state (Emission order)	Genome %	Rpt_All_DNA.bed.gz	Rpt_All_LINE.bed.gz	Rpt_All_LTR.bed.gz	Rpt_All_LowCmplx.bed.gz	Rpt_All_Other.bed.gz	Rpt_All_RC.bed.gz	Rpt_All_RNA.bed.gz	Rpt_All_SINE.bed.gz	Rpt_All_Satellite.bed.gz	Rpt_All_Simple.bed.gz	Rpt_All_Unknown.bed.gz	Rpt_DNA_DNA.bed.gz	Rpt_DNA_Merlin.bed.gz	Rpt_DNA_MuDR.bed.gz	Rpt_DNA_PiggyBac.bed.gz	Rpt_DNA_TcMar-Mariner.bed.gz	Rpt_DNA_TcMar-Tc2.bed.gz	Rpt_DNA_TcMar-Tigger.bed.gz	Rpt_DNA_TcMar.bed.gz	Rpt_DNA_hAT-Blackjack.bed.gz	Rpt_DNA_hAT-Charlie.bed.gz	Rpt_DNA_hAT-Tip100.bed.gz	Rpt_DNA_hAT.bed.gz	Rpt_LINE_CR1.bed.gz	Rpt_LINE_Dong-R4.bed.gz	Rpt_LINE_L1.bed.gz	Rpt_LINE_L2.bed.gz	Rpt_LINE_Penelope.bed.gz	Rpt_LINE_RTE-BovB.bed.gz	Rpt_LINE_RTE.bed.gz	Rpt_LTR_ERV.bed.gz	Rpt_LTR_ERV1.bed.gz	Rpt_LTR_ERVK.bed.gz	Rpt_LTR_ERVL-MaLR.bed.gz	Rpt_LTR_ERVL.bed.gz	Rpt_LTR_Gypsy.bed.gz	Rpt_LTR_LTR.bed.gz	Rpt_RNA_RNA.bed.gz	Rpt_RNA_TcMar-Mariner.bed.gz	Rpt_RNA_rRNA.bed.gz	Rpt_RNA_scRNA.bed.gz	Rpt_RNA_snRNA.bed.gz	Rpt_RNA_srpRNA.bed.gz	Rpt_RNA_tRNA.bed.gz	Rpt_SINE_Alu.bed.gz	Rpt_SINE_Deu.bed.gz	Rpt_SINE_MIR.bed.gz	Rpt_SINE_SINE.bed.gz	Rpt_SINE_tRNA.bed.gz	Rpt_Satellite_Satellite.bed.gz	Rpt_Satellite_acro.bed.gz	Rpt_Satellite_centr.bed.gz	Rpt_Satellite_telo.bed.gz
1_Pro	0.49128	0.23064	0.11465	0.16148	3.13641	0.00690	0.15306	1.43895	0.35095	0.18830	1.03632	0.09696	0.16091	0.00000	0.00000	0.23900	0.03331	0.08993	0.06803	0.14784	0.14542	0.36317	0.20345	0.73912	0.20501	0.23659	0.04514	0.44952	0.00000	0.51908	0.04883	0.83520	0.39124	0.14784	0.03038	0.07953	0.16903	0.08279	0.52112	0.02431	0.31917	0.92567	1.28504	0.68309	5.80763	0.22589	0.33741	0.80722	0.25168	0.09416	0.37875	0.00000	0.00000	3.31425
2_Enh1	1.56609	0.77971	0.42987	1.13823	0.87946	0.02330	1.13312	1.16439	0.54091	0.06164	0.80571	1.24676	1.47961	0.00000	0.22450	0.43889	0.51055	0.54042	0.40011	1.03406	0.87436	1.02525	1.02001	1.25545	1.03055	0.90281	0.26760	1.15598	1.65623	1.31982	0.69842	1.41799	1.85501	0.53515	0.66538	1.07315	1.57240	0.93089	1.28627	1.04633	0.61166	1.12594	1.00939	0.94960	1.96094	0.28765	2.74666	1.45244	1.78431	1.53600	0.15646	0.00000	0.00184	0.51305
3_Enh2	9.64299	1.07878	0.58668	1.15742	0.79277	0.01692	1.22128	1.20937	0.71923	0.03066	0.83852	1.59026	1.78505	0.33713	0.53371	0.66905	0.83038	0.92396	0.68827	1.56566	1.26888	1.29172	1.42459	1.74220	1.31458	1.37970	0.39642	1.42855	1.20099	1.92829	1.08673	1.62184	1.33560	0.44232	0.97729	1.29541	2.03201	1.64893	1.44064	1.35425	0.93886	0.89748	0.89843	1.08861	1.53444	0.46800	2.21869	1.62484	2.02944	1.66299	0.06986	0.20114	0.00261	0.30142
4_Egn1	1.07663	1.14261	0.58521	0.53104	0.40553	0.03216	0.65445	1.44063	0.84124	0.04420	0.48918	0.72248	1.25597	0.50850	0.51977	0.96490	0.70216	0.97724	1.14377	1.22122	0.56221	1.36105	0.47258	0.44538	1.15602	0.41179	0.40112	1.42082	0.00000	2.78375	0.88228	0.59251	0.56091	0.14232	0.52644	0.58225	0.16989	0.45055	1.06771	1.26956	1.90762	1.27098	1.35299	1.59310	1.66286	0.65816	1.37325	1.50170	1.21150	2.30577	0.13823	0.00000	0.00000	0.00000
5_Egn2	3.63286	1.42824	0.91928	0.50358	0.70341	0.08971	1.22776	1.61228	1.22160	0.02875	0.60387	0.93879	1.23357	2.57741	0.82475	2.39573	1.00715	1.81902	1.58630	1.67531	0.75230	1.54356	0.48542	0.65429	1.31748	1.38011	0.84023	1.25108	1.23564	1.70023	1.34548	0.50667	0.43011	0.18820	0.58595	0.51657	0.25038	0.56775	1.08025	1.81837	1.15407	2.52909	1.60405	1.83517	1.17316	1.21498	1.08573	1.24641	0.85048	1.39988	0.07754	0.00000	0.00281	0.10398
6_Egn3	2.66122	1.21661	0.75921	0.70930	0.69777	0.00482	1.26126	1.11981	0.89180	0.11582	0.95493	1.28303	1.25013	0.24602	1.21526	0.95374	0.88251	1.25831	1.02580	1.34277	1.10114	1.36801	1.28485	1.45156	1.65121	2.12391	0.57318	1.55674	1.75871	0.62741	1.45062	1.11262	0.41883	0.19873	0.82301	0.96380	1.08828	1.17470	0.89872	1.21247	1.11735	1.05795	1.02906	1.08866	1.17355	0.63583	1.69187	1.82056	1.00157	1.29203	0.30937	0.00000	0.00890	0.54500
7_Egn4	1.62054	1.08812	0.49505	0.33807	0.51847	0.07357	0.69068	1.48367	0.95096	0.21999	0.45475	0.63918	0.69303	3.27381	0.17208	1.60865	0.76939	0.83168	1.24574	1.25031	0.38549	1.21506	0.27294	0.38045	0.96345	0.11425	0.35672	1.11489	0.00000	0.91436	0.86711	0.10985	0.20770	0.16703	0.40988	0.43216	0.11990	0.31151	0.89228	1.36103	1.29164	2.80371	1.64603	2.18013	0.81836	0.90771	0.32512	1.10944	1.17979	0.85024	0.68087	0.00000	0.00227	0.03909
8_Egn5	4.96366	1.25720	0.73352	0.86835	0.56233	0.03787	1.04134	1.37415	0.77049	0.04988	0.59736	1.31608	1.15455	2.14449	1.06478	1.00222	1.31437	1.16323	1.35755	1.33957	0.99400	1.27207	0.93359	0.88812	1.37213	0.82978	0.56115	1.49689	1.59467	1.34767	1.26179	1.11312	0.54452	0.22719	1.00028	1.17704	0.97692	1.15880	1.45028	1.62113	0.98744	1.39557	1.21189	1.42331	1.22799	0.61774	1.36360	1.32147	1.63352	1.40980	0.14252	0.00000	0.00583	0.02331
9_Egn6	1.55538	1.28212	0.70964	0.32198	0.94468	0.24911	0.94199	1.86579	1.66013	0.02497	0.57415	0.76568	0.88779	1.28092	0.56217	1.95926	0.89130	1.76194	1.56506	1.41851	0.64270	1.31755	0.29198	0.40545	1.16457	1.46735	0.66039	0.88785	0.64613	1.11489	1.15843	0.00000	0.23300	0.29098	0.37122	0.37236	0.18756	0.31511	1.09425	1.85262	1.14302	2.73203	2.34352	2.55685	1.19970	1.85977	0.80164	0.93834	0.80742	1.27056	0.06322	0.00000	0.00723	0.00000
10_Rep1	1.41594	0.56487	0.31020	0.49207	1.77088	0.01074	0.32347	1.07581	0.56116	0.29294	1.20006	0.56721	1.05291	0.00000	0.12707	0.18785	0.35505	0.52703	0.23310	0.61885	0.58584	0.72865	1.02188	1.31500	0.94356	0.74876	0.15229	1.01720	0.00000	0.41613	0.43477	0.87230	0.54971	0.40567	0.43450	0.51372	0.77188	0.45564	0.40979	0.74666	1.83587	0.92417	0.61178	0.82456	2.22108	0.28567	1.35006	1.56071	0.50134	1.22959	0.30071	0.00000	0.24675	1.70404
11_Rep2	5.83030	1.14917	0.82178	1.47670	0.65759	0.04511	1.21186	1.15637	0.76020	0.17670	1.00511	1.52256	1.19306	2.31846	1.48148	0.79074	1.14764	1.04695	0.87213	1.31621	1.42714	1.23759	1.62662	1.72605	1.47919	1.42228	0.61134	1.77983	1.21481	1.13446	1.08272	1.47772	1.02741	0.42517	1.68205	1.85877	2.10278	1.62745	1.79240	1.17035	1.41678	0.80501	1.01660	1.08189	1.09698	0.51466	1.24151	1.65094	1.11734	1.21626	0.23541	0.00000	0.13988	0.46668
12_Het1	2.81085	1.04388	1.32591	2.86286	0.43963	0.27381	0.51346	0.84410	0.45013	9.44635	0.96774	0.74708	0.47682	0.17067	1.41392	0.91989	1.28927	0.71262	1.22504	0.65626	0.91086	0.96844	0.86013	0.71908	0.57626	0.28060	1.44543	0.84059	1.05558	0.46460	0.65730	2.28044	3.21120	3.72722	3.15834	1.77902	1.02049	0.73077	1.28771	0.47275	1.92364	1.05089	0.97175	0.75799	0.64395	0.38884	0.34331	0.67343	0.41832	0.49311	5.88209	8.44421	11.36434	3.57580
13_Het2	4.71539	1.00855	1.96544	1.87825	0.63802	0.64906	0.83864	0.83993	0.54866	6.27648	0.73354	0.69642	0.53324	1.51411	1.10999	1.23582	1.66459	0.91393	1.30248	0.62276	1.05160	0.78161	0.94158	0.67032	0.63197	0.71272	2.25172	0.73779	0.24763	0.50751	0.79823	2.02450	1.85760	2.33450	2.08007	1.52305	0.78180	0.84210	0.99424	0.67330	1.92915	0.67231	1.00353	0.56242	0.62443	0.54313	0.29780	0.57000	0.34911	0.47933	4.47303	2.66336	7.32481	1.16006
14_Low1	2.42011	1.25353	1.07826	0.83194	0.97392	0.09525	1.86376	1.37311	1.41657	0.41052	1.10586	1.04749	0.97520	0.00000	1.32346	1.22463	1.11785	1.38587	1.06909	1.16885	1.35009	1.32542	1.57870	1.70281	1.30031	1.49469	1.04310	1.21878	0.64860	1.17296	1.33721	0.65207	0.67438	0.40162	0.91276	0.94102	1.31711	0.87397	1.23672	1.43578	1.08660	1.73080	1.61352	1.68033	0.84510	1.43781	0.85653	1.34389	0.75314	0.74923	0.72276	0.00000	0.25119	0.70319
15_Low2	28.96293	1.29302	1.08009	0.94354	0.97569	0.04719	1.50803	1.14855	0.82239	0.07449	0.81487	1.44398	1.40710	0.68360	1.54276	1.27231	1.36320	1.44231	1.34769	1.31756	1.43830	1.21140	1.39686	1.26307	1.37407	1.54187	1.03810	1.23864	1.62126	1.35205	1.56086	1.04836	0.70477	0.21982	1.03450	1.19906	1.34266	1.52022	1.23631	1.33316	0.97420	0.94998	1.07586	0.95387	1.17963	0.72315	1.31978	1.17956	1.43229	1.38199	0.19649	0.00000	0.01332	0.14323
16_Low3	2.99380	1.04913	1.84162	0.91625	1.04458	0.45477	1.01020	1.05802	0.86406	0.69521	1.23781	0.81959	1.04740	2.06244	1.58088	1.06544	1.37837	1.16113	1.10752	0.76909	1.35269	0.95771	1.06639	0.91978	1.01323	1.10150	2.07782	0.79382	0.79606	1.04638	1.04670	1.23907	1.03493	0.68816	0.84195	0.92763	0.83306	0.83375	0.77835	0.94571	1.78742	1.12188	1.27949	0.61214	1.07846	0.89216	0.68270	0.76232	0.65886	0.99744	0.52676	0.51118	0.78201	0.55898
17_Unmap	23.64004	0.41433	1.03407	0.80521	1.48725	3.87739	0.25236	0.37808	1.58492	1.50535	1.54673	0.18732	0.18800	0.89387	0.44963	0.57283	0.43465	0.31989	0.50133	0.20013	0.33219	0.37642	0.34199	0.33553	0.18880	0.10135	1.22944	0.19028	0.23726	0.09737	0.21650	0.38615	1.16938	2.43953	0.61873	0.42591	0.17171	0.22760	0.23505	0.15460	0.43485	0.54349	0.57621	0.67858	0.29957	1.96814	0.07657	0.20051	0.16294	0.12054	2.00047	2.54804	1.22300	2.72740
Base	100	3.17621	20.37017	8.52482	0.54494	0.12958	0.01461	0.06285	12.65008	0.40493	0.83937	0.04177	0.01974	0.00057	0.02230	0.01753	0.09120	0.05389	1.09647	0.03047	0.11037	1.45051	0.21341	0.07032	0.35076	0.00389	16.53849	3.35731	0.00034	0.00241	0.11770	0.00619	2.69364	0.28544	3.57965	1.82598	0.12148	0.01604	0.00384	0.01921	0.00567	0.00394	0.01090	0.00850	0.01080	9.90842	0.00579	2.72173	0.00666	0.00747	0.12948	0.00100	0.26624	0.00821