Variant CNV_M2_HG19_1_104161928_104210498_1_104256097_104304649
Location: chr1:104161928-104210498 (48Kb), chr1:104256097-104304649 (48Kb), distance: 45Kb
Site classification: Multi-allelic
Variant DCN frequency: 0.678
Genes Overlapped
Site classification: Multi-allelic
Variant DCN frequency: 0.678
Genes Overlapped
| AMY1A | GENE | alpha-amylase 1 precursor |
| AMY1C | GENE | alpha-amylase 1 precursor |
| AMY2A | CDS | pancreatic alpha-amylase precursor |
1000 Genomes Phase 1
Diploid copy number distribution
POP CN0 CN1 CN2 CN3 CN4 CN5 CN6 CN7 CN8 CN9 CN10
ASW 0 0 0 6 18 10 8 3 0 0 0
CEU 0 0 5 15 20 14 4 5 2 1 0
CHB 0 0 0 7 20 23 14 11 2 1 0
CHS 0 0 0 11 13 37 17 7 2 4 0
CLM 0 0 2 12 19 7 6 2 1 0 0
FIN 0 0 8 16 21 8 7 2 0 0 0
GBR 0 0 0 21 16 8 6 3 0 0 0
IBS 0 0 0 3 2 0 1 0 0 0 0
JPT 0 0 0 1 10 29 19 10 0 0 0
LWK 0 0 1 12 29 21 6 0 0 0 0
MXL 0 0 1 10 19 8 9 5 0 1 1
PUR 0 0 1 10 17 14 5 3 2 0 0
TSI 0 0 1 13 30 19 15 4 1 0 0
YRI 0 0 1 4 30 29 6 0 1 0 0
AFR 0 0 2 16 59 50 12 0 1 0 0
AFR+ 0 0 2 22 77 60 20 3 1 0 0
AMR 0 0 4 32 55 29 20 10 3 1 1
ASN 0 0 0 19 43 89 50 28 4 5 0
EUR 0 0 14 68 89 49 33 14 3 1 0
ALL 0 0 20 141 264 227 123 55 11 7 1
Diploid copy number distribution (95% confident)
POP CN0 CN1 CN2 CN3 CN4 CN5 CN6 CN7 CN8 CN9 CN10
ASW 0 0 0 6 18 9 7 1 0 0 0
CEU 0 0 5 15 20 14 4 4 1 1 0
CHB 0 0 0 7 19 22 11 11 2 0 0
CHS 0 0 0 11 12 33 14 6 2 3 0
CLM 0 0 2 12 18 6 5 2 1 0 0
FIN 0 0 8 15 17 8 5 1 0 0 0
GBR 0 0 0 21 16 6 3 2 0 0 0
IBS 0 0 0 3 2 0 1 0 0 0 0
JPT 0 0 0 1 10 27 17 9 0 0 0
LWK 0 0 1 12 29 19 5 0 0 0 0
MXL 0 0 1 10 19 7 7 4 0 0 1
PUR 0 0 1 10 13 14 3 2 1 0 0
TSI 0 0 1 13 30 19 13 4 1 0 0
YRI 0 0 1 4 30 29 5 0 1 0 0
AFR 0 0 2 16 59 48 10 0 1 0 0
AFR+ 0 0 2 22 77 57 17 1 1 0 0
AMR 0 0 4 32 50 27 15 8 2 0 1
ASN 0 0 0 19 41 82 42 26 4 3 0
EUR 0 0 14 67 85 47 26 11 2 1 0
ALL 0 0 20 140 253 213 100 46 9 4 1
Imputation spider plots: ASW CEU CHB CHS CLM FIN GBR IBS JPT LWK MXL PUR TSI YRI