Variant CNV_M2_HG19_12_123178354_123191077_12_123191092_123204503

Location: chr12:123178354-123191077 (12Kb), chr12:123191092-123204503 (13Kb), distance: 14b
Site classification: Duplication
Variant DCN frequency: 0.025

Genes Overlapped
HCAR1 EXON hydroxycarboxylic acid receptor 1
HCAR1 INTRON hydroxycarboxylic acid receptor 1
HCAR2 GENE hydroxycarboxylic acid receptor 2
HCAR3 GENE hydroxycarboxylic acid receptor 3


1000 Genomes Phase 1


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Diploid copy number distribution
POP	CN0	CN1	CN2	CN3	CN4	CN5
ASW	0	0	0	0	45	0
CEU	0	0	0	0	63	3
CHB	0	0	0	0	67	11
CHS	0	0	0	0	88	3
CLM	0	0	0	0	49	0
FIN	0	0	0	1	61	0
GBR	0	0	0	0	54	0
IBS	0	0	0	0	6	0
JPT	0	0	0	0	54	15
LWK	0	0	0	0	68	1
MXL	0	0	0	0	54	0
PUR	0	0	0	0	52	0
TSI	0	0	0	0	80	3
YRI	0	0	0	0	70	1

AFR	0	0	0	0	138	2
AFR+	0	0	0	0	183	2
AMR	0	0	0	0	155	0
ASN	0	0	0	0	209	29
EUR	0	0	0	1	264	6

ALL	0	0	0	1	811	37
    
Diploid copy number distribution (95% confident)
POP	CN0	CN1	CN2	CN3	CN4	CN5
ASW	0	0	0	0	39	0
CEU	0	0	0	0	59	0
CHB	0	0	0	0	64	4
CHS	0	0	0	0	75	2
CLM	0	0	0	0	48	0
FIN	0	0	0	0	60	0
GBR	0	0	0	0	52	0
IBS	0	0	0	0	6	0
JPT	0	0	0	0	48	12
LWK	0	0	0	0	64	0
MXL	0	0	0	0	48	0
PUR	0	0	0	0	48	0
TSI	0	0	0	0	76	1
YRI	0	0	0	0	68	0

AFR	0	0	0	0	132	0
AFR+	0	0	0	0	171	0
AMR	0	0	0	0	144	0
ASN	0	0	0	0	187	18
EUR	0	0	0	0	253	1

ALL	0	0	0	0	755	19
    

Imputation spider plots:  ASW  CEU  CHB  CHS  CLM  FIN  GBR  IBS  JPT  LWK  MXL  PUR  TSI  YRI