@include "atac/_basic_sc_atac_counter_stages.mro"

call ATAC_SETUP_CHUNKS(
    sample_id         = "pbmc_granulocyte_sorted_10k",
    sample_def        = [
        {
            "fastq_id": null,
            "fastq_mode": "ILMN_BCL2FASTQ",
            "gem_group": null,
            "lanes": null,
            "library_type": "Chromatin Accessibility",
            "read_path": "/net/bmc-lab5/data/kellis/users/benjames/seq/pbmc_granulocyte_sorted_10k/atac",
            "sample_indices": ["any"],
            "sample_names": ["pbmc_granulocyte_sorted_10k"],
            "subsample_rate": null,
            "target_set": null,
            "target_set_name": null,
        },
    ],
    subsample_rate    = null,
    barcode_whitelist = "737K-arc-v1",
)
