[stdout]
num_feature_linkages False None
num_genes_with_linkage False None
num_peaks_with_linkage False None
total_read_pairs False rna
good_bc_frac False rna
good_umi_frac False rna
bc_bases_with_q30_frac False rna
umi_bases_with_q30_frac False rna
read_bases_with_q30_frac False rna
i1_bases_with_q30_frac False rna
i2_bases_with_q30_frac False rna
tso_frac False rna
multi_cdna_pcr_dupe_reads_frac False rna
num_fragments False atac
frac_valid_barcode False atac
bc_q30_bases_frac False atac
r1_q30_bases_frac False atac
r2_q30_bases_frac False atac
si_q30_bases_frac False atac
frac_pcr_dup_passed_filters False atac
annotated_cells False None
cells_detected False None
rna_force_cells_min_count False None
atac_force_cells_min_count False None
multi_transcriptome_total_raw_reads_per_filtered_bc False rna
filtered_bcs_conf_mapped_barcoded_reads_cum_frac GRCh38 rna
filtered_bcs_median_counts GRCh38 rna
filtered_bcs_median_unique_genes_detected GRCh38 rna
filtered_bcs_total_unique_genes_detected GRCh38 rna
mean_sequenced_fragments_per_cell False atac
frac_passed_filter_fragments_in_cells False atac
frac_cut_fragments_in_peaks False atac
median_fragments_per_cell False atac
genome_mapped_reads_frac GRCh38 rna
genome_conf_mapped_reads_frac GRCh38 rna
intergenic_conf_mapped_reads_frac GRCh38 rna
intronic_conf_mapped_reads_frac GRCh38 rna
exonic_conf_mapped_reads_frac GRCh38 rna
transcriptome_conf_mapped_reads_frac GRCh38 rna
multi_antisense_reads_frac False rna
frac_reads_mapq_gt_30 False atac
frac_reads_unmapped False atac
frac_reads_mapq_gt_30_mito False atac
frac_mapped_confidently False atac
total_peaks_detected False atac
frac_primary_genome_in_peaks False atac
tss_enrichment_score False atac
frac_fragments_overlapping_tss False atac
frac_fragments_overlapping_peaks False atac
frac_fragments_overlapping_targets False atac
frac_fragments_overlapping_dnase False atac
frac_fragments_overlapping_enhancer False atac
frac_fragments_overlapping_promoter False atac
frac_fragments_overlapping_blacklist False atac
ctcf_enrichment_score False atac
median_fragments_per_noncell False atac
observed_doublets False atac
observed_doublet_rate False atac
inferred_doublet_rate False atac
median_purity False atac
filtered_bcs_mean_count_purity GRCh38 rna
{'Feature linkages detected': 2714843, 'Linked genes': 15968, 'Linked peaks': 115012, 'GEX Sequenced read pairs': 621671174, 'GEX Valid barcodes': 0.9537838246300928, 'GEX Valid UMIs': 0.999574593432894, 'GEX Q30 bases in barcode': 0.9288116544864282, 'GEX Q30 bases in UMI': 0.9215026579645, 'GEX Q30 bases in read 2': 0.8913178764399814, 'GEX Q30 bases in sample index i1': 0.9155043953022688, 'GEX Q30 bases in sample index i2': 0.890447448215991, 'GEX Reads with TSO': 0.06991349738857282, 'GEX Percent duplicates': 0.852132908452129, 'ATAC Sequenced read pairs': 457001034, 'ATAC Valid barcodes': 0.9724234978426767, 'ATAC Q30 bases in barcode': 0.8870170487130671, 'ATAC Q30 bases in read 1': 0.9547451848434986, 'ATAC Q30 bases in read 2': 0.9448466955029395, 'ATAC Q30 bases in sample index i1': 0.9215150668017963, 'ATAC Percent duplicates': 0.4128327850641474, 'Estimated number of cells': 11898, 'GEX Mean raw reads per cell': 52250.05664817616, 'GEX Fraction of transcriptomic reads in cells': 0.8721560885014455, 'GEX Median UMI counts per cell': 3777.5, 'GEX Median genes per cell': 1826.5, 'GEX Total genes detected': 29717, 'ATAC Mean raw read pairs per cell': 38409.903681290976, 'ATAC Fraction of high-quality fragments in cells': 0.9080734607628447, 'ATAC Fraction of transposition events in peaks in cells': 0.6384894838995657, 'ATAC Median high-quality fragments per cell': 17305.5, 'GEX Reads mapped to genome': 0.9691379417248, 'GEX Reads mapped confidently to genome': 0.9096405731046492, 'GEX Reads mapped confidently to intergenic regions': 0.06187714439531018, 'GEX Reads mapped confidently to intronic regions': 0.36309474275221904, 'GEX Reads mapped confidently to exonic regions': 0.4846686859571198, 'GEX Reads mapped confidently to transcriptome': 0.687501851260036, 'GEX Reads mapped antisense to gene': 0.15361394736311193, 'ATAC Confidently mapped read pairs': 0.919761897081397, 'ATAC Unmapped read pairs': 0.010423171165078808, 'ATAC Non-nuclear read pairs': 0.00894370405297595, 'ATAC Number of peaks': 143887, 'ATAC Fraction of genome in peaks': 0.039406858705818185, 'ATAC TSS enrichment score': 10.9132, 'ATAC Fraction of high-quality fragments overlapping TSS': 0.515344878377584, 'ATAC Fraction of high-quality fragments overlapping peaks': 0.6841210620903065}
