2023-12-04 18:26:51 [time] __start__
2023-12-04 18:26:51 [monitor] cgroup memory limit of 9223372036854771712 bytes detected
2023-12-04 18:26:53 [info] Input reads: [
    {
        "barcode":"/net/bmc-lab5/data/kellis/users/benjames/seq/pbmc_granulocyte_sorted_10k/atac/pbmc_granulocyte_sorted_10k_S16_L001_R2_001.fastq.gz",
        "chemistry":null,
        "fastq_mode":"ILMN_BCL2FASTQ",
        "gem_group":1,
        "read1":"/net/bmc-lab5/data/kellis/users/benjames/seq/pbmc_granulocyte_sorted_10k/atac/pbmc_granulocyte_sorted_10k_S16_L001_R1_001.fastq.gz",
        "read2":"/net/bmc-lab5/data/kellis/users/benjames/seq/pbmc_granulocyte_sorted_10k/atac/pbmc_granulocyte_sorted_10k_S16_L001_R3_001.fastq.gz",
        "read_group":"pbmc_granulocyte_sorted_10k:MissingLibrary:1:HJ2W5DSXY:1",
        "reads_interleaved":false,
        "sample_index":"/net/bmc-lab5/data/kellis/users/benjames/seq/pbmc_granulocyte_sorted_10k/atac/pbmc_granulocyte_sorted_10k_S16_L001_I1_001.fastq.gz",
        "subsample_rate":1.0
    },
    {
        "barcode":"/net/bmc-lab5/data/kellis/users/benjames/seq/pbmc_granulocyte_sorted_10k/atac/pbmc_granulocyte_sorted_10k_S16_L002_R2_001.fastq.gz",
        "chemistry":null,
        "fastq_mode":"ILMN_BCL2FASTQ",
        "gem_group":1,
        "read1":"/net/bmc-lab5/data/kellis/users/benjames/seq/pbmc_granulocyte_sorted_10k/atac/pbmc_granulocyte_sorted_10k_S16_L002_R1_001.fastq.gz",
        "read2":"/net/bmc-lab5/data/kellis/users/benjames/seq/pbmc_granulocyte_sorted_10k/atac/pbmc_granulocyte_sorted_10k_S16_L002_R3_001.fastq.gz",
        "read_group":"pbmc_granulocyte_sorted_10k:MissingLibrary:1:HJ2W5DSXY:2",
        "reads_interleaved":false,
        "sample_index":"/net/bmc-lab5/data/kellis/users/benjames/seq/pbmc_granulocyte_sorted_10k/atac/pbmc_granulocyte_sorted_10k_S16_L002_I1_001.fastq.gz",
        "subsample_rate":1.0
    },
    {
        "barcode":"/net/bmc-lab5/data/kellis/users/benjames/seq/pbmc_granulocyte_sorted_10k/atac/pbmc_granulocyte_sorted_10k_S16_L003_R2_001.fastq.gz",
        "chemistry":null,
        "fastq_mode":"ILMN_BCL2FASTQ",
        "gem_group":1,
        "read1":"/net/bmc-lab5/data/kellis/users/benjames/seq/pbmc_granulocyte_sorted_10k/atac/pbmc_granulocyte_sorted_10k_S16_L003_R1_001.fastq.gz",
        "read2":"/net/bmc-lab5/data/kellis/users/benjames/seq/pbmc_granulocyte_sorted_10k/atac/pbmc_granulocyte_sorted_10k_S16_L003_R3_001.fastq.gz",
        "read_group":"pbmc_granulocyte_sorted_10k:MissingLibrary:1:HJ2W5DSXY:3",
        "reads_interleaved":false,
        "sample_index":"/net/bmc-lab5/data/kellis/users/benjames/seq/pbmc_granulocyte_sorted_10k/atac/pbmc_granulocyte_sorted_10k_S16_L003_I1_001.fastq.gz",
        "subsample_rate":1.0
    },
    {
        "barcode":"/net/bmc-lab5/data/kellis/users/benjames/seq/pbmc_granulocyte_sorted_10k/atac/pbmc_granulocyte_sorted_10k_S16_L004_R2_001.fastq.gz",
        "chemistry":null,
        "fastq_mode":"ILMN_BCL2FASTQ",
        "gem_group":1,
        "read1":"/net/bmc-lab5/data/kellis/users/benjames/seq/pbmc_granulocyte_sorted_10k/atac/pbmc_granulocyte_sorted_10k_S16_L004_R1_001.fastq.gz",
        "read2":"/net/bmc-lab5/data/kellis/users/benjames/seq/pbmc_granulocyte_sorted_10k/atac/pbmc_granulocyte_sorted_10k_S16_L004_R3_001.fastq.gz",
        "read_group":"pbmc_granulocyte_sorted_10k:MissingLibrary:1:HJ2W5DSXY:4",
        "reads_interleaved":false,
        "sample_index":"/net/bmc-lab5/data/kellis/users/benjames/seq/pbmc_granulocyte_sorted_10k/atac/pbmc_granulocyte_sorted_10k_S16_L004_I1_001.fastq.gz",
        "subsample_rate":1.0
    }
]
2023-12-04 18:26:56 [time] __end__
