#PBS -lnodes=1
#PBS -lwalltime=4:00:00
cd /psych/genetics_data/ripke/rp_bins/impute_v4
./impute4.r264 \
-h example/1000GP_Phase3_chr20.hap.gz \
-l example/1000GP_Phase3_chr20.legend \
-m example/genetic_map_chr20_combined_b37.txt \
-g example/test.haps.gz \
-int 2000000 3000000 \
-buffer 500 \
-no_maf_align \
-Ne 20000 \
-snp_blocks \
-o_gz \
-o example/output.qish2
