
Anne E. Carpenter
Principal Investigator Institute Scientist, Senior Director of the Imaging Platform[CV]

Shantanu Singh
Senior Group LeaderI lead the image-based profiling team. We develop machine learning and statistical methods to create fingerprints of genes, chemicals, and diseases from microscopy images of cells.
[Website]

Allen Goodman
Senior Software EngineerMy primary interests are computer vision and machine learning and their applicability to cell and microbiology. I’m also interested in compilers, computer architecture, and software engineering.
[Website]
[GitHub]
[Twitter]

Beth Cimini
Computational Biologist III lead the image assay development team, which collaborates with biologists around the world to create open source image analysis pipelines to help turn images into quantitative data.
[Website]

Jeanelle Ackerman
Senior Operations SpecialistI do the things that the scientists don’t do!

Hamdah Shafqat-Abbasi
Postdoctoral AssociateMy primary interest is applying advanced statistical methods and machine learning approaches to analyze high throughput image-based phenotypic screens to identify potential new drugs and their mechanisms of action to cure various diseases.

Marzieh Haghighi
Postdoctoral AssociateI’m eager to apply my training in machine learning and signal processing to build the tools needed for the next generation of diagnostics/therapies.

Gregory Way
Postdoctoral AssociateI use data science, machine learning, and software engineering to extract insights from large biomedical data sets. I am interested in image-based profiling, genomics, and systems biology.
[Website]
[GitHub]
[Twitter]

Nasim Jamali
Postdoctoral AssociateI am a postdoctoral researcher in the assay development team with a background in cell biology and microscopy. By creating image analysis pipelines we help researchers extract meaningful information from their microscopy images.

David R. Stirling
Postdoctoral AssociateI am a postdoctoral researcher in the image assay development team, with a background in infection and immunity. My passion is helping others use quantitative microscopy to answer biological questions. I am also interested in software engineering and machine learning.
[GitHub]
[Twitter]

Becki Ledford
Administrative AssistantI’m passionate about helping scientists do science! I have a background in research publishing, freelance writing and editing, and systems management. I have a master’s degree in Counseling Psychology.
[Twitter]

Srinivas Niranj Chandrasekaran
Postdoctoral AssociateI am a postdoctoral associate in the profiling team. I am a computational biologist and biophysicist by training with interests in developing mathematical and computational tools to model biological systems.

Erin Weisbart
Computational ScientistAs part of the image assay development team, I use my background as a biochemist/cell biologist to help other scientists make qualitative data quantitative.
Group alumni
Where are they now? Check their career progress on Dr. Carpenter's [CV]
Alum | Years | Role |
---|---|---|
Adam Fraser |
2008–2011 | Lead software developer for the CellProfiler Analyst project |
Adam Papallo |
2005–2007 | Bioinformatics Analyst |
A.J. (Hannes) Pretorius |
2010-2013 | Postdoc based in Roy Ruddle's lab, University of Leeds |
Alison Kozol |
2014-2016 | Administrative and Information Technologies |
Amin Allalou |
2010 | Visiting Ph.D student from Uppsala University, Sweden |
Anna Thomas |
2013 | High School Student |
Auguste Genovesio |
2011–2013 | Computational Biologist – Group Leader Image Analysis |
Björn Nilsson |
2008 | Postdoctoral Associate |
Carolina Wählby |
2008-2015 | Image processing algorithm development. P.I. forhigh-throughput C. elegans image analysis |
Chris Gang |
2006 | High school student |
Christina Wright |
2010 | Undergraduate student |
Christoph Friedrich |
2018 | Visiting Master’s student from Univ of Applied Science in Esslingen, Germany |
Christopher Lewis |
2007–2008 | Administrative Assistant |
Claire Barnes |
2019 | Visiting Postdoctoral Researcher |
Claire McQuin |
2016-2018 | Software Engineer |
Colin Clarke |
2005 | Undergraduate student |
Csaba Molnar |
2018 | Visiting Postdoctoral Researcher |
David Dao |
2015-2016 | Graduate student |
David Logan |
2008-2016 | Image assay development, specializing in neuronal experiments |
Emily Schloff |
2009 | Undergraduate student |
Fabian Theis |
2017 | Visiting Professor, Technical University of Munich, Germany |
Gabriella Edfeldt |
2017 | Graduate student |
Hans Liu |
2010 | Visiting M.S. student from Univ Cambridge |
Holger Hennig |
2013–2014, 2016, 2017 | Affiliated Scientist |
Imtiaz Khan |
2010–2012 | Postdoc, Marie Curie Fellow Research Executive Agency of the European Union (FP7) and Cardiff University, UK with Rachel Errington |
InHan Kang |
2005–2006 | M. Eng. student in Polina Golland's lab at MIT |
Jane Hung |
2015–2018 | Graduate Student |
Jan de Boer |
2012–2013 | Visiting professor, University of Twente, The Netherlands |
Jason Steffener |
2006 | Consultant |
Jonathan Roth |
2017 | Visiting M.S. student |
Joo Han Chang |
2005 | Undergraduate student |
Juan Caicedo |
2016-2019 | Postdoctoral Associate |
Jun Liu |
2006 | Undergraduate student |
Kate Sokolnicki |
2008–2012 | Image assay development for high-content screens |
Keone Hon |
2008 | Undergraduate student |
Kyle Karhohs |
2016-2018 | Postdoctoral Associate |
Kyungnam Kim |
2007 | Computational Biologist |
Lachlan Arthur |
2013 | High school student |
Lassi Paavolainen |
2018 | Visiting Postdoctoral Researcher |
Laura Murphy |
2017 | Postdoctoral Researcher |
Lee Kamentsky |
2008-2016 | Senior Principal Software Engineer for the CellProfiler project |
Linfeng Li |
2016-2017 | Graduate student |
Mark Bray |
2008-2016 | Image Assay Developer |
Markus Weckmann |
2017 | Visiting Scientist |
Marie Duc |
2017 | Visiting Student |
Martha Vokes |
2007–2008 | Image Assay Developer |
Matthew Veneskey |
2012-2014 | Administration and information technology |
Matthew Smith |
2018 | High school student |
Matthieu Broisin |
2018 | Visiting Master’s student from Swiss Federal Institute of Technology in Lausanne, Switzerland |
Maxime Lafarge |
2018 | Student from Eindhoven University of Technology in The Netherlands |
Mayank Kabra |
2008 | Visiting Ph.D student from Yoav Freund's lab at UCSD |
Mike Lamprecht |
2005–2007 | Data Analyst |
Minh Doan |
2016-2019 | Postdoctoral Researcher |
Mohammad Rohban |
2015–2018 | Postdoctoral Associate |
Nick Pawlowski |
2016 | Visiting graduate student |
Nikka Moshkov |
2019 | Student from University of Szeged, Hungary |
Ola Friman |
2005–2006 | Consultant |
Paul Rees |
2013 | Visiting professor, Swansea University, United Kingdom |
Peggy Anthony |
2007–2012 | Administration and information technology |
Peter Goldsborough |
2017 | Undergraduate Student |
Peter Swire |
2006 | High school student |
Priyanka Raja |
2016 | Visiting graduate student |
Riley Vale |
2018, 2019 | Undergraduate student |
Rob ter Horst |
2011 | Visiting M.S. student from Lutgarde Buydens' lab at Radboud University of Nijmegen, Netherlands |
Robin Neschke |
2010 | Undergraduate student |
Rodrigo Ipince |
2007 | Undergraduate student |
Rupinder Singh |
2011 | Undergraduate student |
Samuel Markson |
2013 | CellProfiler build engineer |
Santiago Benoit |
2017, 2018 | High school student |
Shravas Rao |
2009 | Undergraduate student from MIT |
Steve Moore |
2016 | Visiting Scientist |
Tammy Riklin Raviv |
2010–2012 | Research Fellow, Biomedical Image Analysis |
Tejas Shah |
2009 | Visiting M.S. student |
Thomas Blasi |
2014 | Visiting PhD student |
Thouis (Ray) Jones |
2003–2010 | Image processing and data mining for high-throughput image-based screens. |
Tim Becker |
2019-Present | Postdoctoral Researcher |
Tom Morgan |
2008 | Undergraduate student |
Tony Wu |
2005 | Undergraduate student |
Vasanth Singan |
2010 | Visiting M.S. student from Jeremy Simpson's lab at University College Dublin |
Vasiliy Chernyshev |
2017 | Postdoctoral Associate |
Vebjørn Ljoså |
2007-2015 | Data mining for microscopy-based high-throughput screens and profiling experiments |
Vicki Lay |
2006 | Undergraduate student |
Virginie Uhlmann |
2011 | Visiting M.S. student from École Polytechnique Fédérale de Lausanne (EPFL) in Switzerland |
Wyman Li |
2005 | Undergraduate student |