Variant CNV_M1_HG19_2_89879700_89915431

Location: chr2:89879700-89915431 (35Kb)
Site classification: Multi-allelic
Variant DCN frequency: 0.110
Genes overlapped: None


1000 Genomes Phase 1


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Diploid copy number distribution
POP	CN0	CN1	CN2	CN3	CN4	CN5
ASW	0	0	3	3	38	1
CEU	0	0	0	4	62	0
CHB	0	0	0	10	68	0
CHS	0	0	0	13	78	0
CLM	0	0	0	1	48	0
FIN	0	0	0	6	56	0
GBR	0	0	0	2	52	0
IBS	0	0	0	0	6	0
JPT	0	0	1	9	58	1
LWK	0	0	0	13	54	2
MXL	0	0	0	5	49	0
PUR	0	0	0	4	48	0
TSI	0	0	0	8	74	1
YRI	0	0	2	7	60	2

AFR	0	0	2	20	114	4
AFR+	0	0	5	23	152	5
AMR	0	0	0	10	145	0
ASN	0	0	1	32	204	1
EUR	0	0	0	20	250	1

ALL	0	0	6	85	751	7
    
Diploid copy number distribution (95% confident)
POP	CN0	CN1	CN2	CN3	CN4	CN5
ASW	0	0	3	3	35	0
CEU	0	0	0	4	60	0
CHB	0	0	0	10	67	0
CHS	0	0	0	12	78	0
CLM	0	0	0	1	46	0
FIN	0	0	0	6	55	0
GBR	0	0	0	1	51	0
IBS	0	0	0	0	6	0
JPT	0	0	1	9	58	1
LWK	0	0	0	11	53	1
MXL	0	0	0	5	49	0
PUR	0	0	0	4	48	0
TSI	0	0	0	7	73	1
YRI	0	0	2	7	60	2

AFR	0	0	2	18	113	3
AFR+	0	0	5	21	148	3
AMR	0	0	0	10	143	0
ASN	0	0	1	31	203	1
EUR	0	0	0	18	245	1

ALL	0	0	6	80	739	5
    

Imputation spider plots:  ASW  CEU  CHB  CHS  CLM  FIN  GBR  IBS  JPT  LWK  MXL  PUR  TSI  YRI