.6324	GATK_PASS
5	.	157056437	NA	NA	C	T	0	374	NA	NA	GATK_PASS
5	.	157056440	NA	NA	C	T	0	374	NA	NA	GATK_PASS
5	.	157056442	NA	NA	C	T	0	374	NA	NA	GATK_PASS
5	rs4073553	157056491	NA	NA	T	C	0	374	NA	NA	GATK_PASS
5	rs193192832	157056492	NA	NA	A	G	0.0361	374	0.2067	0.2344	GATK_PASS
5	rs201194000	157056501	NA	NA	T	TC	0	374	NA	NA	GATK_PASS
5	rs184740965	157056521	NA	NA	G	A	0	374	NA	NA	GATK_PASS
5	rs369342361	157056532	NA	NA	A	G	0.002674	374	0.8817	0.1528	GATK_PASS
5	.	157056536	NA	NA	T	C	0.001337	374	0.378	0.6647	GATK_PASS
5	.	157056546	NA	NA	AT	A	0	374	NA	NA	GATK_FAIL
5	.	157056546	NA	NA	A	AT	0	374	NA	NA	GATK_FAIL
5	rs375772845	157056582	NA	NA	G	A	0.001337	374	0.378	0.6647	GATK_PASS
5	.	157056587	NA	NA	G	A	0	374	NA	NA	GATK_PASS
5	.	157056597	NA	NA	A	G	0	374	NA	NA	GATK_PASS
5	.	157056602	NA	NA	A	G	0.001337	374	0.378	0.6647	GATK_PASS
5	rs71591087	157056605	-0.3464	0.1113	C	T	0.0615	374	-0.2412	0.05363	GATK_PASS
5	.	157056613	NA	NA	T	C	0.001337	374	0.378	0.6647	GATK_PASS
5	.	157056615	NA	NA	T	C	0	374	NA	NA	GATK_PASS
5	.	157056622	NA	NA	C	T	0	374	NA	NA	GATK_PASS
5	rs373981853	157056631	NA	NA	C	T	0	374	NA	NA	GATK_PASS
5	.	157056669	NA	NA	T	C	0.001337	374	1.381	0.1128	GATK_PASS
5	rs4704838	157056670	-0.0007631	0.9907	G	A	0.4024	374	0.01342	0.8342	GATK_PASS
5	.	157056672	NA	NA	A	G	0.001337	374	-0.6247	0.4737	GATK_FAIL
5	.	157056676	NA	NA	A	G	0	374	NA	NA	GATK_PASS
5	rs183708128	157056695	NA	NA	C	T	0	374	NA	NA	GATK_PASS
5	.	157056720	NA	NA	AT	A	0.001337	374	-0.6247	0.4737	GATK_FAIL
5	.	157056728	NA	NA	C	G	0.001337	374	0.378	0.6647	GATK_PASS
5	rs189155948	157056815	NA	NA	G	A	0.002674	374	0.379	0.5393	GATK_PASS
5	rs181907222	157056819	NA	NA	T	C	0.006684	374	-0.02331	0.9526	GATK_PASS
5	rs149800237	157056966	NA	NA	T	G	0	374	NA	NA	GATK_PASS
5	rs10073683	157056982	0.1244	0.3962	A	G	0.1471	374	0.04674	0.5996	GATK_PASS
5	.	157057080	NA	NA	T	G	0.001337	374	1.381	0.1128	GATK_PASS
5	.	157057083	NA	NA	A	G	0.001337	374	-0.6247	0.4737	GATK_PASS
5	.	157057107	NA	NA	A	G	0	374	NA	NA	GATK_PASS
5	.	157057151	NA	NA	T	C	0	374	NA	NA	GATK_PASS
5	rs10066168	157057207	0.1256	0.3916	C	T	0.1457	374	0.05349	0.5489	GATK_PASS
5	rs10066231	157057272	0.1227	0.4032	C	T	0.1465	372	0.04974	0.5781	GATK_PASS
5	.	157057306	NA	NA	A	ACT	0	374	NA	NA	GATK_FAIL
5	.	157057351	NA	NA	A	G	0	374	NA	NA	GATK_PASS
5	rs140801641	157057362	NA	NA	AAG	A	0	374	NA	NA	GATK_FAIL
5	rs140801641	157057362	NA	NA	AAGAGAGAG	A	0	374	NA	NA	GATK_FAIL
5	rs140801641	157057362	NA	NA	AAGAGAGAGAGAG	A	0	374	NA	NA	GATK_FAIL
5	rs140801641	157057362	NA	NA	A	AAG	0	374	NA	NA	GATK_FAIL
5	rs140801641	157057362	NA	NA	A	AAGAG	0.001337	374	0.378	0.6647	GATK_FAIL
5	rs140801641	157057362	NA	NA	A	AAGAGAG	0	374	NA	NA	GATK_FAIL
5	.	157057378	NA	NA	G	GAGAGAGAGGAAAGAAAGAAA	0	374	NA	NA	GATK_FAIL
5	.	157057380	NA	NA	GGAA	G	0	374	NA	NA	GATK_FAIL
5	.	157057380	NA	NA	G	GA	0	374	NA	NA	GATK_FAIL
5	.	157057380	NA	NA	G	GAGAGAGGAAA	0	374	NA	NA	GATK_FAIL
5	.	157057380	NA	NA	G	GAGAGAGGAAAGAAA	0	374	NA	NA	GATK_FAIL
5	.	157057380	NA	NA	G	GAGAGAGGAAAGAAAGAAA	0	374	NA	NA	GATK_FAIL
5	.	157057380	NA	NA	G	GAGAGAGGAAAGAAAGAAAGAAA	0	374	NA	NA	GATK_FAIL
5	.	157057382	NA	NA	G	GAGAGGAAA	0.004011	374	0.7161	0.1556	GATK_PASS
5	.	157057382	NA	NA	G	GAGAGGAAAGAAA	0.01471	374	-0.07989	0.7644	GATK_PASS
5	.	157057382	0.2054	0.635	G	GAGAGGAAAGAAAGAAA	0.005348	374	0.08528	0.8111	GATK_PASS
5	.	157057382	NA	NA	G	GAGAGGAAAGAAAGAAAGAAA	0.002674	374	-1.129	0.0669	GATK_PASS
5	.	157057382	NA	NA	G	GAGAGGAAAGAAAGAAAGAAAGAAAGAAAGAAA	0.001337	374	0.378	0.6647	GATK_PASS
5	.	157057383	NA	NA	A	AG	0	374	NA	NA	GATK_FAIL
5	.	157057384	NA	NA	A	G	0	374	NA	NA	GATK_FAIL
5	.	157057384	NA	NA	G	GAGGAAAGAAA	0	374	NA	NA	GATK_FAIL
5	.	157057384	NA	NA	G	GAGGAAAGAAAGAAAGAAA	0	374	NA	NA	GATK_FAIL
5	.	157057384	NA	NA	G	GAGGAAAGAAAGAAAGAAAGAAAGAAA	0	374	NA	NA	GATK_FAIL
5	rs72258186	157057386	0.1081	0.4353	G	GGAAA	0.09299	371	0.07439	0.4552	GATK_PASS
5	rs72258186	157057386	0.04017	0.6117	G	GGAAAGAAA	0.2412	371	0.00985	0.8859	GATK_PASS
5	rs72258186	157057386	0.1093	0.1701	G	GGAAAGAAAGAAA	0.2089	371	0.05539	0.4257	GATK_PASS
5	rs72258186	157057386	0.008107	0.9284	G	GGAAAGAAAGAAAGAAA	0.1779	371	0.02296	0.759	GATK_PASS
5	rs72258186	157057386	0.2081	0.2849	G	GGAAAGAAAGAAAGAAAGAAA	0.07412	371	-0.04471	0.6982	GATK_PASS
5	rs72258186	157057386	-0.07698	0.7221	G	GGAAAGAAAGAAAGAAAGAAAGAAA	0.05795	371	-0.02185	0.8647	GATK_PASS
5	.	157057387	NA	NA	A	G	0	374	NA	NA	GATK_FAIL
5	.	157057387	NA	NA	G	GA	0.04813	374	-0.1054	0.4901	GATK_FAIL
5	.	157057388	NA	NA	G	A	0.04813	374	-0.1054	0.4901	GATK_FAIL
5	rs62382458	157057389	NA	NA	C	A	0	374	NA	NA	GATK_FAIL
5	rs62382458	157057389	NA	NA	G	A	0.04679	374	-0.08841	0.5674	GATK_FAIL
5	.	157057390	NA	NA	G	A	0.04692	373	-0.09028	0.5596	GATK_FAIL
5	.	157057391	NA	NA	G	GAA	0.001348	371	1.381	0.1124	GATK_FAIL
5	.	157057391	NA	NA	G	GAAA	0	371	NA	NA	GATK_FAIL
5	.	157057391	NA	NA	G	GAAAGAAA	0	371	NA	NA	GATK_FAIL
5	.	157057391	NA	NA	G	GAAAGAAAGAAA	0.04582	371	-0.1026	0.5121	GATK_FAIL
5	.	157057391	NA	NA	G	GAAAGAAAGAAAGAAA	0	371	NA	NA	GATK_FAIL
5	rs62381163	157057393	NA	NA	G	A	0.04545	374	-0.1029	0.511	GATK_FAIL
5	.	157057394	NA	NA	G	A	0.04545	374	-0.1029	0.511	GATK_FAIL
5	.	157057395	NA	NA	G	GAAA	0	363	NA	NA	GATK_FAIL
5	.	157057395	NA	NA	G	GAAAGAAA	0.04683	363	-0.09673	0.5377	GATK_FAIL
5	.	157057395	NA	NA	G	GAAAGAAAGAAA	0	363	NA	NA	GATK_FAIL
5	.	157057395	NA	NA	G	GAAAGAAAGAAAGAAA	0.001377	363	1.387	0.1114	GATK_FAIL
5	.	157057396	NA	NA	A	AAAGAAAG	0.0457	372	-0.09781	0.532	GATK_FAIL
5	.	157057397	NA	NA	C	A	0.0457	372	-0.09781	0.532	GATK_FAIL
5	.	157057397	NA	NA	G	A	0	372	NA	NA	GATK_FAIL
5	.	157057401	NA	NA	AAGAAAGAAAGAG	A	0.03887	373	-0.1481	0.3781	GATK_FAIL
5	.	157057403	NA	NA	GAAAGAAAT	G	0.02869	366	-0.2033	0.2955	GATK_FAIL
5	.	157057405	NA	NA	AAGAAAGAAAGAG	A	0.02681	373	-0.1789	0.3703	GATK_FAIL
5	.	157057405	NA	NA	G	A	0	373	NA	NA	GATK_FAIL
5	.	157057409	NA	NA	AAGAAAGAG	A	0.01877	373	-0.2724	0.2496	GATK_FAIL
5	.	157057409	NA	NA	G	A	0	373	NA	NA	GATK_FAIL
5	rs10050772	157057411	NA	NA	T	G	0.01075	372	-0.2514	0.4186	GATK_FAIL
5	.	157057413	NA	NA	AAGAG	A	0.01072	373	-0.2497	0.4214	GATK_FAIL
5	.	157057415	NA	NA	T	G	0	373	NA	NA	GATK_PASS
5	.	157057415	NA	NA	G	GAAAGAAAGAAAGAAAGA	0	373	NA	NA	GATK_PASS
5	rs151302728	157057419	NA	NA	T	G	0	374	NA	NA	GATK_PASS
5	.	157057423	NA	NA	T	G	0	374	NA	NA	GATK_PASS
5	.	157057427	NA	NA	T	G	0	374	NA	NA	GATK_PASS
5	.	157057445	NA	NA	A	AAGAAAGAAAGAAAGAAAGAG	0.001337	374	-0.6247	0.4737	GATK_PASS
5	.	157057451	NA	NA	G	GA	0.001337	374	-0.6247	0.4737	GATK_FAIL
5	.	157057455	NA	NA	G	GAAA	0.001337	374	-0.6247	0.4737	GATK_FAIL
5	.	157057461	NA	NA	A	AAG	0	374	NA	NA	GATK_PASS
5	rs67114357	157057469	0.02377	0.7737	C	T	0.3029	373	-0.0142	0.8402	GATK_PASS
5	rs114803443	157057470	NA	NA	A	G	0	374	NA	NA	GATK_PASS
5	rs75112798	157057600	NA	NA	C	T	0	374	NA	NA	GATK_PASS
5	rs4704839	157057615	0.1267	0.3874	A	T	0.1444	374	0.06029	0.5002	GATK_PASS
5	rs4704840	157057637	0.1256	0.3916	G	C	0.1457	374	0.05349	0.5489	GATK_PASS
5	rs73302593	157057789	NA	NA	T	C	0.004011	374	0.04403	0.9305	GATK_PASS
5	rs182096233	157057852	NA	NA	A	C	0.001337	374	0.378	0.6647	GATK_PASS
5	rs191484308	157057947	NA	NA	A	G	0	374	NA	NA	GATK_PASS
5	.	157057968	NA	NA	T	G	0	374	NA	NA	GATK_PASS
5	rs112079259	157057981	NA	NA	A	G	0	374	NA	NA	GATK_PASS
5	rs200455416	157058008	NA	NA	C	T	0	374	NA	NA	GATK_PASS
5	rs116771950	157058071	NA	NA	A	C	0	374	NA	NA	GATK_PASS
5	rs67960962	157058175	0.02331	0.7076	T	C	0.4786	374	0.01535	0.8064	GATK_PASS
5	.	157058221	NA	NA	T	C	0	374	NA	NA	GATK_PASS
5	.	157058238	NA	NA	C	G	0	374	NA	NA	GATK_PASS
5	rs114680098	157058291	NA	NA	T	C	0.01604	374	-0.2132	0.404	GATK_PASS
5	.	157058292	NA	NA	A	G	0	374	NA	NA	GATK_PASS
5	.	157058301	NA	NA	C	A	0	374	NA	NA	GATK_PASS
5	.	157058302	NA	NA	G	A	0	374	NA	NA	GATK_PASS
5	rs149029649	157058313	NA	NA	C	T	0.005348	374	0.1284	0.7694	GATK_PASS
5	rs144625732	157058330	NA	NA	G	A	0	374	NA	NA	GATK_PASS
5	.	157058334	NA	NA	T	C	0	374	NA	NA	GATK_PASS
5	rs34333511	157058357	NA	NA	T	A	0.005348	374	0.6338	0.1472	GATK_PASS
5	rs9313422	157058359	0.0259	0.67	C	G	0.4733	374	0.01212	0.8428	GATK_PASS
5	rs9313422	157058359	NA	NA	T	C	0	374	NA	NA	GATK_PASS
5	rs34819868	157058365	NA	NA	A	C	0.005348	374	0.6338	0.1472	GATK_PASS
5	.	157058420	NA	NA	A	G	0	374	NA	NA	GATK_PASS
5	rs183793800	157058424	NA	NA	A	G	0.008021	374	-0.2944	0.4113	GATK_PASS
5	.	157058449	NA	NA	A	G	0	374	NA	NA	GATK_PASS
5	.	157058486	NA	NA	C	CCG	0.001337	374	-0.6247	0.4737	GATK_FAIL
5	.	157058506	NA	NA	A	G	0	374	NA	NA	GATK_FAIL
5	.	157058520	NA	NA	C	G	0	374	NA	NA	GATK_PASS
5	rs192925104	157058560	NA	NA	A	G	0	374	NA	NA	GATK_PASS
5	.	157058581	NA	NA	A	AAAAAG	0.001337	374	0.378	0.6647	GATK_PASS
5	rs35045030	157058616	NA	NA	T	C	0.005348	374	0.6338	0.1472	GATK_PASS
5	.	157058733	NA	NA	C	CACA	0	374	NA	NA	GATK_PASS
5	rs113912488	157058866	NA	NA	C	T	0	374	NA	NA	GATK_PASS
5	rs62621083	157058920	NA	NA	T	C	0.005348	374	0.6338	0.1472	GATK_PASS
5	rs114704611	157058978	NA	NA	G	C	0	374	NA	NA	GATK_PASS
5	.	157058998	NA	NA	G	T	0	374	NA	NA	GATK_PASS
5	.	157058999	NA	NA	T	C	0	374	NA	NA	GATK_PASS
5	rs34349132	157059053	NA	NA	C	T	0.005348	374	0.6338	0.1472	GATK_PASS
5	.	157059066	NA	NA	T	G	0.001337	374	-0.6247	0.4737	GATK_PASS
5	rs139324173	157059068	NA	NA	A	G	0	374	NA	NA	GATK_PASS
5	.	157059077	NA	NA	T	G	0	374	NA	NA	GATK_PASS
5	rs6420075	157059109	0.03001	0.7758	G	C	0.1952	374	0.04834	0.5348	GATK_PASS
5	rs145349000	157059184	NA	NA	T	G	0	374	NA	NA	GATK_PASS
5	.	157059190	NA	NA	A	T	0.001337	374	1.381	0.1128	GATK_PASS
5	.	157059277	NA	NA	T	A	0	374	NA	NA	GATK_PASS
5	.	157059284	NA	NA	A	T	0	374	NA	NA	GATK_PASS
5	rs34789219	157059375	NA	NA	A	G	0.006684	374	0.3821	0.3296	GATK_PASS
5	rs41297579	157059397	-0.06724	0.6465	T	C	0.1551	374	-0.02313	0.7926	GATK_PASS
5	rs191470413	157059427	NA	NA	C	G	0.002674	374	-0.6263	0.3101	GATK_PASS
5	rs74795803	157059448	NA	NA	T	G	0	374	NA	NA	GATK_PASS
5	rs41297577	157059492	-0.0334	0.7858	G	C	0.1751	374	-0.01451	0.8606	GATK_PASS
5	rs41297575	157059512	NA	NA	C	T	0	374	NA	NA	GATK_PASS
5	.	157059543	NA	NA	T	C	0	374	NA	NA	GATK_PASS
5	rs7702919	157059580	0.03971	0.5477	T	C	0.3676	374	0.02944	0.6388	GATK_PASS
5	.	157059616	NA	NA	C	A	0	374	NA	NA	GATK_PASS
5	.	157059722	NA	NA	A	G	0.001337	374	-0.6247	0.4737	GATK_PASS
5	rs34583405	157059820	NA	NA	CA	C	0	374	NA	NA	GATK_PASS
5	rs13169177	157059875	NA	NA	A	G	0.005348	374	0.6338	0.1472	GATK_PASS
5	rs113854291	157059908	NA	NA	A	G	0	374	NA	NA	GATK_PASS
5	.	157059911	NA	NA	T	C	0.001337	374	-0.6247	0.4737	GATK_PASS
5	.	157059918	NA	NA	T	G	0.001337	374	-0.6247	0.4737	GATK_PASS
5	.	157059919	NA	NA	C	T	0.001337	374	1.381	0.1128	GATK_PASS
5	rs116445967	157059932	0.676	0.1173	A	T	0.0107	374	0.3069	0.269	GATK_PASS
5	.	157059935	NA	NA	A	T	0	374	NA	NA	GATK_PASS
5	.	157059966	NA	NA	G	A	0	374	NA	NA	GATK_PASS
5	.	157059972	NA	NA	T	C	0	374	NA	NA	GATK_PASS
5	rs185854357	157060019	NA	NA	A	C	0	374	NA	NA	GATK_PASS
5	.	157060098	NA	NA	G	A	0	374	NA	NA	GATK_PASS
5	rs200229739	157060218	NA	NA	AAAT	A	0.004032	372	-0.626	0.2156	GATK_PASS
5	rs200229739	157060218	NA	NA	A	AAAT	0	372	NA	NA	GATK_PASS
5	rs4704841	157060224	-0.02388	0.7215	C	T	0.3596	374	-0.008455	0.8942	GATK_PASS
5	.	157060295	NA	NA	CTA	C	0	374	NA	NA	GATK_PASS
5	.	157060377	NA	NA	T	C	0	374	NA	NA	GATK_PASS
5	.	157060391	NA	NA	T	C	0.001337	374	-1.627	0.06145	GATK_PASS
5	.	157060393	NA	NA	A	G	0	374	NA	NA	GATK_PASS
5	.	157060409	NA	NA	A	T	0	374	NA	NA	GATK_PASS
5	.	157060417	NA	NA	T	C	0	374	NA	NA	GATK_PASS
5	rs117307561	157060427	NA	NA	T	C	0	374	NA	NA	GATK_PASS
5	rs12516270	157060461	-0.06724	0.6465	A	G	0.1551	374	-0.02313	0.7926	GATK_PASS
5	rs60048040	157060478	NA	NA	T	C	0.005348	374	0.6338	0.1472	GATK_PASS
5	rs4704842	157060505	0.0402	0.5485	T	C	0.3596	374	0.03385	0.5926	GATK_PASS
5	rs150955659	157060542	NA	NA	G	C	0.006684	374	-0.02331	0.9526	GATK_PASS
5	rs140951191	157060621	NA	NA	T	C	0	374	NA	NA	GATK_PASS
5	rs180966204	157060622	NA	NA	A	G	0	374	NA	NA	GATK_PASS
5	.	157060655	NA	NA	T	C	0	374	NA	NA	GATK_PASS
5	.	157060656	NA	NA	A	G	0	374	NA	NA	GATK_PASS
5	rs12514515	157060772	NA	NA	A	T	0.004011	374	0.04403	0.9305	GATK_PASS
5	rs17573340	157060773	-0.152	0.2316	G	C	0.1444	374	-0.05241	0.5457	GATK_PASS
5	rs55712198	157060802	NA	NA	T	C	0.01738	374	-0.007884	0.9744	GATK_PASS
5	rs6863780	157060803	0.02497	0.7157	A	G	0.3476	374	0.02711	0.6718	GATK_PASS
5	.	157060825	NA	NA	A	G	0.001337	374	1.381	0.1128	GATK_PASS
5	.	157060845	NA	NA	GCCA	G	0	374	NA	NA	GATK_PASS
5	rs34856460	157060901	0.03971	0.5477	A	AT	0.3676	374	0.02944	0.6388	GATK_PASS
5	rs34856460	157060901	NA	NA	A	AT	0	374	NA	NA	GATK_PASS
5	rs112126568	157060936	0.07838	0.7543	T	C	0.07219	374	0.06433	0.5935	GATK_PASS
5	rs12516395	157060951	-0.06724	0.6465	A	G	0.1551	374	-0.02313	0.7926	GATK_PASS
5	.	157061045	NA	NA	A	G	0	374	NA	NA	GATK_PASS
5	rs183247171	157061046	NA	NA	T	C	0.001337	374	-0.6247	0.4737	GATK_PASS
5	rs138531256	157061047	NA	NA	A	G	0	374	NA	NA	GATK_PASS
5	.	157061185	NA	NA	A	G	0	374	NA	NA	GATK_PASS
5	.	157061283	NA	NA	C	CA	0.001337	374	-0.6247	0.4737	GATK_PASS
5	.	157061315	NA	NA	C	CAA	0.004011	374	1.052	0.03663	GATK_PASS
5	.	157061390	NA	NA	A	C	0	374	NA	NA	GATK_PASS
5	.	157061411	NA	NA	A	T	0	374	NA	NA	GATK_PASS
5	rs187018935	157061417	NA	NA	A	G	0	374	NA	NA	GATK_PASS
5	.	157061437	NA	NA	G	A	0	374	NA	NA	GATK_PASS
5	.	157061473	NA	NA	T	C	0.001337	374	-0.6247	0.4737	GATK_PASS
5	rs140375281	157061579	NA	NA	C	T	0	374	NA	NA	GATK_PASS
5	.	157061611	NA	NA	A	G	0	374	NA	NA	GATK_PASS
5	.	157061621	NA	NA	T	C	0	374	NA	NA	GATK_FAIL
5	.	157061622	NA	NA	A	G	0	374	NA	NA	GATK_PASS
5	rs13179469	157061632	NA	NA	A	G	0.009358	374	0.3842	0.2472	GATK_PASS
5	.	157061671	NA	NA	T	C	0.001337	374	-0.6247	0.4737	GATK_PASS
5	rs35095256;rs370857106	157061703	NA	NA	CA	C	0.01604	374	0.04512	0.8599	GATK_PASS
5	rs35095256;rs370857106	157061703	0.06766	0.2959	C	CAA	0.377	374	0.0472	0.4463	GATK_PASS
5	rs35095256;rs370857106	157061703	NA	NA	CAAA	C	0.004011	374	0.3801	0.4514	GATK_PASS
5	.	157061704	NA	NA	AAG	A	0	193	NA	NA	GATK_FAIL
5	.	157061717	NA	NA	C	T	0	374	NA	NA	GATK_PASS
5	.	157061743	NA	NA	A	G	0	374	NA	NA	GATK_PASS
5	.	157061759	NA	NA	A	G	0	374	NA	NA	GATK_PASS
5	rs113733334	157061838	NA	NA	C	T	0	374	NA	NA	GATK_PASS
5	rs13180943	157061870	NA	NA	A	C	0.009358	374	0.3842	0.2472	GATK_PASS
5	.	157061890	NA	NA	A	G	0	374	NA	NA	GATK_PASS
5	rs6873777	157061892	0.03901	0.5538	T	C	0.3636	374	0.02856	0.6477	GATK_PASS
5	rs76038918	157061919	NA	NA	G	A	0.02941	374	0.1108	0.5626	GATK_PASS
5	rs191755200	157062117	NA	NA	A	G	0	374	NA	NA	GATK_PASS
5	.	157062179	NA	NA	G	GTA	0	374	NA	NA	GATK_PASS
5	rs143152619	157062196	NA	NA	T	C	0	374	NA	NA	GATK_PASS
5	.	157062197	NA	NA	A	G	0	374	NA	NA	GATK_PASS
5	rs11952686	157062236	NA	NA	A	G	0.01337	374	0.1819	0.5147	GATK_PASS
5	.	157062265	NA	NA	C	T	0	374	NA	NA	GATK_FAIL
5	.	157062266	NA	NA	A	G	0	374	NA	NA	GATK_FAIL
5	rs182522294	157062278	-0.3508	0.4159	T	C	0.02273	374	-0.4165	0.04065	GATK_PASS
5	.	157062280	NA	NA	A	G	0	374	NA	NA	GATK_FAIL
5	.	157062287	NA	NA	C	T	0	374	NA	NA	GATK_FAIL
5	.	157062290	NA	NA	C	T	0	374	NA	NA	GATK_FAIL
5	.	157062291	NA	NA	T	C	0	374	NA	NA	GATK_FAIL
5	rs4235719	157062298	0.03901	0.5538	G	A	0.3636	374	0.02856	0.6477	GATK_PASS
5	rs73302602	157062352	NA	NA	G	A	0.004011	374	0.04403	0.9305	GATK_PASS
5	.	157062402	NA	NA	A	T	0.002674	374	0.379	0.5393	GATK_PASS
5	rs147236378	157062404	NA	NA	C	A	0	374	NA	NA	GATK_PASS
5	.	157062453	NA	NA	A	G	0	374	NA	NA	GATK_PASS
5	rs6894159	157062454	NA	NA	T	C	0.004011	374	0.04403	0.9305	GATK_PASS
5	rs79531758	157062544	NA	NA	T	C	0.01337	374	0.1819	0.5147	GATK_PASS
5	.	157062633	NA	NA	T	C	0	374	NA	NA	GATK_PASS
5	.	157062795	NA	NA	A	ATT	0.001337	374	0.378	0.6647	GATK_FAIL
5	rs182255414	157062905	NA	NA	G	A	0	374	NA	NA	GATK_PASS
5	rs368693650	157062966	NA	NA	T	A	0	374	NA	NA	GATK_PASS
5	rs140223004	157062985	NA	NA	G	T	0	374	NA	NA	GATK_PASS
5	.	157062988	NA	NA	T	C	0.001337	374	-0.6247	0.4737	GATK_PASS
5	.	157063034	NA	NA	T	C	0	374	NA	NA	GATK_PASS
5	.	157063089	NA	NA	C	T	0.05481	374	0.03992	0.7818	GATK_FAIL
5	rs188666192	157063099	NA	NA	A	G	0	374	NA	NA	GATK_PASS
5	.	157063106	NA	NA	C	A	0	374	NA	NA	GATK_PASS
5	.	157063108	NA	NA	T	C	0.06818	374	0.02786	0.8319	GATK_FAIL
5	.	157063120	NA	NA	T	TC	0.005362	373	0.3848	0.3782	GATK_FAIL
5	rs200549872	157063129	NA	NA	AAAAG	A	0	374	NA	NA	GATK_PASS
5	rs200549872	157063129	NA	NA	A	AAAAG	0	374	NA	NA	GATK_PASS
5	rs70984432	157063132	0.05746	0.3801	AG	A	0.4091	374	0.04457	0.4832	GATK_PASS
5	rs70984432	157063132	NA	NA	A	AGAAAG	0.01203	374	-0.0691	0.8141	GATK_PASS
5	rs375577989	157063134	0.05864	0.3704	AAAG	A	0.4211	374	0.04716	0.4605	GATK_PASS
5	rs370132612	157063135	NA	NA	A	AAG	0.01337	374	0.07912	0.7769	GATK_FAIL
5	.	157063155	NA	NA	ACTTTCTGTGATGACAGAAATGTTCCATGTCTACACTATCTAGTTGGTATCCACCAGCCACTTGTGGCTACTGAGGAGTTG	A	0	374	NA	NA	GATK_FAIL
5	.	157063155	NA	NA	ACTTTCTGTGATGACAGAAATGTTCCATGTCTACACTATCTAGTTGGTATCCACCAGCCACTTGTGGCTACTGAGGAGTTGAAGTGTGGCT	A	0.001337	374	0.378	0.6647	GATK_FAIL
5	.	157063169	NA	NA	A	AC	0	374	NA	NA	GATK_FAIL
5	.	157063211	NA	NA	T	C	0	374	NA	NA	GATK_PASS
5	.	157063226	NA	NA	T	G	0	374	NA	NA	GATK_PASS
5	rs70984433	157063285	NA	NA	AT	A	0	374	NA	NA	GATK_PASS
5	rs70984433	157063285	0.06001	0.3602	AT	A	0.3757	374	0.04095	0.5126	GATK_PASS
5	rs70984433	157063285	NA	NA	A	ATT	0.001337	374	1.381	0.1128	GATK_PASS
5	.	157063287	NA	NA	C	T	0	209	NA	NA	GATK_FAIL
5	.	157063316	NA	NA	A	G	0	374	NA	NA	GATK_PASS
5	rs193256061	157063327	NA	NA	A	C	0	374	NA	NA	GATK_PASS
5	.	157063333	NA	NA	C	T	0.001337	374	1.381	0.1128	GATK_PASS
5	.	157063445	NA	NA	T	C	0	374	NA	NA	GATK_PASS
5	rs151007371	157063474	NA	NA	A	G	0	374	NA	NA	GATK_PASS
5	.	157063568	NA	NA	T	A	0	374	NA	NA	GATK_PASS
5	rs6866690	157063576	0.03901	0.5538	T	G	0.3636	374	0.02856	0.6477	GATK_PASS
5	rs79802755	157063577	NA	NA	T	C	0.009358	374	0.3842	0.2472	GATK_PASS
5	.	157063586	NA	NA	G	A	0	374	NA	NA	GATK_PASS
5	rs140885271	157063704	NA	NA	A	C	0	374	NA	NA	GATK_PASS
5	rs62381166	157063820	-0.2502	0.4147	C	T	0.06016	374	-0.1614	0.2207	GATK_PASS
5	.	157063891	NA	NA	T	C	0	374	NA	NA	GATK_PASS
5	.	157063941	NA	NA	A	G	0	374	NA	NA	GATK_PASS
5	rs375105875	157064012	NA	NA	T	C	0	374	NA	NA	GATK_PASS