Variant CNV_M1_HG19_12_80822879_80828264

Location: chr12:80822879-80828264 (5.4Kb)
Site classification: Deletion
Variant DCN frequency: 0.022

Genes Overlapped
PTPRQ INTRON phosphotidylinositol phosphatase PTPRQ precursor


1000 Genomes Phase 1


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Diploid copy number distribution 
POP	CN0	CN1	CN2
ASW	0	1	44
CEU	0	0	66
CHB	0	3	75
CHS	0	7	84
CLM	0	1	48
FIN	0	0	62
GBR	0	0	54
IBS	0	0	6
JPT	0	2	67
LWK	0	3	66
MXL	0	3	51
PUR	0	0	52
TSI	0	0	83
YRI	1	1	69

AFR	1	4	135
AFR+	1	5	179
AMR	0	4	151
ASN	0	12	226
EUR	0	0	271

ALL	1	21	827
Diploid copy number distribution (95% confident) 
POP	CN0	CN1	CN2
ASW	0	1	44
CEU	0	0	66
CHB	0	3	75
CHS	0	5	84
CLM	0	1	48
FIN	0	0	62
GBR	0	0	54
IBS	0	0	6
JPT	0	2	67
LWK	0	2	66
MXL	0	3	51
PUR	0	0	52
TSI	0	0	83
YRI	1	1	68

AFR	1	3	134
AFR+	1	4	178
AMR	0	4	151
ASN	0	10	226
EUR	0	0	271

ALL	1	18	826

Imputation spider plots:  ASW  CEU  CHB  CHS  CLM  FIN  GBR  IBS  JPT  LWK  MXL  PUR  TSI  YRI