Variant CNV_M2_HG19_9_39280787_39663686_9_41426027_41808718

Location: chr9:39280787-39663686 (382Kb), chr9:41426027-41808718 (382Kb), distance: 1.8Mb
Site classification: Duplication
Variant DCN frequency: 0.007

Genes Overlapped
CNTNAP3 CDS contactin-associated protein-like 3 precursor
SPATA31A1 GENE spermatogenesis-associated protein 31A1
SPATA31A5 GENE spermatogenesis-associated protein 31A5


1000 Genomes Phase 1


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Diploid copy number distribution
POP	CN0	CN1	CN2	CN3
ASW	0	0	44	1
CEU	0	0	65	1
CHB	0	0	78	0
CHS	0	0	90	1
CLM	0	0	49	0
FIN	0	0	62	0
GBR	0	0	54	0
IBS	0	0	6	0
JPT	0	0	67	2
LWK	0	0	68	1
MXL	0	0	54	0
PUR	0	0	51	1
TSI	0	0	83	0
YRI	0	0	65	6

AFR	0	0	133	7
AFR+	0	0	177	8
AMR	0	0	154	1
ASN	0	0	235	3
EUR	0	0	270	1

ALL	0	0	836	13
    
Diploid copy number distribution (95% confident)
POP	CN0	CN1	CN2	CN3
ASW	0	0	41	0
CEU	0	0	64	0
CHB	0	0	76	0
CHS	0	0	90	1
CLM	0	0	48	0
FIN	0	0	61	0
GBR	0	0	54	0
IBS	0	0	6	0
JPT	0	0	67	1
LWK	0	0	59	0
MXL	0	0	54	0
PUR	0	0	50	0
TSI	0	0	80	0
YRI	0	0	63	4

AFR	0	0	122	4
AFR+	0	0	163	4
AMR	0	0	152	0
ASN	0	0	233	2
EUR	0	0	265	0

ALL	0	0	813	6
    

Imputation spider plots:  ASW  CEU  CHB  CHS  CLM  FIN  GBR  IBS  JPT  LWK  MXL  PUR  TSI  YRI