[stdout]
num_feature_linkages False None
num_genes_with_linkage False None
num_peaks_with_linkage False None
total_read_pairs False rna
good_bc_frac False rna
good_umi_frac False rna
bc_bases_with_q30_frac False rna
umi_bases_with_q30_frac False rna
read_bases_with_q30_frac False rna
i1_bases_with_q30_frac False rna
i2_bases_with_q30_frac False rna
tso_frac False rna
multi_cdna_pcr_dupe_reads_frac False rna
num_fragments False atac
frac_valid_barcode False atac
bc_q30_bases_frac False atac
r1_q30_bases_frac False atac
r2_q30_bases_frac False atac
si_q30_bases_frac False atac
frac_pcr_dup_passed_filters False atac
annotated_cells False None
cells_detected False None
rna_force_cells_min_count False None
atac_force_cells_min_count False None
multi_transcriptome_total_raw_reads_per_filtered_bc False rna
filtered_bcs_conf_mapped_barcoded_reads_cum_frac GRCh38 rna
filtered_bcs_median_counts GRCh38 rna
filtered_bcs_median_unique_genes_detected GRCh38 rna
filtered_bcs_total_unique_genes_detected GRCh38 rna
mean_sequenced_fragments_per_cell False atac
frac_passed_filter_fragments_in_cells False atac
frac_cut_fragments_in_peaks False atac
median_fragments_per_cell False atac
genome_mapped_reads_frac GRCh38 rna
genome_conf_mapped_reads_frac GRCh38 rna
intergenic_conf_mapped_reads_frac GRCh38 rna
intronic_conf_mapped_reads_frac GRCh38 rna
exonic_conf_mapped_reads_frac GRCh38 rna
transcriptome_conf_mapped_reads_frac GRCh38 rna
multi_antisense_reads_frac False rna
frac_reads_mapq_gt_30 False atac
frac_reads_unmapped False atac
frac_reads_mapq_gt_30_mito False atac
frac_mapped_confidently False atac
total_peaks_detected False atac
frac_primary_genome_in_peaks False atac
tss_enrichment_score False atac
frac_fragments_overlapping_tss False atac
frac_fragments_overlapping_peaks False atac
frac_fragments_overlapping_targets False atac
frac_fragments_overlapping_dnase False atac
frac_fragments_overlapping_enhancer False atac
frac_fragments_overlapping_promoter False atac
frac_fragments_overlapping_blacklist False atac
ctcf_enrichment_score False atac
median_fragments_per_noncell False atac
observed_doublets False atac
observed_doublet_rate False atac
inferred_doublet_rate False atac
median_purity False atac
filtered_bcs_mean_count_purity GRCh38 rna
{'Feature linkages detected': 847025, 'Linked genes': 13629, 'Linked peaks': 88843, 'GEX Sequenced read pairs': 395508840, 'GEX Valid barcodes': 0.9684031537702166, 'GEX Valid UMIs': 0.999592340338082, 'GEX Q30 bases in barcode': 0.9626999667360931, 'GEX Q30 bases in UMI': 0.9623555397104534, 'GEX Q30 bases in read 2': 0.9363639852339376, 'GEX Q30 bases in sample index i1': 0.9271315553045242, 'GEX Q30 bases in sample index i2': 0.916383544084276, 'GEX Reads with TSO': 0.16824686902067726, 'GEX Percent duplicates': 0.8607322916248972, 'ATAC Sequenced read pairs': 310036087, 'ATAC Valid barcodes': 0.9767716685187038, 'ATAC Q30 bases in barcode': 0.8870349101087062, 'ATAC Q30 bases in read 1': 0.9505929686178758, 'ATAC Q30 bases in read 2': 0.945435961722845, 'ATAC Q30 bases in sample index i1': 0.9255572743214244, 'ATAC Percent duplicates': 0.40860633477932906, 'Estimated number of cells': 3233, 'GEX Mean raw reads per cell': 122334.9334982988, 'GEX Fraction of transcriptomic reads in cells': 0.9171761767385382, 'GEX Median UMI counts per cell': 6966.0, 'GEX Median genes per cell': 2600.0, 'GEX Total genes detected': 31201, 'ATAC Mean raw read pairs per cell': 95897.33591091866, 'ATAC Fraction of high-quality fragments in cells': 0.8461296144818288, 'ATAC Fraction of transposition events in peaks in cells': 0.35310676816982517, 'ATAC Median high-quality fragments per cell': 22881.0, 'GEX Reads mapped to genome': 0.9686394771858956, 'GEX Reads mapped confidently to genome': 0.9218697210408748, 'GEX Reads mapped confidently to intergenic regions': 0.061854435415400574, 'GEX Reads mapped confidently to intronic regions': 0.6544689923997653, 'GEX Reads mapped confidently to exonic regions': 0.20554629322570897, 'GEX Reads mapped confidently to transcriptome': 0.738609392396893, 'GEX Reads mapped antisense to gene': 0.11138974289424226, 'ATAC Confidently mapped read pairs': 0.9122188476078915, 'ATAC Unmapped read pairs': 0.010470871411817295, 'ATAC Non-nuclear read pairs': 0.012816298381420354, 'ATAC Number of peaks': 134030, 'ATAC Fraction of genome in peaks': 0.03688180785616905, 'ATAC TSS enrichment score': 6.5285, 'ATAC Fraction of high-quality fragments overlapping TSS': 0.2861598735423503, 'ATAC Fraction of high-quality fragments overlapping peaks': 0.38811600342294955}
