Variant CNV_M1_HG19_1_16186344_16190960

Location: chr1:16186344-16190960 (4.6Kb)
Site classification: Deletion
Variant DCN frequency: 0.005

Genes Overlapped
SPEN INTRON msx2-interacting protein


1000 Genomes Phase 1


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Diploid copy number distribution
POP	CN0	CN1	CN2	CN3	CN4
ASW	0	0	45	0	0
CEU	0	0	65	1	0
CHB	0	3	75	0	0
CHS	0	1	90	0	0
CLM	0	0	48	1	0
FIN	0	0	62	0	0
GBR	0	0	54	0	0
IBS	0	0	6	0	0
JPT	0	0	69	0	0
LWK	0	0	69	0	0
MXL	0	0	53	0	1
PUR	0	0	52	0	0
TSI	0	0	83	0	0
YRI	0	0	71	0	0

AFR	0	0	140	0	0
AFR+	0	0	185	0	0
AMR	0	0	153	1	1
ASN	0	4	234	0	0
EUR	0	0	270	1	0

ALL	0	4	842	2	1
    
Diploid copy number distribution (95% confident)
POP	CN0	CN1	CN2
ASW	0	0	45
CEU	0	0	65
CHB	0	3	73
CHS	0	1	89
CLM	0	0	48
FIN	0	0	62
GBR	0	0	54
IBS	0	0	6
JPT	0	0	69
LWK	0	0	68
MXL	0	0	53
PUR	0	0	50
TSI	0	0	83
YRI	0	0	71

AFR	0	0	139
AFR+	0	0	184
AMR	0	0	151
ASN	0	4	231
EUR	0	0	270

ALL	0	4	836
    

Imputation spider plots:  ASW  CEU  CHB  CHS  CLM  FIN  GBR  IBS  JPT  LWK  MXL  PUR  TSI  YRI