Under human-snRNA-seq/
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human_smart-seq2.expr.mtx
human_smart-seq2.expr_colnames.tsv
human_smart-seq2.expr_rownames.tsv
human_smart-seq2.expr_symbol_rownames.tsv
- Human smart-seq2 expression matrix and row/column names

human_smart-seq2_fusions.maxsensitivity_prediction_numbers.meta.counts.tsv
- Human smart-seq2 processed counts on 5.8k cells in 47individuals (column count describes number of fusion events per cell)

human_10x.aggregated.fusion_predictions.processed_counts.tsv
- Human 10x processed counts on 2M cells in 380 individuals (column count describes number of fusion events per cell)


Under mouse-CK-p25-snRNA-seq/
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mouse_CK_CKp25.all_aggregated.cn.tsv
mouse_CK_CKp25.all_aggregated.counts_mat.tsv
mouse_CK_CKp25.all_aggregated.rn.symb.tsv
mouse_CK_CKp25.all_aggregated.rn.tsv
- Mouse CK and CK-p25 smart-seq2 expression matrix and row/column names

mouse_CK_CKp25.allprojid_aggregated.starfusion.pred.tsv
- Raw fusion calls for the mouse CK and CK-p25 cells, not combined with metadata

mouse_CK_CKp25_QCed_cells_metadata.tsv
- Metadata for the mouse CK and CK-p25 cells


Other datasets that are not in this repository:
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The full datasets for Hi-C, Mate-pair, and BLISS can be found through GEO accession number GSE227445:
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE227445

The complete human 10x dataset can be found on Synapse at:
https://www.synapse.org/#!Synapse:syn51015750/datasets/

Mouse smart-seq2 data can be found through GEO accession number GSE174265:
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc= GSE174265
Note: additional information is described in Welch et al., Sci. Adv. 2022:
https://www.science.org/doi/10.1126/sciadv.abo4662