@include "atac/_cr_atac_stages.mro"

call MARK_ATAC_DUPLICATES(
    aligned_shards   = [
        "/home/benjames/data4/10X/pbmc_granulocyte_sorted_10k/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/ALIGN_ATAC_READS/fork0/chnk00-u3b7f6e6269/files/aligned_chunk.shard",
        "/home/benjames/data4/10X/pbmc_granulocyte_sorted_10k/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/ALIGN_ATAC_READS/fork0/chnk01-u3b7f6e6269/files/aligned_chunk.shard",
        "/home/benjames/data4/10X/pbmc_granulocyte_sorted_10k/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/ALIGN_ATAC_READS/fork0/chnk02-u3b7f6e6269/files/aligned_chunk.shard",
        "/home/benjames/data4/10X/pbmc_granulocyte_sorted_10k/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/ALIGN_ATAC_READS/fork0/chnk03-u3b7f6e6269/files/aligned_chunk.shard",
        "/home/benjames/data4/10X/pbmc_granulocyte_sorted_10k/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/ALIGN_ATAC_READS/fork0/chnk04-u3b7f6e6269/files/aligned_chunk.shard",
        "/home/benjames/data4/10X/pbmc_granulocyte_sorted_10k/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/ALIGN_ATAC_READS/fork0/chnk05-u3b7f6e6269/files/aligned_chunk.shard",
        "/home/benjames/data4/10X/pbmc_granulocyte_sorted_10k/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/ALIGN_ATAC_READS/fork0/chnk06-u3b7f6e6269/files/aligned_chunk.shard",
        "/home/benjames/data4/10X/pbmc_granulocyte_sorted_10k/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/ALIGN_ATAC_READS/fork0/chnk07-u3b7f6e6269/files/aligned_chunk.shard",
        "/home/benjames/data4/10X/pbmc_granulocyte_sorted_10k/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/ALIGN_ATAC_READS/fork0/chnk08-u3b7f6e6269/files/aligned_chunk.shard",
        "/home/benjames/data4/10X/pbmc_granulocyte_sorted_10k/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/ALIGN_ATAC_READS/fork0/chnk09-u3b7f6e6269/files/aligned_chunk.shard",
        "/home/benjames/data4/10X/pbmc_granulocyte_sorted_10k/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/ALIGN_ATAC_READS/fork0/chnk10-u3b7f6e6269/files/aligned_chunk.shard",
        "/home/benjames/data4/10X/pbmc_granulocyte_sorted_10k/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/ALIGN_ATAC_READS/fork0/chnk11-u3b7f6e6269/files/aligned_chunk.shard",
        "/home/benjames/data4/10X/pbmc_granulocyte_sorted_10k/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/ALIGN_ATAC_READS/fork0/chnk12-u3b7f6e6269/files/aligned_chunk.shard",
        "/home/benjames/data4/10X/pbmc_granulocyte_sorted_10k/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/ALIGN_ATAC_READS/fork0/chnk13-u3b7f6e6269/files/aligned_chunk.shard",
        "/home/benjames/data4/10X/pbmc_granulocyte_sorted_10k/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/ALIGN_ATAC_READS/fork0/chnk14-u3b7f6e6269/files/aligned_chunk.shard",
        "/home/benjames/data4/10X/pbmc_granulocyte_sorted_10k/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/ALIGN_ATAC_READS/fork0/chnk15-u3b7f6e6269/files/aligned_chunk.shard",
        "/home/benjames/data4/10X/pbmc_granulocyte_sorted_10k/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/ALIGN_ATAC_READS/fork0/chnk16-u3b7f6e6269/files/aligned_chunk.shard",
        "/home/benjames/data4/10X/pbmc_granulocyte_sorted_10k/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/ALIGN_ATAC_READS/fork0/chnk17-u3b7f6e6269/files/aligned_chunk.shard",
        "/home/benjames/data4/10X/pbmc_granulocyte_sorted_10k/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/ALIGN_ATAC_READS/fork0/chnk18-u3b7f6e6269/files/aligned_chunk.shard",
        "/home/benjames/data4/10X/pbmc_granulocyte_sorted_10k/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/ALIGN_ATAC_READS/fork0/chnk19-u3b7f6e6269/files/aligned_chunk.shard",
        "/home/benjames/data4/10X/pbmc_granulocyte_sorted_10k/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/ALIGN_ATAC_READS/fork0/chnk20-u3b7f6e6269/files/aligned_chunk.shard",
        "/home/benjames/data4/10X/pbmc_granulocyte_sorted_10k/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/ALIGN_ATAC_READS/fork0/chnk21-u3b7f6e6269/files/aligned_chunk.shard",
        "/home/benjames/data4/10X/pbmc_granulocyte_sorted_10k/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/ALIGN_ATAC_READS/fork0/chnk22-u3b7f6e6269/files/aligned_chunk.shard",
        "/home/benjames/data4/10X/pbmc_granulocyte_sorted_10k/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/ALIGN_ATAC_READS/fork0/chnk23-u3b7f6e6269/files/aligned_chunk.shard",
        "/home/benjames/data4/10X/pbmc_granulocyte_sorted_10k/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/ALIGN_ATAC_READS/fork0/chnk24-u3b7f6e6269/files/aligned_chunk.shard",
        "/home/benjames/data4/10X/pbmc_granulocyte_sorted_10k/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/ALIGN_ATAC_READS/fork0/chnk25-u3b7f6e6269/files/aligned_chunk.shard",
        "/home/benjames/data4/10X/pbmc_granulocyte_sorted_10k/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/ALIGN_ATAC_READS/fork0/chnk26-u3b7f6e6269/files/aligned_chunk.shard",
        "/home/benjames/data4/10X/pbmc_granulocyte_sorted_10k/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/ALIGN_ATAC_READS/fork0/chnk27-u3b7f6e6269/files/aligned_chunk.shard",
        "/home/benjames/data4/10X/pbmc_granulocyte_sorted_10k/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/ALIGN_ATAC_READS/fork0/chnk28-u3b7f6e6269/files/aligned_chunk.shard",
        "/home/benjames/data4/10X/pbmc_granulocyte_sorted_10k/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/ALIGN_ATAC_READS/fork0/chnk29-u3b7f6e6269/files/aligned_chunk.shard",
        "/home/benjames/data4/10X/pbmc_granulocyte_sorted_10k/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/ALIGN_ATAC_READS/fork0/chnk30-u3b7f6e6269/files/aligned_chunk.shard",
        "/home/benjames/data4/10X/pbmc_granulocyte_sorted_10k/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/ALIGN_ATAC_READS/fork0/chnk31-u3b7f6e6269/files/aligned_chunk.shard",
        "/home/benjames/data4/10X/pbmc_granulocyte_sorted_10k/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/ALIGN_ATAC_READS/fork0/chnk32-u3b7f6e6269/files/aligned_chunk.shard",
        "/home/benjames/data4/10X/pbmc_granulocyte_sorted_10k/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/ALIGN_ATAC_READS/fork0/chnk33-u3b7f6e6269/files/aligned_chunk.shard",
        "/home/benjames/data4/10X/pbmc_granulocyte_sorted_10k/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/ALIGN_ATAC_READS/fork0/chnk34-u3b7f6e6269/files/aligned_chunk.shard",
        "/home/benjames/data4/10X/pbmc_granulocyte_sorted_10k/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/ALIGN_ATAC_READS/fork0/chnk35-u3b7f6e6269/files/aligned_chunk.shard",
        "/home/benjames/data4/10X/pbmc_granulocyte_sorted_10k/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/ALIGN_ATAC_READS/fork0/chnk36-u3b7f6e6269/files/aligned_chunk.shard",
        "/home/benjames/data4/10X/pbmc_granulocyte_sorted_10k/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/ALIGN_ATAC_READS/fork0/chnk37-u3b7f6e6269/files/aligned_chunk.shard",
        "/home/benjames/data4/10X/pbmc_granulocyte_sorted_10k/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/ALIGN_ATAC_READS/fork0/chnk38-u3b7f6e6269/files/aligned_chunk.shard",
        "/home/benjames/data4/10X/pbmc_granulocyte_sorted_10k/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/ALIGN_ATAC_READS/fork0/chnk39-u3b7f6e6269/files/aligned_chunk.shard",
        "/home/benjames/data4/10X/pbmc_granulocyte_sorted_10k/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/ALIGN_ATAC_READS/fork0/chnk40-u3b7f6e6269/files/aligned_chunk.shard",
        "/home/benjames/data4/10X/pbmc_granulocyte_sorted_10k/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/ALIGN_ATAC_READS/fork0/chnk41-u3b7f6e6269/files/aligned_chunk.shard",
        "/home/benjames/data4/10X/pbmc_granulocyte_sorted_10k/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/ALIGN_ATAC_READS/fork0/chnk42-u3b7f6e6269/files/aligned_chunk.shard",
        "/home/benjames/data4/10X/pbmc_granulocyte_sorted_10k/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/ALIGN_ATAC_READS/fork0/chnk43-u3b7f6e6269/files/aligned_chunk.shard",
        "/home/benjames/data4/10X/pbmc_granulocyte_sorted_10k/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/ALIGN_ATAC_READS/fork0/chnk44-u3b7f6e6269/files/aligned_chunk.shard",
        "/home/benjames/data4/10X/pbmc_granulocyte_sorted_10k/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/ALIGN_ATAC_READS/fork0/chnk45-u3b7f6e6269/files/aligned_chunk.shard",
    ],
    unaligned_shards = [
        "/home/benjames/data4/10X/pbmc_granulocyte_sorted_10k/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/ALIGN_ATAC_READS/fork0/chnk00-u3b7f6e6269/files/unaligned_chunk.shard",
        "/home/benjames/data4/10X/pbmc_granulocyte_sorted_10k/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/ALIGN_ATAC_READS/fork0/chnk01-u3b7f6e6269/files/unaligned_chunk.shard",
        "/home/benjames/data4/10X/pbmc_granulocyte_sorted_10k/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/ALIGN_ATAC_READS/fork0/chnk02-u3b7f6e6269/files/unaligned_chunk.shard",
        "/home/benjames/data4/10X/pbmc_granulocyte_sorted_10k/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/ALIGN_ATAC_READS/fork0/chnk03-u3b7f6e6269/files/unaligned_chunk.shard",
        "/home/benjames/data4/10X/pbmc_granulocyte_sorted_10k/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/ALIGN_ATAC_READS/fork0/chnk04-u3b7f6e6269/files/unaligned_chunk.shard",
        "/home/benjames/data4/10X/pbmc_granulocyte_sorted_10k/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/ALIGN_ATAC_READS/fork0/chnk05-u3b7f6e6269/files/unaligned_chunk.shard",
        "/home/benjames/data4/10X/pbmc_granulocyte_sorted_10k/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/ALIGN_ATAC_READS/fork0/chnk06-u3b7f6e6269/files/unaligned_chunk.shard",
        "/home/benjames/data4/10X/pbmc_granulocyte_sorted_10k/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/ALIGN_ATAC_READS/fork0/chnk07-u3b7f6e6269/files/unaligned_chunk.shard",
        "/home/benjames/data4/10X/pbmc_granulocyte_sorted_10k/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/ALIGN_ATAC_READS/fork0/chnk08-u3b7f6e6269/files/unaligned_chunk.shard",
        "/home/benjames/data4/10X/pbmc_granulocyte_sorted_10k/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/ALIGN_ATAC_READS/fork0/chnk09-u3b7f6e6269/files/unaligned_chunk.shard",
        "/home/benjames/data4/10X/pbmc_granulocyte_sorted_10k/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/ALIGN_ATAC_READS/fork0/chnk10-u3b7f6e6269/files/unaligned_chunk.shard",
        "/home/benjames/data4/10X/pbmc_granulocyte_sorted_10k/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/ALIGN_ATAC_READS/fork0/chnk11-u3b7f6e6269/files/unaligned_chunk.shard",
        "/home/benjames/data4/10X/pbmc_granulocyte_sorted_10k/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/ALIGN_ATAC_READS/fork0/chnk12-u3b7f6e6269/files/unaligned_chunk.shard",
        "/home/benjames/data4/10X/pbmc_granulocyte_sorted_10k/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/ALIGN_ATAC_READS/fork0/chnk13-u3b7f6e6269/files/unaligned_chunk.shard",
        "/home/benjames/data4/10X/pbmc_granulocyte_sorted_10k/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/ALIGN_ATAC_READS/fork0/chnk14-u3b7f6e6269/files/unaligned_chunk.shard",
        "/home/benjames/data4/10X/pbmc_granulocyte_sorted_10k/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/ALIGN_ATAC_READS/fork0/chnk15-u3b7f6e6269/files/unaligned_chunk.shard",
        "/home/benjames/data4/10X/pbmc_granulocyte_sorted_10k/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/ALIGN_ATAC_READS/fork0/chnk16-u3b7f6e6269/files/unaligned_chunk.shard",
        "/home/benjames/data4/10X/pbmc_granulocyte_sorted_10k/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/ALIGN_ATAC_READS/fork0/chnk17-u3b7f6e6269/files/unaligned_chunk.shard",
        "/home/benjames/data4/10X/pbmc_granulocyte_sorted_10k/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/ALIGN_ATAC_READS/fork0/chnk18-u3b7f6e6269/files/unaligned_chunk.shard",
        "/home/benjames/data4/10X/pbmc_granulocyte_sorted_10k/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/ALIGN_ATAC_READS/fork0/chnk19-u3b7f6e6269/files/unaligned_chunk.shard",
        "/home/benjames/data4/10X/pbmc_granulocyte_sorted_10k/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/ALIGN_ATAC_READS/fork0/chnk20-u3b7f6e6269/files/unaligned_chunk.shard",
        "/home/benjames/data4/10X/pbmc_granulocyte_sorted_10k/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/ALIGN_ATAC_READS/fork0/chnk21-u3b7f6e6269/files/unaligned_chunk.shard",
        "/home/benjames/data4/10X/pbmc_granulocyte_sorted_10k/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/ALIGN_ATAC_READS/fork0/chnk22-u3b7f6e6269/files/unaligned_chunk.shard",
        "/home/benjames/data4/10X/pbmc_granulocyte_sorted_10k/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/ALIGN_ATAC_READS/fork0/chnk23-u3b7f6e6269/files/unaligned_chunk.shard",
        "/home/benjames/data4/10X/pbmc_granulocyte_sorted_10k/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/ALIGN_ATAC_READS/fork0/chnk24-u3b7f6e6269/files/unaligned_chunk.shard",
        "/home/benjames/data4/10X/pbmc_granulocyte_sorted_10k/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/ALIGN_ATAC_READS/fork0/chnk25-u3b7f6e6269/files/unaligned_chunk.shard",
        "/home/benjames/data4/10X/pbmc_granulocyte_sorted_10k/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/ALIGN_ATAC_READS/fork0/chnk26-u3b7f6e6269/files/unaligned_chunk.shard",
        "/home/benjames/data4/10X/pbmc_granulocyte_sorted_10k/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/ALIGN_ATAC_READS/fork0/chnk27-u3b7f6e6269/files/unaligned_chunk.shard",
        "/home/benjames/data4/10X/pbmc_granulocyte_sorted_10k/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/ALIGN_ATAC_READS/fork0/chnk28-u3b7f6e6269/files/unaligned_chunk.shard",
        "/home/benjames/data4/10X/pbmc_granulocyte_sorted_10k/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/ALIGN_ATAC_READS/fork0/chnk29-u3b7f6e6269/files/unaligned_chunk.shard",
        "/home/benjames/data4/10X/pbmc_granulocyte_sorted_10k/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/ALIGN_ATAC_READS/fork0/chnk30-u3b7f6e6269/files/unaligned_chunk.shard",
        "/home/benjames/data4/10X/pbmc_granulocyte_sorted_10k/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/ALIGN_ATAC_READS/fork0/chnk31-u3b7f6e6269/files/unaligned_chunk.shard",
        "/home/benjames/data4/10X/pbmc_granulocyte_sorted_10k/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/ALIGN_ATAC_READS/fork0/chnk32-u3b7f6e6269/files/unaligned_chunk.shard",
        "/home/benjames/data4/10X/pbmc_granulocyte_sorted_10k/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/ALIGN_ATAC_READS/fork0/chnk33-u3b7f6e6269/files/unaligned_chunk.shard",
        "/home/benjames/data4/10X/pbmc_granulocyte_sorted_10k/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/ALIGN_ATAC_READS/fork0/chnk34-u3b7f6e6269/files/unaligned_chunk.shard",
        "/home/benjames/data4/10X/pbmc_granulocyte_sorted_10k/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/ALIGN_ATAC_READS/fork0/chnk35-u3b7f6e6269/files/unaligned_chunk.shard",
        "/home/benjames/data4/10X/pbmc_granulocyte_sorted_10k/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/ALIGN_ATAC_READS/fork0/chnk36-u3b7f6e6269/files/unaligned_chunk.shard",
        "/home/benjames/data4/10X/pbmc_granulocyte_sorted_10k/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/ALIGN_ATAC_READS/fork0/chnk37-u3b7f6e6269/files/unaligned_chunk.shard",
        "/home/benjames/data4/10X/pbmc_granulocyte_sorted_10k/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/ALIGN_ATAC_READS/fork0/chnk38-u3b7f6e6269/files/unaligned_chunk.shard",
        "/home/benjames/data4/10X/pbmc_granulocyte_sorted_10k/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/ALIGN_ATAC_READS/fork0/chnk39-u3b7f6e6269/files/unaligned_chunk.shard",
        "/home/benjames/data4/10X/pbmc_granulocyte_sorted_10k/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/ALIGN_ATAC_READS/fork0/chnk40-u3b7f6e6269/files/unaligned_chunk.shard",
        "/home/benjames/data4/10X/pbmc_granulocyte_sorted_10k/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/ALIGN_ATAC_READS/fork0/chnk41-u3b7f6e6269/files/unaligned_chunk.shard",
        "/home/benjames/data4/10X/pbmc_granulocyte_sorted_10k/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/ALIGN_ATAC_READS/fork0/chnk42-u3b7f6e6269/files/unaligned_chunk.shard",
        "/home/benjames/data4/10X/pbmc_granulocyte_sorted_10k/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/ALIGN_ATAC_READS/fork0/chnk43-u3b7f6e6269/files/unaligned_chunk.shard",
        "/home/benjames/data4/10X/pbmc_granulocyte_sorted_10k/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/ALIGN_ATAC_READS/fork0/chnk44-u3b7f6e6269/files/unaligned_chunk.shard",
        "/home/benjames/data4/10X/pbmc_granulocyte_sorted_10k/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/ALIGN_ATAC_READS/fork0/chnk45-u3b7f6e6269/files/unaligned_chunk.shard",
    ],
    num_read_pairs   = 457001034,
    reference_path   = "/home/Genomes/cellranger/refdata-cellranger-arc-GRCh38-2020-A-2.0.0",
    barcode_counts   = "/home/benjames/data4/10X/pbmc_granulocyte_sorted_10k/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/MAKE_ATAC_SHARDS/fork0/join-u3b7f6e6040/files/barcode_counts.bch.bincode",
    assay            = "arc",
    sample_id        = "pbmc_granulocyte_sorted_10k",
    sample_desc      = "pbmc_granulocyte_sorted_10k",
)
