@include "atac/_sc_atac_analyzer_stages.mro"

call ATAC_COMBINE_CLUSTERING as COMBINE_CLUSTERING(
    filtered_matrix = "/home/benjames/data4/10X/pbmc_granulocyte_sorted_10k/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_JOINT_CELL_DETECTOR/MERGE_ATAC_RNA_MATRICES/fork0/join-u3b7f6eb558/files/atac.h5",
    clustered_data  = "/home/benjames/data4/10X/pbmc_granulocyte_sorted_10k/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/_ATAC_CLUSTERING_COMPUTER/CLUSTER_CELLS/fork0/join-u3b7f6eb935/files/clustered_data",
    knn_clusters    = "/home/benjames/data4/10X/pbmc_granulocyte_sorted_10k/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/_ATAC_CLUSTERING_COMPUTER/ATAC_RUN_GRAPH_CLUSTERING/fork0/join-u3b7f6eb935/files/knn_clusters",
    factorization   = ["lsa"],
)
