Variant CNV_M1_HG19_2_108621514_108664810

Location: chr2:108621514-108664810 (43Kb)
Site classification: Duplication
Variant DCN frequency: 0.001

Genes Overlapped
SLC5A7 CDS high affinity choline transporter 1


1000 Genomes Phase 1


Other plot formats:   PDF  Unscaled PNG  Unscaled PDF
Diploid copy number distribution
POP	CN0	CN1	CN2	CN3
ASW	0	0	45	0
CEU	0	0	66	0
CHB	0	0	78	0
CHS	0	0	91	0
CLM	0	0	49	0
FIN	0	0	62	0
GBR	0	0	54	0
IBS	0	0	6	0
JPT	0	0	69	0
LWK	0	0	69	0
MXL	0	0	54	0
PUR	0	0	52	0
TSI	0	0	83	0
YRI	0	0	70	1

AFR	0	0	139	1
AFR+	0	0	184	1
AMR	0	0	155	0
ASN	0	0	238	0
EUR	0	0	271	0

ALL	0	0	848	1
    
Diploid copy number distribution (95% confident)
POP	CN0	CN1	CN2	CN3
ASW	0	0	45	0
CEU	0	0	66	0
CHB	0	0	78	0
CHS	0	0	91	0
CLM	0	0	49	0
FIN	0	0	62	0
GBR	0	0	54	0
IBS	0	0	6	0
JPT	0	0	69	0
LWK	0	0	69	0
MXL	0	0	54	0
PUR	0	0	52	0
TSI	0	0	83	0
YRI	0	0	70	1

AFR	0	0	139	1
AFR+	0	0	184	1
AMR	0	0	155	0
ASN	0	0	238	0
EUR	0	0	271	0

ALL	0	0	848	1
    

Imputation spider plots:  ASW  CEU  CHB  CHS  CLM  FIN  GBR  IBS  JPT  LWK  MXL  PUR  TSI  YRI