@include "atac_rna/_joint_cell_detector_stages.mro"

call FILTER_UMI_MATRIX(
    sample_id      = "pbmc_granulocyte_sorted_10k",
    rna_raw_matrix = "/home/benjames/data4/10X/pbmc_granulocyte_sorted_10k/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_GEX_MATRIX_COMPUTER/WRITE_H5_MATRIX/fork0/chnk0-u3b7f6ea5a5/files/raw_feature_bc_matrix.h5",
    cell_barcodes  = "/home/benjames/data4/10X/pbmc_granulocyte_sorted_10k/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_JOINT_CELL_DETECTOR/DETECT_JOINT_CELL_BARCODES/fork0/join-u3b7f6eb4a6/files/cell_barcodes.csv",
    gem_groups     = [1],
)
