@include "atac/_sc_atac_reporter_stages.mro"

call SUMMARIZE_REPORTS_SINGLECELL(
    sample_id            = "pbmc_granulocyte_sorted_10k",
    reference_path       = "/home/Genomes/cellranger/refdata-cellranger-arc-GRCh38-2020-A-2.0.0",
    complexity_summary   = "/home/benjames/data4/10X/pbmc_granulocyte_sorted_10k/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_METRIC_COLLECTOR/ESTIMATE_LIBRARY_COMPLEXITY/fork0/join-u3b7f6eb4ba/files/complexity_summary.json",
    cell_calling_summary = null,
    peak_results         = "/home/benjames/data4/10X/pbmc_granulocyte_sorted_10k/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/_PEAK_CALLER/DETECT_PEAKS/fork0/join-u3b7f6eabbf/files/peak_metrics.json",
    basic_results        = "/home/benjames/data4/10X/pbmc_granulocyte_sorted_10k/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/MARK_ATAC_DUPLICATES/fork0/join-u3b7f6ea07b/files/summary.json",
    insert_summary       = "/home/benjames/data4/10X/pbmc_granulocyte_sorted_10k/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_METRIC_COLLECTOR/REPORT_INSERT_SIZES/fork0/chnk0-u3b7f6eab43/files/insert_summary.json",
    singlecell_results   = "/home/benjames/data4/10X/pbmc_granulocyte_sorted_10k/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_METRIC_COLLECTOR/SUMMARIZE_SINGLECELL_METRICS/fork0/chnk0-u3b7f6eb770/files/summary.json",
    enrichment_results   = "/home/benjames/data4/10X/pbmc_granulocyte_sorted_10k/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_METRIC_COLLECTOR/REPORT_TSS_CTCF/fork0/chnk0-u3b7f6eb654/files/summary_metrics.json",
)
