[stdout]
mean_fragments_per_noncell False None
median_fragments_per_noncell False None
frac_high_count_excluded_bcs_whitelist_contam False None
mean_fragments_per_cell False None
min_fragments_per_cell False None
stdev_fragments_per_cell False None
peakcaller_alpha_bg_noise False None
peakcaller_mix_prob_bg_noise False None
peakcaller_mix_prob_zero_noise False None
peakcaller_mix_prob_signal False None
peakcaller_mean_bg_noise False None
peakcaller_p_signal False None
peakcaller_p_zero_noise False None
peakcaller_threshold False None
peakcaller_method False None
peakcaller_threshold_override False None
bases_in_peaks False None
insert_twist_period False None
insert_nucleosome_period False None
frac_fragments_nfr False None
frac_fragments_nuc False None
frac_fragments_nfr_or_nuc False None
frac_fragments_overlapping_targets False None
frac_fragments_overlapping_dnase False None
frac_fragments_overlapping_enhancer False None
frac_fragments_overlapping_promoter False None
frac_fragments_overlapping_blacklist False None
frac_waste_no_barcode False None
frac_valid_noncell False None
waste_ratio_mito_cells False None
waste_ratio_unmapped_cells False None
waste_ratio_lowmapq_cells False None
waste_ratio_dup_cells False None
waste_ratio_mito_noncells False None
waste_ratio_unmapped_noncells False None
waste_ratio_lowmapq_noncells False None
waste_ratio_dup_noncells False None
frac_waste_overall_nondup False None
frac_waste_cell_nondup False None
num_reads False None
total_passed_filter_fragments False None
r1_q30_bases False None
r1_tot_bases False None
r2_q30_bases False None
r2_tot_bases False None
si_q30_bases False None
si_tot_bases False None
bc_q30_bases False None
bc_tot_bases False None
non_nuclear_read_fraction False None
median_insert_size False None
cells_detected False None
observed_doublets False None
observed_doublet_rate False None
inferred_doublets False None
inferred_doublet_rate False None
fitted_mean_noise False None
fitted_dispersion_noise False None
fitted_mean_signal False None
fitted_dispersion_signal False None
cell_threshold False None
goodness_of_fit False None
estimated_cells_present False None
annotated_cells False None
estimated_fraction_cells_annotated False None
waste_no_barcode_fragments False None
waste_non_cell_barcode_fragments False None
frac_waste_non_cell_barcode False None
waste_chimeric_fragments False None
frac_waste_chimeric False None
waste_mitochondrial_fragments False None
frac_waste_mitochondrial False None
waste_unmapped_fragments False None
frac_waste_unmapped False None
waste_lowmapq_fragments False None
frac_waste_lowmapq False None
waste_duplicate_fragments False None
frac_waste_duplicate False None
waste_total_fragments False None
frac_waste_total False None
waste_cell_mito_fragments False None
waste_cell_unmapped_fragments False None
waste_cell_lowmapq_fragments False None
waste_cell_dup_fragments False None
total_usable_fragments False None
frac_mapped_confidently False None
ctcf_enrichment_score False None
bulk_total_library_complexity False None
bulk_estimated_saturation False None
median_per_cell_estimated_saturation False None
bulk_unique_fragments_at_30000000_reads False None
median_per_cell_total_library_complexity False None
median_per_cell_unique_fragments_at_50000_HQ_RPC False None
median_per_cell_unique_fragments_at_10000_HQ_RPC False None
median_per_cell_unique_fragments_at_30000_HQ_RPC False None
median_per_cell_unique_fragments_at_50000_RRPC False None
median_per_cell_unique_fragments_at_30000_RRPC False None
median_per_cell_unique_fragments_at_10000_RRPC False None
median_purity False None
cellranger-atac_version False None
reference_annotation False None
reference_annotation_gtf_url False None
reference_assembly False None
reference_assembly_accession False None
reference_assembly_fasta_url False None
reference_organism False None
putative_gelbead_doublets_found False None
estimated_gelbead_doublet_rate False None
post_norm_median_frags_per_cell_Library False None
pre_norm_median_frags_per_cell_Library False None
total_post_normalization_Library False None
total_pre_normalization_Library False None
unique_post_normalization_Library False None
unique_pre_normalization_Library False None
total_post_normalization False None
total_pre_normalization False None
number_of_low_targeting_barcodes False None
fraction_of_genome_within_2000bp_of_peaks False None
num_analysis_bcs False None
putative_barcode_multiplets_found False None
median_fragments_per_cell False None
total_peaks_detected False None
frac_primary_genome_in_peaks False None
frac_cut_fragments_in_peaks False None
r1_q30_bases_frac False None
r2_q30_bases_frac False None
bc_q30_bases_frac False None
si_q30_bases_frac False None
frac_fragments_overlapping_tss False None
frac_fragments_overlapping_peaks False None
frac_valid_barcode False None
num_fragments False None
frac_pcr_dup_passed_filters False None
tss_enrichment_score False None
mean_sequenced_fragments_per_cell False None
frac_passed_filter_fragments_in_cells False None
frac_reads_mapq_gt_30 False None
frac_reads_unmapped False None
frac_reads_mapq_gt_30_mito False None
/net/bmc-lab5/data/kellis/users/benjames/cellranger-arc-2.0.2/mro/atac/stages/reporter/create_websummary
