# Matched RNA-seq data for 340 epigenomes, of which 304 match the 833 QCed epigenomes.
# Manifest:
avail_rna.txt
merged_log2fpkm.mtx.gz
merged_log2fpkm.pc.mtx.gz
merged_qn_log2fpkm.mtx.gz
merged_qn_log2fpkm.pc.mtx.gz

# File descriptions:
avail_rna.txt
- List of ids for which there is matched RNA-seq (from ENCODE/Roadmap/GGR)

RNA-seq_dataset_mapping.tsv
- Tab-delimited table of all datasets used, their, epigenomic IDs, and their ENCODE DCC ids and locations.

merged_log2fpkm.mtx.gz
- Matrix of RNA-seq data
- Columns are: ID, ENSEMBL gene ID, and log2 FPKM

merged_log2fpkm.pc.mtx.gz
- Same as above, but restricted to protein coding genes 

merged_qn_log2fpkm.mtx.gz
- Same as merged_log2fpkm.mtx.gz but quantile normalized using the R preprocessCore library (function normalize.quantiles)

merged_qn_log2fpkm.pc.mtx.gz
- Same as above, but restricted to protein coding genes